Thermoplasmata and Nitrososphaeria as dominant archaeal members in acid mine drainage sediment of Malanjkhand Copper Project, India.

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Tytuł:: Thermoplasmata and Nitrososphaeria as dominant archaeal members in acid mine drainage sediment of Malanjkhand Copper Project, India.
Autorzy:: Gupta A; Environmental Microbiology and Genomics Laboratory, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India.
Saha A; Environmental Microbiology and Genomics Laboratory, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India.
Sar P; Environmental Microbiology and Genomics Laboratory, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, 721302, India. .
Źródło:: Archives of microbiology [Arch Microbiol] 2021 May; Vol. 203 (4), pp. 1833-1841. Date of Electronic Publication: 2021 Jan 02.
Typ publikacji:: Journal Article
Język:: English
Imprint Name(s):: Original Publication: Berlin, New York, Springer-Verlag.
MeSH Terms:: Ammonia/*metabolism
Euryarchaeota/*metabolism
Geologic Sediments/*microbiology
Wastewater/*chemistry
Wastewater/*microbiology
Archaea/classification ; Copper/analysis ; DNA, Archaeal/genetics ; Ecosystem ; Euryarchaeota/classification ; Euryarchaeota/genetics ; India ; Metals, Heavy/analysis ; Mining ; Oxidation-Reduction ; Phylogeny ; RNA, Ribosomal, 16S/genetics
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Grant Information:: BT/PR7533/BCE/8/959/2013 Department of Biotechnology, Government of India; IIT/SRIC/BT/ODM/2015-16/141 Indian Institute of Technology Kharagpur
Contributed Indexing:: Keywords: Acid mine drainage; Ammonia oxidation; Archaeal diversity; Chemoheterotrophy
Substance Nomenclature:: 0 (DNA, Archaeal)
0 (Metals, Heavy)
0 (RNA, Ribosomal, 16S)
0 (Waste Water)
7664-41-7 (Ammonia)
789U1901C5 (Copper)
Entry Date(s):: Date Created: 20210103 Date Completed: 20210519 Latest Revision: 20221207
Update Code:: 20240105
DOI:: 10.1007/s00203-020-02130-4
PMID:: 33388792
: Czasopismo naukowe

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Acid mine drainage (AMD) harbors all three life forms in spite of its toxic and hazardous nature. In comparison to bacterial diversity, an in-depth understanding of the archaeal diversity in AMD and their ecological significance remain less explored. Archaeal populations are known to play significant roles in various biogeochemical cycles within the AMD ecosystem, and it is imperative to have a deeper understanding of archaeal diversity and their functional potential in AMD system. The present study is aimed to understand the archaeal diversity of an AMD sediment of Malanjkhand Copper Project, India through archaea specific V6 region of 16S rRNA gene amplicon sequencing. Geochemical data confirmed the acidic, toxic, heavy metal-rich nature of the sample. Archaea specific V6-16S rRNA gene amplicon data showed a predominance of Thermoplasmata (BSLdp215, uncultured Thermoplasmata, and Thermoplasmataceae) and Nitrososphaeria (Nitrosotaleaceae) members constituting ~ 95% of the archaeal community. Uncultured members of Bathyarchaeia, Group 1.1c, Hydrothermarchaeota, and Methanomassiliicoccales along with Methanobacteriaceae, Methanocellaceae, Haloferaceae, Methanosaetaceae, and Methanoregulaceae constituted the part of rare taxa. Analysis of sequence reads indicated that apart from their close ecological relevance, members of the Thermoplasmata present in Malanjkhand AMD were mostly involved in chemoheterotrophy, Fe/S redox cycling, and with heavy metal resistance, while the Nitrososphaeria members were responsible for ammonia oxidation and fixation of HCO 3 - through 3-hydroxypropionate/4-hydroxybutyrate cycle at low pH and oligotrophic environment which subsequently played an important role in nitrification process in AMD sediment. Overall, the present study elucidated the biogeochemical significance of archaeal populations inhabiting the toxic AMD environment.

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