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Tytuł pozycji:

Population structure of 3907 worldwide pigs and the introgression of Chinese indigenous pigs by European pigs.

Tytuł:
Population structure of 3907 worldwide pigs and the introgression of Chinese indigenous pigs by European pigs.
Autorzy:
Tang H; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Ouyang J; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Liu S; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Xiong Y; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Wu Y; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Wang L; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Wang C; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Yan X; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Shen Y; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Chen H; College of Life Science, Jiangxi Science and Technology Normal University, Nanchang, China.
Źródło:
Animal genetics [Anim Genet] 2022 Oct; Vol. 53 (5), pp. 599-612. Date of Electronic Publication: 2022 Jun 23.
Typ publikacji:
Journal Article
Język:
English
Imprint Name(s):
Publication: Oxford, England : Wiley-Blackwell
Original Publication: Oxford, England : Published by Blackwell Scientific Publications for the International Society for Animal Blood Group Research, c1986-
MeSH Terms:
Polymorphism, Single Nucleotide*
Sus scrofa*/genetics
Animals ; China ; Genetic Variation ; Genetics, Population ; Haplotypes ; Swine/genetics
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Grant Information:
YC2019-X02 Postgraduate Innovation Special Fund Project of Jiangxi Science & Technology Normal University; GJJ180627 Science and Technology Research Project of the Jiangxi Provincial Department of Education; 20202BABL215021 Youth Science Foundation of Jiangxi Province (CN)
Contributed Indexing:
Keywords: global pig genetics; introgression patterns; population structure
Entry Date(s):
Date Created: 20220623 Date Completed: 20220908 Latest Revision: 20220908
Update Code:
20240105
DOI:
10.1111/age.13234
PMID:
35735069
Czasopismo naukowe
With the improvement in sequencing technology and the decrease in sequencing cost, increasing amounts of genomic data for pigs have been uploaded to public databases. However, no researchers have to date integrated all currently available data to uncover the global genetic status of pigs. Meanwhile, little is known about the introgression from European to Chinese pigs and its underlying influences. Therefore, we integrated the effective genotype data of 3907 pigs from 193 populations worldwide using population genetic analysis, gene flow analysis and a sharing-IBD study. These findings illustrate not only the population structure of 59 Chinese native breeds and others but also the amounts of gene flow and introgression that have occurred between Western and Chinese pigs. In addition, we demonstrate the presence of introgressed European haplotypes in Chinese indigenous breeds and identify relevant introgressed regions that contain genes associated with growth and feed efficiency. Moreover, we compare the introgression patterns of Western and Chinese pigs and further discuss possible explanations for why the level of introgression differs between Chinese pig breeds and Western modern breeds. Collectively, this study provides a fine global population structure analysis of pigs and presents evidence of European pigs being interbred with local breeds in China.
(© 2022 Stichting International Foundation for Animal Genetics.)
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