Evolutionary and Characteristic Analysis of RING-DUF1117 E3 Ubiquitin Ligase Genes in Gossypium Discerning the Role of GhRDUF4D in Verticillium dahliae Resistance.

Tytuł:: Evolutionary and Characteristic Analysis of RING-DUF1117 E3 Ubiquitin Ligase Genes in Gossypium Discerning the Role of GhRDUF4D in Verticillium dahliae Resistance.
Autorzy:: Zhao YP; Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China.; State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China.
Shen JL; Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China.; State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China.
Li WJ; Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China.; State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China.
Wu N; Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China.; State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China.
Chen C; Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China.; State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China.
Hou YX; Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China.; College of Science, China Agricultural University, Beijing 100193, China.
Źródło:: Biomolecules [Biomolecules] 2021 Aug 03; Vol. 11 (8). Date of Electronic Publication: 2021 Aug 03.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
Język:: English
Imprint Name(s):: Original Publication: Basel, Switzerland : MDPI, 2011-
MeSH Terms:: Arabidopsis Proteins/*genetics
Disease Resistance/*genetics
Gossypium/*genetics
Plant Diseases/*genetics
Plant Immunity/*genetics
Ubiquitin-Protein Ligases/*genetics
Adaptation, Physiological/genetics ; Adaptation, Physiological/immunology ; Arabidopsis/classification ; Arabidopsis/genetics ; Arabidopsis/immunology ; Arabidopsis/microbiology ; Arabidopsis Proteins/metabolism ; Ascomycota/growth & development ; Ascomycota/pathogenicity ; Base Sequence ; CYS2-HIS2 Zinc Fingers/genetics ; CYS2-HIS2 Zinc Fingers/immunology ; Conserved Sequence ; Gene Expression Regulation, Plant ; Gossypium/classification ; Gossypium/immunology ; Gossypium/microbiology ; Host-Pathogen Interactions/genetics ; Host-Pathogen Interactions/immunology ; MicroRNAs/genetics ; MicroRNAs/immunology ; Multigene Family ; Phylogeny ; Plant Diseases/immunology ; Plant Diseases/microbiology ; Plants, Genetically Modified ; Promoter Regions, Genetic ; Protein Isoforms/genetics ; Protein Isoforms/metabolism ; Stress, Physiological ; Transcription Factors/genetics ; Transcription Factors/immunology ; Ubiquitin-Protein Ligases/metabolism
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Contributed Indexing:: Keywords: DUF1117; E3 ubiquitin ligase; GhRDUF4D; Verticillium dahliae; upland cotton
Substance Nomenclature:: 0 (Arabidopsis Proteins)
0 (MicroRNAs)
0 (Protein Isoforms)
0 (Transcription Factors)
EC 2.3.2.27 (RDUF1 protein, Arabidopsis)
EC 2.3.2.27 (Ubiquitin-Protein Ligases)
SCR Organism:: Verticillium dahliae
Entry Date(s):: Date Created: 20210827 Date Completed: 20210927 Latest Revision: 20210927
Update Code:: 20240104
PubMed Central ID:: PMC8392396
DOI:: 10.3390/biom11081145
PMID:: 34439811
: Czasopismo naukowe

Pełny tekst

Verticillium wilt, primarily induced by the soil-borne fungus Verticillium dahliae , is a serious threat to cotton fiber production. There are a large number of really interesting new gene (RING) domain-containing E3 ubiquitin ligases in Arabidopsis, of which three (At2g39720 (AtRHC2A), At3g46620 (AtRDUF1), and At5g59550 (AtRDUF2)) have a domain of unknown function (DUF) 1117 domain in their C-terminal regions. This study aimed to detect and characterize the RDUF members in cotton, to gain an insight into their roles in cotton's adaptation to environmental stressors. In this study, a total of 6, 7, 14, and 14 RDUF ( RING-DUF1117 ) genes were detected in Gossypium arboretum , G. raimondii , G. hirsutum , and G. barbadense , respectively. These RDUF genes were classified into three groups. The genes in each group were highly conserved based on gene structure and domain analysis. Gene duplication analysis revealed that segmental duplication occurred during cotton evolution. Expression analysis revealed that the GhRDUF genes were widely expressed during cotton growth and under abiotic stresses. Many cis -elements related to hormone response and environment stressors were identified in GhRDUF promoters. The predicted target miRNAs and transcription factors implied that GhRDUF s might be regulated by gra-miR482c, as well as by transcription factors, including MYB, C2H2, and Dof. The GhRDUF genes responded to cold, drought, and salt stress and were sensitive to jasmonic acid, salicylic acid, and ethylene signals. Meanwhile, GhRDUF4D expression levels were enhanced after V. dahliae infection. Subsequently, GhRDUF4D was verified by overexpression in Arabidopsis and virus-induced gene silencing treatment in upland cotton. We observed that V . dahliae resistance was significantly enhanced in transgenic Arabidopsis , and weakened in GhRDUF4D silenced plants. This study conducted a comprehensive analysis of the RDUF genes in Gossypium , hereby providing basic information for further functional studies.

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