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Tytuł pozycji:

Conserved conformational dynamics determine enzyme activity.

Tytuł:
Conserved conformational dynamics determine enzyme activity.
Autorzy:
Torgeson KR; Department of Chemistry and Biochemistry, The University of Arizona, Tucson, AZ, USA.; Department of Cell Biology, University of Connecticut Health, Farmington, CT, USA.
Clarkson MW; Department of Chemistry and Biochemistry, The University of Arizona, Tucson, AZ, USA.
Granata D; Structural Biology and NMR Laboratory, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Lindorff-Larsen K; Structural Biology and NMR Laboratory, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Page R; Department of Cell Biology, University of Connecticut Health, Farmington, CT, USA.
Peti W; Department of Molecular Biology and Biophysics, University of Connecticut Health, Farmington, CT, USA.
Źródło:
Science advances [Sci Adv] 2022 Aug 05; Vol. 8 (31), pp. eabo5546. Date of Electronic Publication: 2022 Aug 03.
Typ publikacji:
Journal Article
Język:
English
Imprint Name(s):
Original Publication: Washington, DC : American Association for the Advancement of Science, [2015]-
MeSH Terms:
Protein Conformation*
Catalytic Domain
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Entry Date(s):
Date Created: 20220803 Date Completed: 20220805 Latest Revision: 20220819
Update Code:
20240105
PubMed Central ID:
PMC9348788
DOI:
10.1126/sciadv.abo5546
PMID:
35921420
Czasopismo naukowe
Homologous enzymes often exhibit different catalytic rates despite a fully conserved active site. The canonical view is that an enzyme sequence defines its structure and function and, more recently, that intrinsic protein dynamics at different time scales enable and/or promote catalytic activity. Here, we show that, using the protein tyrosine phosphatase PTP1B, residues surrounding the PTP1B active site promote dynamically coordinated chemistry necessary for PTP1B function. However, residues distant to the active site also undergo distinct intermediate time scale dynamics and these dynamics are correlated with its catalytic activity and thus allow for different catalytic rates in this enzyme family. We identify these previously undetected motions using coevolutionary coupling analysis and nuclear magnetic resonance spectroscopy. Our findings strongly indicate that conserved dynamics drives the enzymatic activity of the PTP family. Characterization of these conserved dynamics allows for the identification of novel regulatory elements (therapeutic binding pockets) that can be leveraged for the control of enzymes.

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