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Tytuł:
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Transcriptomic profiles of non-embryogenic and embryogenic callus cells in a highly regenerative upland cotton line (Gossypium hirsutum L.).
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Autorzy:
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Wen L; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.; Department of Food and Biology Engineering, College of Food and Chemistry Engineering, Changsha University of Science and Technology, Changsha, Hunan, 410114, People's Republic of China.
Li W; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.
Parris S; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.
West M; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.
Lawson J; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.
Smathers M; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.
Li Z; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA.
Jones D; Cotton Incorporated, Carry, NC, USA.
Jin S; National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China.
Saski CA; Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, USA. .
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Źródło:
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BMC developmental biology [BMC Dev Biol] 2020 Dec 02; Vol. 20 (1), pp. 25. Date of Electronic Publication: 2020 Dec 02.
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Typ publikacji:
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Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
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Język:
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English
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Imprint Name(s):
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Original Publication: London : BioMed Central, [2001-2021]
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MeSH Terms:
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Plant Somatic Embryogenesis Techniques*
Transcriptome*
Gossypium/*genetics
DNA Methylation/genetics ; Gene Expression Regulation, Plant ; Gossypium/physiology ; Plant Cells/metabolism ; Plant Growth Regulators/genetics ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Signal Transduction/genetics ; Transcription Factors/genetics
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Grant Information:
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1739092 International National Science Foundation
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Contributed Indexing:
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Keywords: Callus, embryo; Gossypium hirsutum L; Somatic embryogenesis
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Substance Nomenclature:
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0 (Plant Growth Regulators)
0 (Plant Proteins)
0 (Transcription Factors)
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Entry Date(s):
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Date Created: 20201203 Date Completed: 20210927 Latest Revision: 20210927
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Update Code:
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20240104
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PubMed Central ID:
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PMC7713314
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DOI:
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10.1186/s12861-020-00230-4
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PMID:
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33267776
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Background: Genotype independent transformation and whole plant regeneration through somatic embryogenesis relies heavily on the intrinsic ability of a genotype to regenerate. The critical genetic architecture of non-embryogenic callus (NEC) cells and embryogenic callus (EC) cells in a highly regenerable cotton genotype is unknown.
Results: In this study, gene expression profiles of a highly regenerable Gossypium hirsutum L. cultivar, Jin668, were analyzed at two critical developmental stages during somatic embryogenesis, non-embryogenic callus (NEC) cells and embryogenic callus (EC) cells. The rate of EC formation in Jin668 is 96%. Differential gene expression analysis revealed a total of 5333 differentially expressed genes (DEG) with 2534 genes upregulated and 2799 genes downregulated in EC. A total of 144 genes were unique to NEC cells and 174 genes were unique to EC. Clustering and enrichment analysis identified genes upregulated in EC that function as transcription factors/DNA binding, phytohormone response, oxidative reduction, and regulators of transcription; while genes categorized in methylation pathways were downregulated. Four key transcription factors were identified based on their sharp upregulation in EC tissue; LEAFY COTYLEDON 1 (LEC1), BABY BOOM (BBM), FUSCA (FUS3) and AGAMOUS-LIKE15 with distinguishable subgenome expression bias.
Conclusions: This comparative analysis of NEC and EC transcriptomes gives new insights into the genes involved in somatic embryogenesis in cotton.
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