Advances in microscale separations towards nanoproteomics applications.

Szczegóły
Abstrakt

Tytuł:: Advances in microscale separations towards nanoproteomics applications.
Autorzy:: Yi L; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States.
Piehowski PD; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States.
Shi T; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States.
Smith RD; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States.
Qian WJ; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States. Electronic address: .
Źródło:: Journal of chromatography. A [J Chromatogr A] 2017 Nov 10; Vol. 1523, pp. 40-48. Date of Electronic Publication: 2017 Jul 21.
Typ publikacji:: Journal Article; Review
Język:: English
Imprint Name(s):: Original Publication: Amsterdam ; New York : Elsevier, 1993-
MeSH Terms:: Proteomics/*trends
Chromatography, Liquid ; Electrophoresis, Capillary ; Mass Spectrometry ; Proteome/analysis ; Proteomics/instrumentation
References:: Anal Chem. 2012 Jun 5;84(11):5133-9. (PMID: 22519751)
J Chromatogr A. 2014 Jan 10;1324:1-10. (PMID: 24360812)
J Proteome Res. 2015 Mar 6;14(3):1637-42. (PMID: 25619111)
Nature. 2016 Sep 14;537(7620):347-55. (PMID: 27629641)
Anal Chem. 2002 Aug 15;74(16):4235-49. (PMID: 12199598)
Anal Chem. 2010 Mar 15;82(6):2262-71. (PMID: 20092350)
Anal Chem. 2017 Apr 18;89(8):4573-4580. (PMID: 28322047)
Anal Chem. 2008 Dec 1;80(23):8930-6. (PMID: 19551971)
Anal Chem. 2016 Jul 5;88(13):6653-7. (PMID: 27314579)
J Proteome Res. 2005 Nov-Dec;4(6):2397-403. (PMID: 16335993)
J Sep Sci. 2013 Sep;36(17):2838-47. (PMID: 23813982)
Anal Chem. 2016 May 3;88(9):4864-71. (PMID: 27062885)
Nat Rev Genet. 2013 Jan;14(1):35-48. (PMID: 23207911)
J Proteome Res. 2010 Dec 3;9(12):6242-55. (PMID: 20873769)
Anal Chem. 2012 Dec 4;84(23):10395-403. (PMID: 23140208)
Nat Rev Genet. 2016 Mar;17(3):175-88. (PMID: 26806412)
Nature. 2016 May 25;534(7605):55-62. (PMID: 27251275)
Sci Rep. 2014 May 23;4:5046. (PMID: 24854085)
Electrophoresis. 2013 Sep;34(17):2538-45. (PMID: 23775213)
Sci Rep. 2015 Oct 21;5:15456. (PMID: 26487484)
Electrophoresis. 2008 Apr;29(8):1604-11. (PMID: 18383016)
J Proteome Res. 2008 Feb;7(2):687-97. (PMID: 18034456)
Cell Rep. 2014 Sep 11;8(5):1583-94. (PMID: 25159151)
J Proteome Res. 2008 Apr;7(4):1555-64. (PMID: 18307296)
Mol Cell Proteomics. 2017 Apr;16(4):694-705. (PMID: 28126900)
J Chromatogr A. 2015 Sep 18;1412:75-81. (PMID: 26300481)
Anal Chem. 2014 Apr 15;86(8):3817-24. (PMID: 24666247)
Anal Chem. 2014 Jul 1;86(13):6331-6. (PMID: 24852005)
Anal Chem. 2005 Dec 1;77(23):7763-73. (PMID: 16316187)
Anal Chem. 2005 Aug 1;77(15):5028-35. (PMID: 16053318)
Anal Chem. 2011 Sep 15;83(18):6996-7005. (PMID: 21851055)
Anal Chem. 2007 Jan 15;79(2):540-5. (PMID: 17222018)
Nat Methods. 2014 Mar;11(3):319-24. (PMID: 24487582)
J Am Soc Mass Spectrom. 2003 May;14(5):492-500. (PMID: 12745218)
Curr Opin Biotechnol. 2011 Feb;22(1):3-8. (PMID: 20888217)
Anal Chem. 2003 Oct 15;75(20):5306-16. (PMID: 14710807)
Anal Chem. 2011 Jun 15;83(12):4916-23. (PMID: 21528898)
Mol Cell Proteomics. 2011 Sep;10(9):M111.011015. (PMID: 21642640)
J Proteomics. 2012 Jun 6;75(10):2844-54. (PMID: 22296676)
J Chromatogr A. 2014 Sep 12;1359:303-8. (PMID: 25082526)
Cell. 2016 Jul 28;166(3):755-765. (PMID: 27372738)
Nat Biotechnol. 2011 Jun 26;29(7):653-8. (PMID: 21706016)
J Proteome Res. 2006 May;5(5):1091-7. (PMID: 16674098)
Mol Cell Proteomics. 2006 Oct;5(10):1727-44. (PMID: 16887931)
Anal Chem. 2007 Feb 1;79(3):938-46. (PMID: 17263319)
Proteomics. 2013 Sep;13(17):2546-51. (PMID: 23798545)
Mol Cell. 2011 Oct 21;44(2):325-40. (PMID: 21906983)
Nat Biotechnol. 2001 Mar;19(3):242-7. (PMID: 11231557)
Anal Chem. 2007 Jun 1;79(11):4241-6. (PMID: 17447730)
Mol Cell Proteomics. 2014 Sep;13(9):2426-34. (PMID: 24850871)
Anal Chem. 2008 Oct 1;80(19):7187-93. (PMID: 18826178)
Angew Chem Int Ed Engl. 2014 Dec 8;53(50):13931-3. (PMID: 25346227)
Mol Cell Proteomics. 2011 Nov;10(11):O111.011064. (PMID: 21788404)
Anal Chem. 2013 Mar 5;85(5):2569-73. (PMID: 23394296)
Anal Chem. 2011 Oct 1;83(19):7297-305. (PMID: 21848273)
Electrophoresis. 2009 May;30(10):1692-7. (PMID: 19360773)
Anal Chem. 2005 Sep 15;77(18):5793-9. (PMID: 16159108)
J Histochem Cytochem. 2015 Aug;63(8):626-36. (PMID: 26216138)
J Chromatogr A. 2002 Jun 25;960(1-2):85-96. (PMID: 12150566)
Rev Sci Instrum. 1972 Mar;43(3):404-9. (PMID: 5013444)
Anal Chem. 2007 Aug 15;79(16):6174-81. (PMID: 17625912)
J Proteome Res. 2011 Jul 1;10(7):3040-9. (PMID: 21526778)
J Proteome Res. 2006 Oct;5(10):2754-9. (PMID: 17022646)
Anal Chem. 2012 Oct 16;84(20):8505-13. (PMID: 23004022)
Expert Rev Proteomics. 2016;13(4):421-33. (PMID: 26960075)
Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15395-400. (PMID: 22949669)
Sci Rep. 2016 Dec 22;6:39223. (PMID: 28004771)
Mol Cell Proteomics. 2006 Mar;5(3):454-61. (PMID: 16291996)
Anal Chem. 1996 Jan 1;68(1):1-8. (PMID: 8779426)
Proteomics. 2016 May;16(10):1474-85. (PMID: 27030549)
Nat Rev Genet. 2013 Sep;14(9):618-30. (PMID: 23897237)
Anal Chem. 2004 Jan 1;76(1):144-54. (PMID: 14697044)
Anal Chem. 2014 Jul 15;86(14):6786-91. (PMID: 24958348)
Sci Rep. 2013 Dec 16;3:3511. (PMID: 24336509)
Sci Signal. 2016 Jul 12;9(436):rs6. (PMID: 27405981)
Nat Rev Mol Cell Biol. 2015 May;16(5):269-80. (PMID: 25857810)
Mol Cell Proteomics. 2011 Feb;10(2):M110.001479. (PMID: 20627868)
Proteomics. 2013 Feb;13(3-4):457-66. (PMID: 23255229)
J Mammary Gland Biol Neoplasia. 2012 Jun;17(2):155-64. (PMID: 22644111)
Nat Methods. 2013 Jul;10(7):634-7. (PMID: 23749302)
Anal Chem. 2012 Jul 17;84(14):6116-21. (PMID: 22690842)
Nat Commun. 2013;4:2171. (PMID: 23863870)
Anal Chem. 2015 Jul 7;87(13):6674-80. (PMID: 26061007)
Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):18902-7. (PMID: 19846766)
Nat Biotechnol. 2014 May;32(5):479-84. (PMID: 24752078)
J Proteome Res. 2013 Jun 7;12(6):2791-804. (PMID: 23679566)
Annu Rev Genet. 2011;45:431-45. (PMID: 21942365)
Annu Rev Anal Chem (Palo Alto Calif). 2016 Jun 12;9(1):499-519. (PMID: 27306313)
Nat Methods. 2009 Nov;6(11):785; author reply 785-6. (PMID: 19876013)
Nature. 2014 Sep 18;513(7518):382-7. (PMID: 25043054)
J Proteome Res. 2004 May-Jun;3(3):604-12. (PMID: 15253443)
Rapid Commun Mass Spectrom. 2010 Sep 15;24(17):2554-60. (PMID: 20740530)
Sci Rep. 2015 Nov 30;5:17319. (PMID: 26616523)
Analyst. 2013 Jun 7;138(11):3181-8. (PMID: 23591184)
Angew Chem Int Ed Engl. 2013 Dec 16;52(51):13661-4. (PMID: 24173663)
Endocrinology. 2016 Mar;157(3):1307-14. (PMID: 26745641)
Anal Chem. 1999 Aug 1;71(15):2957-64. (PMID: 10450147)
Anal Chim Acta. 2017 Jan 1;949:43-52. (PMID: 27876144)
Mol Cell. 2013 Feb 21;49(4):583-90. (PMID: 23438854)
Nat Protoc. 2006;1(2):586-603. (PMID: 17406286)
Chem Rev. 2013 Apr 10;113(4):2343-94. (PMID: 23438204)
PLoS One. 2014 Sep 15;9(9):e106881. (PMID: 25222838)
Mol Cell Proteomics. 2011 Nov;10(11):M110.007252. (PMID: 21859948)
Curr Opin Chem Biol. 2008 Oct;12(5):483-90. (PMID: 18718552)
Anal Chim Acta. 2012 Oct 31;750:207-11. (PMID: 23062442)
Mol Cell Proteomics. 2011 Feb;10(2):M110.000679. (PMID: 20530636)
Grant Information:: DP3 DK110844 United States DK NIDDK NIH HHS; P41 GM103493 United States GM NIGMS NIH HHS; UC4 DK104167 United States DK NIDDK NIH HHS
Contributed Indexing:: Keywords: Capillary electrophoresis; Mass spectrometry; Microscale separations; NanoLC; Nanoproteomics
Substance Nomenclature:: 0 (Proteome)
Entry Date(s):: Date Created: 20170803 Date Completed: 20171205 Latest Revision: 20240328
Update Code:: 20240329
PubMed Central ID:: PMC6042839
DOI:: 10.1016/j.chroma.2017.07.055
PMID:: 28765000
: Czasopismo naukowe

Microscale separation (e.g., liquid chromatography or capillary electrophoresis) coupled with mass spectrometry (MS) has become the primary tool for advanced proteomics, an indispensable technology for gaining understanding of complex biological processes. In recent decades significant advances have been achieved in MS-based proteomics. However, the current proteomics platforms still face an analytical challenge in overall sensitivity towards nanoproteomics applications for starting materials of less than 1μg total proteins (e.g., cellular heterogeneity in tissue pathologies). Herein, we review recent advances in microscale separation techniques and integrated sample processing strategies that improve the overall sensitivity and proteome coverage of the proteomics workflow, and their contributions towards nanoproteomics applications.
(Copyright © 2017 Elsevier B.V. All rights reserved.)

Informacja