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Tytuł pozycji:

Machine Learning-Based Radiomics Signatures for EGFR and KRAS Mutations Prediction in Non-Small-Cell Lung Cancer.

Tytuł:
Machine Learning-Based Radiomics Signatures for EGFR and KRAS Mutations Prediction in Non-Small-Cell Lung Cancer.
Autorzy:
Le NQK; Professional Master Program in Artificial Intelligence in Medicine, College of Medicine, Taipei Medical University, Taipei 106, Taiwan.; Research Center for Artificial Intelligence in Medicine, Taipei Medical University, Taipei 106, Taiwan.; Translational Imaging Research Center, Taipei Medical University Hospital, Taipei 110, Taiwan.
Kha QH; International Master/Ph.D. Program in Medicine, College of Medicine, Taipei Medical University, Taipei 110, Taiwan.
Nguyen VH; International Master/Ph.D. Program in Medicine, College of Medicine, Taipei Medical University, Taipei 110, Taiwan.; Oncology Center, Bai Chay Hospital, Quang Ninh 20000, Vietnam.
Chen YC; Department of Medical Imaging, Taipei Medical University Hospital, Taipei 11031, Taiwan.
Cheng SJ; Department of Medical Imaging, Taipei Medical University Hospital, Taipei 11031, Taiwan.
Chen CY; Professional Master Program in Artificial Intelligence in Medicine, College of Medicine, Taipei Medical University, Taipei 106, Taiwan.; Research Center for Artificial Intelligence in Medicine, Taipei Medical University, Taipei 106, Taiwan.; Department of Medical Imaging, Taipei Medical University Hospital, Taipei 11031, Taiwan.; Department of Radiology, School of Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan.
Źródło:
International journal of molecular sciences [Int J Mol Sci] 2021 Aug 26; Vol. 22 (17). Date of Electronic Publication: 2021 Aug 26.
Typ publikacji:
Journal Article
Język:
English
Imprint Name(s):
Original Publication: Basel, Switzerland : MDPI, [2000-
MeSH Terms:
Machine Learning*
Mutation*
Carcinoma, Non-Small-Cell Lung/*diagnostic imaging
Carcinoma, Non-Small-Cell Lung/*genetics
Lung Neoplasms/*diagnostic imaging
Lung Neoplasms/*genetics
Proto-Oncogene Proteins p21(ras)/*genetics
Aged ; Aged, 80 and over ; Algorithms ; Biomarkers ; Carcinoma, Non-Small-Cell Lung/pathology ; ErbB Receptors/genetics ; Female ; Humans ; Lung Neoplasms/pathology ; Male ; Middle Aged ; Neoplasm Staging ; ROC Curve ; Reproducibility of Results ; Supervised Machine Learning ; Tomography, X-Ray Computed
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Grant Information:
DP2-110-21121-01-A-06 Ministry of Education; MOST 109-2321-B-038-004 Ministry of Science and Technology, Taiwan
Contributed Indexing:
Keywords: EGFR mutation; KRAS mutation; eXtreme Gradient Boosting; feature selection; genetic algorithm; low-dose computed tomography; machine learning; non-small-cell lung carcinoma; radiogenomics
Substance Nomenclature:
0 (Biomarkers)
0 (KRAS protein, human)
EC 2.7.10.1 (EGFR protein, human)
EC 2.7.10.1 (ErbB Receptors)
EC 3.6.5.2 (Proto-Oncogene Proteins p21(ras))
Entry Date(s):
Date Created: 20210910 Date Completed: 20211020 Latest Revision: 20211020
Update Code:
20240105
PubMed Central ID:
PMC8431041
DOI:
10.3390/ijms22179254
PMID:
34502160
Czasopismo naukowe
Early identification of epidermal growth factor receptor (EGFR) and Kirsten rat sarcoma viral oncogene homolog (KRAS) mutations is crucial for selecting a therapeutic strategy for patients with non-small-cell lung cancer (NSCLC). We proposed a machine learning-based model for feature selection and prediction of EGFR and KRAS mutations in patients with NSCLC by including the least number of the most semantic radiomics features. We included a cohort of 161 patients from 211 patients with NSCLC from The Cancer Imaging Archive (TCIA) and analyzed 161 low-dose computed tomography (LDCT) images for detecting EGFR and KRAS mutations. A total of 851 radiomics features, which were classified into 9 categories, were obtained through manual segmentation and radiomics feature extraction from LDCT. We evaluated our models using a validation set consisting of 18 patients derived from the same TCIA dataset. The results showed that the genetic algorithm plus XGBoost classifier exhibited the most favorable performance, with an accuracy of 0.836 and 0.86 for detecting EGFR and KRAS mutations, respectively. We demonstrated that a noninvasive machine learning-based model including the least number of the most semantic radiomics signatures could robustly predict EGFR and KRAS mutations in patients with NSCLC.

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