Characterization of the novel HLA-DQA1*05:18 allele by next-generation sequencing.

Tytuł:: Characterization of the novel HLA-DQA1*05:18 allele by next-generation sequencing.
Autorzy:: Genebrier S; EFS Bretagne, Laboratoire D'immunogénétique et Histocompatibilité Immunologie Plaquettaire, Rennes, France.; CHU de Rennes, Pôle Biologie, Rennes, France.
Rouzaire P; CHU de Clermont-Ferrand, Service d'Histocompatibilité et d'Immunogénétique, Clermont-Ferrand, France.; Université Clermont Auvergne, Clermont-Ferrand, France.
Texeraud E; EFS Bretagne, Laboratoire D'immunogénétique et Histocompatibilité Immunologie Plaquettaire, Rennes, France.
Bertrand G; EFS Bretagne, Laboratoire D'immunogénétique et Histocompatibilité Immunologie Plaquettaire, Rennes, France.
Renac V; EFS Bretagne, Laboratoire D'immunogénétique et Histocompatibilité Immunologie Plaquettaire, Rennes, France.
Źródło:: HLA [HLA] 2021 Nov; Vol. 98 (5), pp. 494-496. Date of Electronic Publication: 2021 Mar 07.
Typ publikacji:: Journal Article
Język:: English
Imprint Name(s):: Original Publication: Oxford : Wiley Blackwell, [2016]-
MeSH Terms:: High-Throughput Nucleotide Sequencing*
Alleles ; HLA-DQ alpha-Chains/genetics ; Humans ; Sequence Analysis, DNA
References:: Robinson J, Barker DJ, Georgiou X, Cooper MA, Flicek P, Marsh SGE. IPD-IMGT/HLA database. Nucleic Acids Res. 2020;48:D948-D955.
Ehrenmann F, Kaas Q, Lefranc MP. IMGT/3Dstructure-DB and IMGT/DomainGapAlign: a database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF. Nucleic Acids Res. 2010;38:D301-D307.
Menezes Teles E, Oliveira D, Melo Santos de Serpa Brandão R, Claudio Demes da Mata Sousa L, et al. pHLA3D: an online database of predicted three-dimensional structures of HLA molecules. Hum Immunol. 2019;80(10):834-841.
Ponomarenko J, Bui HH, Li W, et al. ElliPro: a new structure-based tool for the prediction of antibody epitopes. BMC Bioinform. 2008;9:514.
Reynisson B, Alvarez B, Paul S, Peters B, Nielsen M. NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data. Nucleic Acids Res. 2020;48(W1):W449-W454.
Marsh SGE, Albert ED, Bodmer WF, et al. Nomenclature for factors of the HLA system, 2010. Tissue Antigens. 2010;75(4):291-455.
Contributed Indexing:: Keywords: HLA-DQA1*05:18; human leukocyte antigen; new allele; next-generation sequencing
Substance Nomenclature:: 0 (HLA-DQ alpha-Chains)
0 (HLA-DQA1 antigen)
Entry Date(s):: Date Created: 20210204 Date Completed: 20211102 Latest Revision: 20211102
Update Code:: 20240105
DOI:: 10.1111/tan.14202
PMID:: 33538399
: Czasopismo naukowe

Pełny tekst

DQA1*05:18 differs from DQA1*05:01:01:03 by one nucleotide substitution at position 94 in exon 2.
(© 2021 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.)

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