Genome-Wide Identification and Characterization of the WRKY Gene Family in Scutellaria baicalensis Georgi under Diverse Abiotic Stress.

Tytuł:: Genome-Wide Identification and Characterization of the WRKY Gene Family in Scutellaria baicalensis Georgi under Diverse Abiotic Stress.
Autorzy:: Zhang C; Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710062, China.
Wang W; Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710062, China.
Wang D; Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710062, China.
Hu S; Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710062, China.
Zhang Q; Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710062, China.
Wang Z; Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710062, China.
Cui L; Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710062, China.
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2022 Apr 11; Vol. 23 (8). Date of Electronic Publication: 2022 Apr 11.
Typ publikacji:: Journal Article
Język:: English
Imprint Name(s):: Original Publication: Basel, Switzerland : MDPI, [2000-
MeSH Terms:: Gene Expression Regulation, Plant*
Scutellaria baicalensis*/genetics
Scutellaria baicalensis*/metabolism
Multigene Family ; Phylogeny ; Plant Proteins/metabolism ; Stress, Physiological/genetics ; Transcription Factors/metabolism
References:: Nucleic Acids Res. 2012 Apr;40(7):e49. (PMID: 22217600)
Chin Med. 2018 Jan 17;13:4. (PMID: 29375653)
Sci Rep. 2018 Mar 26;8(1):5197. (PMID: 29581461)
Mol Biol Rep. 2011 Aug;38(6):3883-96. (PMID: 21107718)
BMC Plant Biol. 2015 Feb 27;15:66. (PMID: 25849216)
BMC Plant Biol. 2020 Sep 25;20(1):443. (PMID: 32977756)
Bioinformatics. 2003 Aug 12;19(12):1585-6. (PMID: 12912844)
Front Plant Sci. 2021 Apr 09;12:640346. (PMID: 33897728)
Int J Mol Sci. 2019 May 15;20(10):. (PMID: 31096626)
Mol Biol Evol. 2012 Aug;29(8):2019-29. (PMID: 22337864)
Mol Genet Genomics. 2012 Jun;287(6):495-513. (PMID: 22570076)
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549. (PMID: 29722887)
Plant Physiol Biochem. 2020 May;150:90-98. (PMID: 32135477)
BMC Genomics. 2015 Mar 17;16:200. (PMID: 25881056)
Plants (Basel). 2020 Nov 08;9(11):. (PMID: 33171689)
Biochim Biophys Acta. 2012 Feb;1819(2):120-8. (PMID: 21964328)
J Exp Bot. 2011 Jan;62(2):775-85. (PMID: 20956359)
Front Plant Sci. 2018 Aug 07;9:997. (PMID: 30131813)
Genes (Basel). 2019 Feb 11;10(2):. (PMID: 30754717)
Chin Med. 2020 Sep 25;15:102. (PMID: 32994803)
Sci Rep. 2018 Jun 28;8(1):9804. (PMID: 29955098)
Plant Cell Rep. 2021 Nov;40(11):2135-2150. (PMID: 32888081)
Front Plant Sci. 2020 Jan 29;10:1746. (PMID: 32063911)
Nucleic Acids Res. 2015 Jan;43(Database issue):D996-1002. (PMID: 25355510)
Mol Plant. 2020 Aug 3;13(8):1194-1202. (PMID: 32585190)
Gene. 2021 May 30;783:145561. (PMID: 33705810)
PeerJ. 2021 Feb 23;9:e10982. (PMID: 33665039)
Nat Protoc. 2007;2(7):1565-72. (PMID: 17585298)
Plant Physiol. 2020 May;183(1):345-357. (PMID: 32179630)
Trends Plant Sci. 2000 May;5(5):199-206. (PMID: 10785665)
Plant Cell Rep. 2015 Aug;34(8):1295-306. (PMID: 25861729)
Sci Bull (Beijing). 2016;61(18):1391-1398. (PMID: 27730005)
Genes (Basel). 2019 Sep 30;10(10):. (PMID: 31575043)
BMC Genomics. 2016 May 10;17:343. (PMID: 27165545)
J Exp Bot. 2016 May;67(11):3383-96. (PMID: 27107291)
Plant Physiol Biochem. 2020 Oct;155:483-493. (PMID: 32827873)
Mol Genet Genomics. 2015 Oct;290(5):1701-15. (PMID: 25810323)
J Exp Bot. 2010 Sep;61(14):3901-14. (PMID: 20643804)
Front Plant Sci. 2017 Mar 23;8:380. (PMID: 28386267)
Nucleic Acids Res. 2021 Jan 8;49(D1):D412-D419. (PMID: 33125078)
Plant Signal Behav. 2019;14(8):1613131. (PMID: 31084451)
Viruses. 2018 Mar 09;10(3):. (PMID: 29522425)
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W597-603. (PMID: 22661580)
Trends Plant Sci. 2010 May;15(5):247-58. (PMID: 20304701)
Plant Cell Rep. 2012 Jul;31(7):1199-217. (PMID: 22371255)
J Exp Bot. 2015 Jun;66(11):3163-74. (PMID: 25873659)
Comput Biol Chem. 2019 Dec;83:107131. (PMID: 31586723)
Nucleic Acids Res. 2002 Jan 1;30(1):325-7. (PMID: 11752327)
Hepatology. 2018 Nov;68(5):1726-1740. (PMID: 29729190)
Front Plant Sci. 2016 Jun 03;7:760. (PMID: 27375634)
Nucleic Acids Res. 2016 Jul 8;44(W1):W236-41. (PMID: 27131786)
PLoS One. 2016 Feb 05;11(2):e0148243. (PMID: 26849139)
Environ Pollut. 2022 May 15;301:119035. (PMID: 35196562)
Acta Biochim Biophys Sin (Shanghai). 2016 Feb;48(2):117-31. (PMID: 26685304)
Plant Cell. 2017 Jun;29(6):1425-1439. (PMID: 28576847)
New Phytol. 2015 May;206(3):932-947. (PMID: 25623163)
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. (PMID: 19458158)
J Integr Plant Biol. 2017 Feb;59(2):86-101. (PMID: 27995748)
Grant Information:: 2017YFC1701300 the National Key Technologies R & D Program for Modernization of Traditional Chinese Med-icine; GK202001006 the Central University Innovation Team Project; 3217020611 National Natural Science Foundation of China
Contributed Indexing:: Keywords: Scutellaria baicalensis Georgi; WRKY; abiotic stress; expression patterns; gene family
Substance Nomenclature:: 0 (Plant Proteins)
0 (Transcription Factors)
Entry Date(s):: Date Created: 20220423 Date Completed: 20220426 Latest Revision: 20220716
Update Code:: 20240105
PubMed Central ID:: PMC9029115
DOI:: 10.3390/ijms23084225
PMID:: 35457040
: Czasopismo naukowe

Pełny tekst

The WRKY gene family is an important inducible regulatory factor in plants, which has been extensively studied in many model plants. It has progressively become the focus of investigation for the secondary metabolites of medicinal plants. Currently, there is no systematic analysis of the WRKY gene family in Scutellaria baicalensis Georgi. For this study, a systematic and comprehensive bioinformatics analysis of the WRKY gene family was conducted based on the genomic data of S. baicalensis . A total of 77 WRKY members were identified and 75 were mapped onto nine chromosomes, respectively. Their encoded WRKY proteins could be classified into three subfamilies: Group I, Group II (II-a, II-b, II-c, II-d, II-e), and Group III, based on the characteristics of the amino acid sequences of the WRKY domain and genetic structure. Syntenic analysis revealed that there were 35 pairs of repetitive fragments. Furthermore, the transcriptome data of roots, stems, leaves, and flowers showed that the spatial expression profiles of WRKYs were different. qRT-PCR analysis revealed that 11 stress-related WRKYs exhibited specific expression patterns under diverse treatments. In addition, sub cellular localization analysis indicated that SbWRKY26 and SbWRKY41 were localized in nucleus. This study is the first to report the identification and characterization of the WRKY gene family in S. baicalensis , which is valuable for the further exploration of the biological function of SbWRKYs. It also provides valuable bioinformatics data for S. baicalensis and provides a reference for assessing the medicinal properties of the genus.

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