Genome-Wide Characterization, Evolution, and Expression Profile Analysis of GATA Transcription Factors in Brachypodium distachyon .

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Abstrakt

Tytuł:: Genome-Wide Characterization, Evolution, and Expression Profile Analysis of GATA Transcription Factors in Brachypodium distachyon .
Autorzy:: Peng W; Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, China.; College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
Li W; Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, China.; College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
Song N; Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, China.; College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
Tang Z; Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, China.; College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
Liu J; Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, China.; College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
Wang Y; Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, China.; College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
Pan S; Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, China.; College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
Dai L; Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, China.; College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
Wang B; Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, China.; College of Plant Protection, Hunan Agricultural University, Changsha 410128, China.
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2021 Feb 18; Vol. 22 (4). Date of Electronic Publication: 2021 Feb 18.
Typ publikacji:: Journal Article
Język:: English
Imprint Name(s):: Original Publication: Basel, Switzerland : MDPI, [2000-
MeSH Terms:: Evolution, Molecular*
Gene Expression Profiling*
Gene Expression Regulation, Plant*/drug effects
Genome, Plant*
Brachypodium/*genetics
GATA Transcription Factors/*genetics
Amino Acid Motifs ; Ascomycota/drug effects ; Ascomycota/physiology ; Brachypodium/drug effects ; Chromosomes, Plant/genetics ; Conserved Sequence/genetics ; GATA Transcription Factors/chemistry ; GATA Transcription Factors/metabolism ; Gene Duplication ; Gene Regulatory Networks/drug effects ; Genes, Plant ; MicroRNAs/genetics ; MicroRNAs/metabolism ; Phylogeny ; Plant Growth Regulators/pharmacology ; Synteny/genetics
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Grant Information:: 31801721; 31672017 National Natural Science Foundation of China; 2016YFD0200800; 2016YFD0300707 National Key Research and Development Project; 2020JJ5240 the Natural Science Foundation of Hunan Province, China; 19B247 the Scientific Research Fund of Hunan Provincial Education Department; 19QN31 the Youth Fund Project of Hunan Agricultural University
Contributed Indexing:: Keywords: Brachypodium distachyon; GATA transcription factors; genome-wide characterization; phylogenetic analysis; profile analysis
Substance Nomenclature:: 0 (GATA Transcription Factors)
0 (MicroRNAs)
0 (Plant Growth Regulators)
SCR Organism:: Pyricularia oryzae
Entry Date(s):: Date Created: 20210306 Date Completed: 20210415 Latest Revision: 20210415
Update Code:: 20240104
PubMed Central ID:: PMC7922913
DOI:: 10.3390/ijms22042026
PMID:: 33670757
: Czasopismo naukowe

Pełny tekst

The GATA proteins, functioning as transcription factors (TFs), are involved in multiple plant physiological and biochemical processes. In this study, 28 GATA TFs of Brachypodium distachyon (BdGATA) were systematically characterized via whole-genome analysis. BdGATA genes unevenly distribute on five chromosomes of B. distachyon and undergo purifying selection during the evolution process. The putative cis -acting regulatory elements and gene interaction network of BdGATA were found to be associated with hormones and defense responses. Noticeably, the expression profiles measured by quantitative real-time PCR indicated that BdGATA genes were sensitive to methyl jasmonate (MeJA) and salicylic acid (SA) treatment, and 10 of them responded to invasion of the fungal pathogen Magnaporthe oryzae , which causes rice blast disease. Genome-wide characterization, evolution, and expression profile analysis of BdGATA genes can open new avenues for uncovering the functions of the GATA genes family in plants and further improve the knowledge of cellular signaling in plant defense.

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