The mzIdentML data standard for mass spectrometry-based proteomics results.

Szczegóły
Abstrakt

Tytuł:: The mzIdentML data standard for mass spectrometry-based proteomics results.
Autorzy:: Jones AR; Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZJ, UK. />Eisenacher M
Mayer G
Kohlbacher O
Siepen J
Hubbard SJ
Selley JN
Searle BC
Shofstahl J
Seymour SL
Julian R
Binz PA
Deutsch EW
Hermjakob H
Reisinger F
Griss J
Vizcaíno JA
Chambers M
Pizarro A
Creasy D
Źródło:: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2012 Jul; Vol. 11 (7), pp. M111.014381. Date of Electronic Publication: 2012 Feb 27.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Język:: English
Imprint Name(s):: Publication: 2021- : [New York, NY] : Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology
Original Publication: Bethesda, MD : American Society for Biochemistry and Molecular Biology, [2002-
MeSH Terms:: Software*
Mass Spectrometry/*standards
Proteins/*analysis
Proteomics/*standards
Databases, Protein ; Internet ; Mass Spectrometry/methods ; Proteomics/methods
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Grant Information:: BB/F004605/1 United Kingdom BB_ Biotechnology and Biological Sciences Research Council; BB/H024654/1 United Kingdom BB_ Biotechnology and Biological Sciences Research Council; R01 GM087221 United States GM NIGMS NIH HHS; N01HV28179 United States HL NHLBI NIH HHS; P50 GM076547 United States GM NIGMS NIH HHS; BB/I000631/1 United Kingdom BB_ Biotechnology and Biological Sciences Research Council; United Kingdom WT_ Wellcome Trust; BB/I00095X/1 United Kingdom BB_ Biotechnology and Biological Sciences Research Council; BB/G010781/1 United Kingdom BB_ Biotechnology and Biological Sciences Research Council; N01-HV-28179 United States HV NHLBI NIH HHS; WT085949MA United Kingdom WT_ Wellcome Trust
Substance Nomenclature:: 0 (Proteins)
Entry Date(s):: Date Created: 20120301 Date Completed: 20121030 Latest Revision: 20240403
Update Code:: 20240403
PubMed Central ID:: PMC3394945
DOI:: 10.1074/mcp.M111.014381
PMID:: 22375074
: Czasopismo naukowe

We report the release of mzIdentML, an exchange standard for peptide and protein identification data, designed by the Proteomics Standards Initiative. The format was developed by the Proteomics Standards Initiative in collaboration with instrument and software vendors, and the developers of the major open-source projects in proteomics. Software implementations have been developed to enable conversion from most popular proprietary and open-source formats, and mzIdentML will soon be supported by the major public repositories. These developments enable proteomics scientists to start working with the standard for exchanging and publishing data sets in support of publications and they provide a stable platform for bioinformatics groups and commercial software vendors to work with a single file format for identification data.

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