Insect genomes: progress and challenges.

Tytuł:: Insect genomes: progress and challenges.
Autorzy:: Li F; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou, China.
Zhao X; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou, China.
Li M; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou, China.
He K; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou, China.
Huang C; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou, China.
Zhou Y; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou, China.
Li Z; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou, China.
Walters JR; Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, USA.
Źródło:: Insect molecular biology [Insect Mol Biol] 2019 Dec; Vol. 28 (6), pp. 739-758. Date of Electronic Publication: 2019 Jun 17.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't; Review
Język:: English
Imprint Name(s):: Publication: Oxford : Blackwell Scientific For The Royal Entomological Society
Original Publication: Oxford : Published for the Royal Entomological Society by Blackwell Scientific Publications, c1992-
MeSH Terms:: Databases as Topic*
Genome, Insect*
Insect Control*
Insecta/*genetics
Animals ; Chromosome Mapping ; Databases, Genetic ; Sequence Analysis, DNA
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Contributed Indexing:: Keywords: application; database; insect genome; pest control; sequencing
Entry Date(s):: Date Created: 20190524 Date Completed: 20200110 Latest Revision: 20200110
Update Code:: 20240104
DOI:: 10.1111/imb.12599
PMID:: 31120160
: Czasopismo naukowe

Pełny tekst

In the wake of constant improvements in sequencing technologies, numerous insect genomes have been sequenced. Currently, 1219 insect genome-sequencing projects have been registered with the National Center for Biotechnology Information, including 401 that have genome assemblies and 155 with an official gene set of annotated protein-coding genes. Comparative genomics analysis showed that the expansion or contraction of gene families was associated with well-studied physiological traits such as immune system, metabolic detoxification, parasitism and polyphagy in insects. Here, we summarize the progress of insect genome sequencing, with an emphasis on how this impacts research on pest control. We begin with a brief introduction to the basic concepts of genome assembly, annotation and metrics for evaluating the quality of draft assemblies. We then provide an overview of genome information for numerous insect species, highlighting examples from prominent model organisms, agricultural pests and disease vectors. We also introduce the major insect genome databases. The increasing availability of insect genomic resources is beneficial for developing alternative pest control methods. However, many opportunities remain for developing data-mining tools that make maximal use of the available insect genome resources. Although rapid progress has been achieved, many challenges remain in the field of insect genomics.
(© 2019 The Royal Entomological Society.)

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