Genetic lineage tracing with multiple DNA recombinases: A user's guide for conducting more precise cell fate mapping studies.

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Tytuł:: Genetic lineage tracing with multiple DNA recombinases: A user's guide for conducting more precise cell fate mapping studies.
Autorzy:: Liu K; State Key Laboratory of Cell Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, China.; School of Life Science and Technology, Shanghai Tech University, Shanghai 201210, China.
Jin H; State Key Laboratory of Cell Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, China.
Zhou B; State Key Laboratory of Cell Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, China .; School of Life Science and Technology, Shanghai Tech University, Shanghai 201210, China.
Źródło:: The Journal of biological chemistry [J Biol Chem] 2020 May 08; Vol. 295 (19), pp. 6413-6424. Date of Electronic Publication: 2020 Mar 25.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't; Review
Język:: English
Imprint Name(s):: Publication: 2021- : [New York, NY] : Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology
Original Publication: Baltimore, MD : American Society for Biochemistry and Molecular Biology
MeSH Terms:: Cell Tracking*
DNA Nucleotidyltransferases*/genetics
DNA Nucleotidyltransferases*/metabolism
Recombination, Genetic*
Stem Cells/*metabolism
Animals ; Humans
References:: Nat Genet. 2000 Jun;25(2):139-40. (PMID: 10835623)
Cell. 2010 Oct 1;143(1):134-44. (PMID: 20887898)
Nat Genet. 2011 Jan;43(1):34-41. (PMID: 21113154)
Nat Protoc. 2010 May;5(5):898-911. (PMID: 20431535)
PLoS One. 2009;4(1):e4286. (PMID: 19172189)
Cell Discov. 2020 Jan 7;6:1. (PMID: 31934347)
PLoS One. 2013 Oct 15;8(10):e77672. (PMID: 24143253)
Genesis. 2000 Feb;26(2):99-109. (PMID: 10686599)
Cell Stem Cell. 2009 Jun 5;4(6):525-34. (PMID: 19497281)
Nat Genet. 2003 Sep;35(1):70-5. (PMID: 12923530)
Hepatology. 2014 Jul;60(1):278-89. (PMID: 24700457)
Nat Genet. 2019 Apr;51(4):728-738. (PMID: 30778223)
J Biol Chem. 2020 Jan 17;295(3):690-700. (PMID: 31771978)
Nat Biotechnol. 2017 Jun;35(6):569-576. (PMID: 28459449)
Nature. 2007 Nov 1;450(7166):56-62. (PMID: 17972876)
Am J Pathol. 2002 Jul;161(1):173-82. (PMID: 12107102)
Genesis. 2009 Feb;47(2):107-14. (PMID: 19165827)
Dev Cell. 2003 Dec;5(6):877-89. (PMID: 14667410)
Nat Neurosci. 2010 Jan;13(1):133-40. (PMID: 20023653)
Nat Med. 2017 Dec;23(12):1488-1498. (PMID: 29131159)
Cell. 2012 Jan 20;148(1-2):33-45. (PMID: 22265400)
Cell. 2005 Jun 17;121(6):823-35. (PMID: 15960971)
Proc Natl Acad Sci U S A. 1998 Feb 3;95(3):1218-23. (PMID: 9448312)
Nat Cell Biol. 1999 Dec;1(8):E203-7. (PMID: 10587659)
Nat Med. 2015 Aug;21(8):866-8. (PMID: 26168292)
Nat Rev Cancer. 2013 Mar;13(3):161-71. (PMID: 23388619)
Dev Cell. 2011 Sep 13;21(3):394-409. (PMID: 21920310)
Circ Res. 2004 Sep 17;95(6):645-54. (PMID: 15297379)
Cell Stem Cell. 2013 Nov 7;13(5):520-33. (PMID: 24209759)
Cell. 2013 Aug 15;154(4):827-42. (PMID: 23953114)
J Clin Invest. 2011 Dec;121(12):4850-60. (PMID: 22105172)
Science. 2004 Jan 16;303(5656):359-63. (PMID: 14671312)
Science. 2009 Apr 3;324(5923):98-102. (PMID: 19342590)
Nat Commun. 2018 Feb 21;9(1):754. (PMID: 29467410)
Development. 2006 Sep;133(18):3607-18. (PMID: 16914500)
J Biol Chem. 2017 May 26;292(21):8594-8604. (PMID: 28377509)
Nat Genet. 2016 May;48(5):537-43. (PMID: 27019112)
Genes Dev. 2013 Apr 1;27(7):719-24. (PMID: 23520387)
Cell. 2014 Jan 30;156(3):440-55. (PMID: 24485453)
Cell Stem Cell. 2014 Sep 4;15(3):340-349. (PMID: 25130492)
Cell. 2015 Aug 13;162(4):766-79. (PMID: 26276631)
Cell. 1990 Jun 29;61(7):1329-37. (PMID: 2364430)
Dev Dyn. 2004 Jun;230(2):239-50. (PMID: 15162503)
Development. 2018 Sep 17;145(18):. (PMID: 30111655)
Nat Rev Mol Cell Biol. 2013 Aug;14(8):489-502. (PMID: 23860235)
Cell Rep. 2014 Aug 21;8(4):933-9. (PMID: 25131204)
Cell Res. 2016 Jan;26(1):119-30. (PMID: 26634606)
Circ Res. 2015 Jan 30;116(3):515-30. (PMID: 25634974)
Annu Rev Immunol. 2007;25:139-70. (PMID: 17129175)
Circ Res. 2006 Jun 23;98(12):1547-54. (PMID: 16709902)
Circ Res. 2012 Mar 30;110(7):922-6. (PMID: 22394517)
Science. 1978 Dec 22;202(4374):1295-8. (PMID: 725606)
Cell. 2011 Jul 22;146(2):209-21. (PMID: 21737130)
Cell. 2011 Jun 24;145(7):1142-55. (PMID: 21664664)
Curr Opin Cell Biol. 2019 Dec;61:101-109. (PMID: 31446248)
Dev Biol. 1982 Apr;90(2):352-62. (PMID: 7075865)
Nature. 2007 Oct 25;449(7165):1003-7. (PMID: 17934449)
Nat Genet. 1999 Jan;21(1):70-1. (PMID: 9916792)
BMC Dev Biol. 2001;1:4. (PMID: 11299042)
Nat Neurosci. 2008 Apr;11(4):417-9. (PMID: 18344997)
Development. 2000 Apr;127(8):1607-16. (PMID: 10725237)
J Biol Chem. 1995 Apr 21;270(16):9535-42. (PMID: 7721882)
Development. 2003 Nov;130(21):5241-55. (PMID: 12954714)
Biophys J. 1979 Jun;26(3):557-73. (PMID: 263688)
Nucleic Acids Res. 2011 Apr;39(8):e49. (PMID: 21288882)
Neuron. 2015 Mar 4;85(5):942-58. (PMID: 25741722)
Cell. 2005 May 6;121(3):479-92. (PMID: 15882628)
Dis Model Mech. 2009 Sep-Oct;2(9-10):508-15. (PMID: 19692579)
Dev Biol. 1981 Oct 30;87(2):201-11. (PMID: 7286425)
Nat Biotechnol. 2017 Jun;35(6):577-582. (PMID: 28459450)
EMBO J. 2019 Jun 17;38(12):. (PMID: 31028085)
Neuron. 1990 Feb;4(2):203-14. (PMID: 1689586)
Development. 2020 Feb 17;147(4):. (PMID: 31988189)
Cell. 1986 Jun 20;45(6):917-27. (PMID: 2871944)
Stem Cell Reports. 2019 Mar 5;12(3):624-638. (PMID: 30773487)
Cell Stem Cell. 2014 Nov 6;15(5):605-18. (PMID: 25312494)
Contributed Indexing:: Keywords: Cre-loxP; Dre-rox; cell fate mapping; development; dual recombination; gene expression; gene mapping; genetic recombination; genetics; lineage trace; organ regeneration; reporter gene; site-specific DNA recombinase; stem cell; tissue regeneration
Substance Nomenclature:: EC 2.7.7.- (DNA Nucleotidyltransferases)
EC 2.7.7.- (Site-specific recombinase)
Entry Date(s):: Date Created: 20200328 Date Completed: 20201223 Latest Revision: 20210205
Update Code:: 20240105
PubMed Central ID:: PMC7212637
DOI:: 10.1074/jbc.REV120.011631
PMID:: 32213599
: Czasopismo naukowe

Site-specific recombinases, such as Cre, are a widely used tool for genetic lineage tracing in the fields of developmental biology, neural science, stem cell biology, and regenerative medicine. However, nonspecific cell labeling by some genetic Cre tools remains a technical limitation of this recombination system, which has resulted in data misinterpretation and led to many controversies in the scientific community. In the past decade, to enhance the specificity and precision of genetic targeting, researchers have used two or more orthogonal recombinases simultaneously for labeling cell lineages. Here, we review the history of cell-tracing strategies and then elaborate on the working principle and application of a recently developed dual genetic lineage-tracing approach for cell fate studies. We place an emphasis on discussing the technical strengths and caveats of different methods, with the goal to develop more specific and efficient tracing technologies for cell fate mapping. Our review also provides several examples for how to use different types of DNA recombinase-mediated lineage-tracing strategies to improve the resolution of the cell fate mapping in order to probe and explore cell fate-related biological phenomena in the life sciences.
(© 2020 Liu et al.)

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