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Tytuł pozycji:

Discovery of mosaic genomic islands in Pseudomonas spp.

Tytuł :
Discovery of mosaic genomic islands in Pseudomonas spp.
Autorzy :
Jani M; Department of Biological Sciences and BioDiscovery Institute, University of North Texas, Denton, TX, USA.
Azad RK; Department of Biological Sciences and BioDiscovery Institute, University of North Texas, Denton, TX, USA. .; Department of Mathematics, University of North Texas, Denton, TX, USA. .
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Źródło :
Archives of microbiology [Arch Microbiol] 2021 Jul; Vol. 203 (5), pp. 2735-2742. Date of Electronic Publication: 2021 Mar 01.
Typ publikacji :
Journal Article
Język :
English
Imprint Name(s) :
Original Publication: Berlin, New York, Springer-Verlag.
MeSH Terms :
Genome, Bacterial/*genetics
Genomic Islands/*genetics
Pseudomonas/*genetics
Computational Biology ; Gene Transfer, Horizontal ; Genomics ; Software
References :
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Contributed Indexing :
Keywords: Clustering; Comparative genomics; Genome segmentation; Genomic islands; Pseudomonas spp.
Entry Date(s) :
Date Created: 20210301 Date Completed: 20210706 Latest Revision: 20210706
Update Code :
20210707
DOI :
10.1007/s00203-021-02253-2
PMID :
33646340
Czasopismo naukowe
Genomic islands, defined as large clusters of genes mobilized through horizontal gene transfer, have a profound impact on evolution of prokaryotes. Recently, we developed a new program, IslandCafe, for identifying such large localized structures in bacterial genomes. A unique attribute of IslandCafe is its ability to decipher mosaic structures within genomic islands. Mosaic genomic islands have generated immense interest due to novel traits that have been attributed to such islands. To provide the Pseudomonas research community a catalogue of mosaic islands in Pseudomonas spp., we applied IslandCafe to decipher genomic islands in 224 completely sequenced genomes of Pseudomonas spp. We also performed comparative genomic analysis using BLAST to infer potential sources of distinct segments within genomic islands. Of the total 4271 genomic islands identified in Pseudomonas spp., 1036 were found to be mosaic. We also identified drug-resistant and pathogenic genomic islands and their potential donors. Our analysis provides a useful resource for Pseudomonas research community to further examine and interrogate mosaic islands in the genomes of interest and understand their role in the emergence and evolution of novel traits.

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