Planktonic foraminifera genomic variations reflect paleoceanographic changes in the Arctic: evidence from sedimentary ancient DNA.

Tytuł:: Planktonic foraminifera genomic variations reflect paleoceanographic changes in the Arctic: evidence from sedimentary ancient DNA.
Autorzy:: Pawłowska J; Institute of Oceanology Polish Academy of Sciences, Sopot, Poland. .
Wollenburg JE; Alfred Wegener Institute, Bremerhaven, Germany.
Zajączkowski M; Institute of Oceanology Polish Academy of Sciences, Sopot, Poland.
Pawlowski J; Institute of Oceanology Polish Academy of Sciences, Sopot, Poland.; University of Geneva, Geneva, Switzerland.
Źródło:: Scientific reports [Sci Rep] 2020 Sep 15; Vol. 10 (1), pp. 15102. Date of Electronic Publication: 2020 Sep 15.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
Język:: English
Imprint Name(s):: Original Publication: London : Nature Publishing Group, copyright 2011-
MeSH Terms:: Biodiversity*
Genetic Variation*
DNA, Ancient/*analysis
Foraminifera/*genetics
Foraminifera/*growth & development
Genomics/*methods
Geologic Sediments/*analysis
Arctic Regions ; Evolution, Molecular ; Foraminifera/classification ; Fossils ; Paleography ; Phylogeny
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Grant Information:: 31003A_179125 Switzerland SNSF_ Swiss National Science Foundation
Substance Nomenclature:: 0 (DNA, Ancient)
Entry Date(s):: Date Created: 20200916 Date Completed: 20201215 Latest Revision: 20210915
Update Code:: 20240104
PubMed Central ID:: PMC7492196
DOI:: 10.1038/s41598-020-72146-9
PMID:: 32934321
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Pełny tekst

Deciphering the evolution of marine plankton is typically based on the study of microfossil groups. Cryptic speciation is common in these groups, and large intragenomic variations occur in ribosomal RNA genes of many morphospecies. In this study, we correlated the distribution of ribosomal amplicon sequence variants (ASVs) with paleoceanographic changes by analyzing the high-throughput sequence data assigned to Neogloboquadrina pachyderma in a 140,000-year-old sediment core from the Arctic Ocean. The sedimentary ancient DNA demonstrated the occurrence of various N. pachyderma ASVs whose occurrence and dominance varied through time. Most remarkable was the striking appearance of ASV18, which was nearly absent in older sediments but became dominant during the last glacial maximum and continues to persist today. Although the molecular ecology of planktonic foraminifera is still poorly known, the analysis of their intragenomic variations through time has the potential to provide new insight into the evolution of marine biodiversity and may lead to the development of new and important paleoceanographic proxies.

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