Informacja

Drogi użytkowniku, aplikacja do prawidłowego działania wymaga obsługi JavaScript. Proszę włącz obsługę JavaScript w Twojej przeglądarce.

Tytuł pozycji:

Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish.

Tytuł:
Asymmetric expression patterns reveal a strong maternal effect and dosage compensation in polyploid hybrid fish.
Autorzy:
Li W; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Liu J; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Tan H; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Luo L; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Cui J; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Hu J; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Wang S; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Liu Q; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Hu F; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Tang C; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Ren L; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Yang C; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Zhao R; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Tao M; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Zhang C; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Qin Q; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China.; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China.
Liu S; State Key Laboratory of Developmental Biology of Freshwater Fish, Hunan Normal university, Changsha, 410081, Hunan, People's Republic of China. .; College of Life Sciences, Hunan Normal University, Changsha, 410081, Hunan, People's Republic of China. .
Źródło:
BMC genomics [BMC Genomics] 2018 Jul 03; Vol. 19 (1), pp. 517. Date of Electronic Publication: 2018 Jul 03.
Typ publikacji:
Journal Article
Język:
English
Imprint Name(s):
Original Publication: London : BioMed Central, [2000-
MeSH Terms:
Chimera/*genetics
Cyprinidae/*genetics
Dosage Compensation, Genetic/*genetics
Maternal Inheritance/*genetics
Animals ; Female ; Male ; Polyploidy ; RNA/chemistry ; RNA/isolation & purification ; RNA/metabolism ; Sequence Analysis, RNA ; Testis/metabolism ; Transcriptome
References:
Nat Rev Genet. 2005 Nov;6(11):836-46. (PMID: 16304599)
New Phytol. 2010 Apr;186(1):102-12. (PMID: 20149113)
Trends Ecol Evol. 2005 May;20(5):229-37. (PMID: 16701374)
New Phytol. 2010 Apr;186(1):184-93. (PMID: 20002320)
Bioinformatics. 2010 Jan 1;26(1):139-40. (PMID: 19910308)
New Phytol. 2004 Jan;161(1):107-112. (PMID: 19079643)
Sci Rep. 2016 Jun 06;6:27040. (PMID: 27265401)
Sci Rep. 2017 Jun 23;7(1):4189. (PMID: 28646171)
Science. 2007 Aug 17;317(5840):910-4. (PMID: 17702935)
BMC Biol. 2009 May 01;7:18. (PMID: 19409075)
Anim Reprod Sci. 2014 Dec 10;151(1-2):61-70. (PMID: 25287724)
Heredity (Edinb). 2013 Feb;110(2):171-80. (PMID: 23169565)
Nat Methods. 2008 Jul;5(7):621-8. (PMID: 18516045)
PLoS One. 2009;4(3):e4760. (PMID: 19274085)
Nat Rev Genet. 2002 Apr;3(4):252-61. (PMID: 11967550)
Curr Biol. 2006 Aug 22;16(16):1652-9. (PMID: 16920628)
Curr Biol. 2008 Sep 9;18(17):1344-8. (PMID: 18771921)
Bioinformatics. 2006 Jul 1;22(13):1658-9. (PMID: 16731699)
Proc Natl Acad Sci U S A. 2013 Feb 12;110(7):2665-9. (PMID: 23359717)
Mol Biol Evol. 2006 Feb;23(2):469-78. (PMID: 16280546)
Genetics. 2006 Jan;172(1):519-31. (PMID: 16204211)
Philos Trans R Soc Lond B Biol Sci. 2009 Apr 27;364(1520):1059-74. (PMID: 19324611)
New Phytol. 2012 Dec;196(4):966-71. (PMID: 23033870)
Genetics. 2010 Nov;186(3):801-12. (PMID: 20823338)
New Phytol. 2010 Apr;186(1):18-28. (PMID: 20002315)
Annu Rev Genet. 2008;42:443-61. (PMID: 18983261)
PLoS Genet. 2014 Mar 06;10(3):e1004180. (PMID: 24603805)
Nat Biotechnol. 2011 May 15;29(7):644-52. (PMID: 21572440)
BMC Genet. 2013 Nov 23;14:110. (PMID: 24267392)
J Hered. 2007 Mar-Apr;98(2):136-41. (PMID: 17208934)
Bioinformatics. 2005 Sep 15;21(18):3674-6. (PMID: 16081474)
Nat Genet. 2017 Apr;49(4):579-587. (PMID: 28263319)
Mol Biol Evol. 2009 Apr;26(4):925-36. (PMID: 19174479)
Heredity (Edinb). 2010 Feb;104(2):224-34. (PMID: 19707232)
Genome Biol Evol. 2014 Jan;6(1):247-59. (PMID: 24407856)
Nat Genet. 2016 Oct;48(10):1225-32. (PMID: 27595476)
Trends Plant Sci. 2007 Sep;12(9):427-32. (PMID: 17720610)
Mol Biol Evol. 2014 May;31(5):1066-76. (PMID: 24577842)
BMC Genomics. 2014 Dec 23;15:1170. (PMID: 25539568)
Heredity (Edinb). 2007 May;98(5):303-10. (PMID: 17301740)
Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4649-54. (PMID: 12665616)
Annu Rev Plant Biol. 2007;58:377-406. (PMID: 17280525)
Curr Biol. 2011 Apr 12;21(7):551-6. (PMID: 21419627)
Genetics. 2006 Jun;173(2):965-74. (PMID: 16547097)
Fish Physiol Biochem. 2018 Feb;44(1):13-20. (PMID: 28733712)
Plant J. 2005 Jan;41(2):221-30. (PMID: 15634199)
BMC Genomics. 2013 Oct 02;14:673. (PMID: 24088438)
Plant Mol Biol. 2007 Feb;63(3):381-91. (PMID: 17082872)
New Phytol. 2010 Apr;186(1):123-34. (PMID: 19925554)
Plant Biotechnol J. 2017 Apr;15(4):533-543. (PMID: 27735125)
Annu Rev Plant Biol. 2009;60:561-88. (PMID: 19575590)
Bioinformatics. 2010 Jan 1;26(1):136-8. (PMID: 19855105)
Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):1327-32. (PMID: 26768847)
Genetics. 1997 Nov;147(3):1381-7. (PMID: 9383078)
Trends Genet. 2003 Mar;19(3):141-7. (PMID: 12615008)
Plant Cell. 2006 Mar;18(3):676-87. (PMID: 16489123)
Plant Mol Biol. 2011 Oct;77(3):225-33. (PMID: 21805197)
Gen Comp Endocrinol. 1991 Jul;83(1):103-10. (PMID: 1879663)
Genetics. 2010 Sep;186(1):97-107. (PMID: 20551437)
Mol Biol Evol. 2016 Apr;33(4):984-94. (PMID: 26685177)
Sci Rep. 2017 Oct 20;7(1):13679. (PMID: 29057976)
Genetica. 2001;111(1-3):375-85. (PMID: 11841181)
Science. 1982 Apr 23;216(4544):373-80. (PMID: 17745860)
BMC Genomics. 2017 Jan 5;18(1):38. (PMID: 28056785)
J Integr Plant Biol. 2016 Feb;58(2):150-64. (PMID: 25828709)
Mol Cell Endocrinol. 2014 Mar 5;383(1-2):1-9. (PMID: 24316377)
Grant Information:
31730098 National Natural Science Foundation of China; 31430088 National Natural Science Foundation of China; CARS-45 the earmarked fund for China Agriculture Research System; 20134486 Cooperative Innovation Center of Engineering and New Products for Developmental Biology of Hunan Province; 2017NK1031 Hunan Provincial Natural Science and Technology Major Project
Contributed Indexing:
Keywords: Dosage compensation; Duplicated genes; Hybridization; Maternal effect; Transcriptome
Substance Nomenclature:
63231-63-0 (RNA)
Entry Date(s):
Date Created: 20180705 Date Completed: 20181218 Latest Revision: 20181218
Update Code:
20240105
PubMed Central ID:
PMC6030793
DOI:
10.1186/s12864-018-4883-7
PMID:
29969984
Czasopismo naukowe
Background: Hybridization and polyploidization are regarded as the major driving forces in plant speciation, diversification, and ecological adaptation. Our knowledge regarding the mechanisms of duplicated-gene regulation following genomic merging or doubling is primarily derived from plants and is sparse for vertebrates.
Results: We successfully obtained an F1 generation (including allodiploid hybrids and triploid hybrids) from female Megalobrama amblycephala Yih (BSB, 2n = 48) × male Xenocypri davidi Bleeker (YB, 2n = 48). The duplicated-gene expression patterns of the two types of hybrids were explored using RNA-Seq data. In total, 5.44 × 10 8 (69.32 GB) clean reads and 499,631 assembled unigenes were obtained from the testis transcriptomes. The sequence similarity analysis of 4265 orthologs revealed that the merged genomes were dominantly expressed in different ploidy hybrids. The differentially expressed genes in the two types of hybrids were asymmetric compared with those in both parents. Furthermore, the genome-wide expression level dominance (ELD) was biased toward the maternal BSB genome in both the allodiploid and triploid hybrids. In addition, the dosage-compensation mechanisms that reduced the triploid expression levels to the diploid state were determined in the triploid hybrids.
Conclusions: Our results indicate that divergent genomes undergo strong interactions and domination in allopolyploid offspring. Genomic merger has a greater effect on the gene-expression patterns than genomic doubling. The various expression mechanisms (including maternal effect and dosage compensation) in different ploidy hybrids suggest that the initial genomic merger and doubling play important roles in polyploidy adaptation and evolution.
Zaloguj się, aby uzyskać dostęp do pełnego tekstu.

Ta witryna wykorzystuje pliki cookies do przechowywania informacji na Twoim komputerze. Pliki cookies stosujemy w celu świadczenia usług na najwyższym poziomie, w tym w sposób dostosowany do indywidualnych potrzeb. Korzystanie z witryny bez zmiany ustawień dotyczących cookies oznacza, że będą one zamieszczane w Twoim komputerze. W każdym momencie możesz dokonać zmiany ustawień dotyczących cookies