Sponges Lack ParaHox Genes.

Szczegóły
Abstrakt

Tytuł:: Sponges Lack ParaHox Genes.
Autorzy:: Pastrana CC; Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine.; Department of Biology, University of Miami.
DeBiasse MB; Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine.; Department of Biology, University of Florida.
Ryan JF; Whitney Laboratory for Marine Bioscience, University of Florida, St. Augustine.; Department of Biology, University of Florida.
Źródło:: Genome biology and evolution [Genome Biol Evol] 2019 Apr 01; Vol. 11 (4), pp. 1250-1257.
Typ publikacji:: Letter; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Język:: English
Imprint Name(s):: Original Publication: Oxford, UK : Oxford University Press
MeSH Terms:: Homeodomain Proteins/*genetics
Porifera/*genetics
Animals ; Models, Genetic
References:: Bioinformatics. 2005 May 1;21(9):2104-5. (PMID: 15647292)
Curr Biol. 2012 Oct 23;22(20):1951-6. (PMID: 23022064)
Nature. 2010 Aug 5;466(7307):720-6. (PMID: 20686567)
Evol Dev. 2011 Nov-Dec;13(6):567-8. (PMID: 23016940)
Mol Biol Evol. 2018 Feb 1;35(2):486-503. (PMID: 29177474)
Nucleic Acids Res. 2001 Aug 1;29(15):3258-69. (PMID: 11470884)
Nat Ecol Evol. 2017 Apr 10;1(5):126. (PMID: 28812701)
Curr Biol. 2017 Apr 3;27(7):958-967. (PMID: 28318975)
Bioinformatics. 2001 Dec;17(12):1246-7. (PMID: 11751242)
Nat Ecol Evol. 2017 Nov;1(11):1737-1746. (PMID: 28993654)
Nature. 2008 Apr 10;452(7188):745-9. (PMID: 18322464)
Science. 2013 Dec 13;342(6164):1242592. (PMID: 24337300)
Curr Biol. 2007 Apr 17;17(8):706-10. (PMID: 17379523)
PLoS One. 2009;4(1):e4231. (PMID: 19156208)
Trends Ecol Evol. 1992 Mar;7(3):73-9. (PMID: 21235960)
Syst Biol. 2015 Nov;64(6):1048-58. (PMID: 26231182)
Syst Biol. 2000 Dec;49(4):652-70. (PMID: 12116432)
Bioinformatics. 2014 May 1;30(9):1312-3. (PMID: 24451623)
Biol Direct. 2007 Dec 13;2:37. (PMID: 18078518)
Curr Opin Genet Dev. 2009 Dec;19(6):591-9. (PMID: 19880309)
Dev Genes Evol. 2008 Dec;218(11-12):579-90. (PMID: 18797923)
Syst Biol. 2002 Jun;51(3):492-508. (PMID: 12079646)
Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):E4858-66. (PMID: 24277850)
Nature. 2014 Oct 30;514(7524):620-3. (PMID: 25355364)
BMC Biol. 2007 Oct 26;5:47. (PMID: 17963489)
Nature. 1993 Feb 11;361(6412):490-2. (PMID: 8094230)
Syst Biol. 2012 May;61(3):539-42. (PMID: 22357727)
Evodevo. 2010 Oct 04;1(1):9. (PMID: 20920347)
Syst Biol. 2019 Jul 1;68(4):672-678. (PMID: 30597106)
PLoS Biol. 2005 Jul;3(7):e245. (PMID: 16000021)
Genome Biol Evol. 2015 Dec 10;8(1):271-81. (PMID: 26659921)
Syst Biol. 2010 May;59(3):307-21. (PMID: 20525638)
Contributed Indexing:: Keywords: Cdx; Hox; ParaHox; Porifera; sponge
Substance Nomenclature:: 0 (Homeodomain Proteins)
Entry Date(s):: Date Created: 20190313 Date Completed: 20190711 Latest Revision: 20200309
Update Code:: 20240105
PubMed Central ID:: PMC6486804
DOI:: 10.1093/gbe/evz052
PMID:: 30859199
: Raport

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Addressing the origin of axial-patterning machinery is essential for understanding the evolution of animal form. Historically, sponges, a lineage that branched off early in animal evolution, were thought to lack Hox and ParaHox genes, suggesting that these critical axial-patterning genes arose after sponges diverged. However, a recent study has challenged this long-held doctrine by claiming to identify ParaHox genes (Cdx family) in two calcareous sponge species, Sycon ciliatum and Leucosolenia complicata. We reanalyzed the main data sets in this paper and analyzed an additional data set that expanded the number of bilaterians represented and removed outgroup homeodomains. As in the previous study, our Neighbor-Joining analyses of the original data sets recovered a clade that included sponge and Cdx genes, whereas Bayesian analyses placed these sponge genes within the NKL subclass of homeodomains. Unlike the original study, only one of our two maximum-likelihood analyses was congruent with Cdx genes in sponges. Our analyses of our additional data set led to the sponge genes consistently being placed within the NKL subclass of homeodomains regardless of method or model. Our results show more support for these sponge genes belonging to the NKL subclass, and therefore imply that Hox and ParaHox genes arose after Porifera diverged from the rest of animals.
(© The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)

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