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Tytuł:
CRISPR-Cas immunity is repressed by the LysR-type transcriptional regulator PigU.
Autorzy:
Smith LM; Department of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.; Genetics Otago, University of Otago, PO Box 56, Dunedin 9054, New Zealand.; Maurice Wilkins Centre for Molecular Biodiscovery, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
Hampton HG; Department of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
Yevstigneyeva MS; Department of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
Mahler M; Department of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.; Genetics Otago, University of Otago, PO Box 56, Dunedin 9054, New Zealand.; Maurice Wilkins Centre for Molecular Biodiscovery, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
Paquet ZSM; Department of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.; Laboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands.
Fineran PC; Department of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.; Genetics Otago, University of Otago, PO Box 56, Dunedin 9054, New Zealand.; Bioprotection Aotearoa, University of Otago, PO Box 56, Dunedin 9054, New Zealand.; Maurice Wilkins Centre for Molecular Biodiscovery, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 07. Date of Electronic Publication: 2023 Dec 07.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Looking for a needle in a haystack: de novo phenotypic target identification reveals Hippo pathway-mediated miR-202 regulation of egg production.
Autorzy:
Janati-Idrissi S; INRAE, UR1037, LPGP, Rennes, France.
de Abreu MR; INRAE, UR1037, LPGP, Rennes, France.
Guyomar C; Sigenae, GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France.
de Mello F; INRAE, UR1037, LPGP, Rennes, France.
Nguyen T; INRAE, UR1037, LPGP, Rennes, France.
Mechkouri N; Institut de Génétique Humaine, UMR 9002 CNRS and University of Montpellier, Montpellier, France.
Gay S; INRAE, UR1037, LPGP, Rennes, France.
Montfort J; INRAE, UR1037, LPGP, Rennes, France.
Gonzalez AA; MGX-Montpellier GenomiX, University of Montpellier, CNRS, INSERM, Montpellier, France.
Abbasi M; INRAE, UR1037, LPGP, Rennes, France.
Bugeon J; INRAE, UR1037, LPGP, Rennes, France.
Thermes V; INRAE, UR1037, LPGP, Rennes, France.
Seitz H; Institut de Génétique Humaine, UMR 9002 CNRS and University of Montpellier, Montpellier, France.
Bobe J; INRAE, UR1037, LPGP, Rennes, France.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 07. Date of Electronic Publication: 2023 Dec 07.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Correction to 'Comparison of cell response to chromatin and DNA damage'.
Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 07. Date of Electronic Publication: 2023 Dec 07.
Typ publikacji:
Published Erratum
Tytuł:
Lysine acetylation regulates the AT-rich DNA possession ability of H-NS.
Autorzy:
Liu Y; State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China.
Zhou M; State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China.
Bu Y; State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China.
Qin L; New Product R&D, GenScript Biotech Corporation, Nanjing 211100, China.
Zhang Y; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.; Shanghai Engineering Research Center of Maricultured Animal Vaccines, Shanghai 200237, China.; Laboratory of Aquatic Animal Diseases of MOA, Shanghai 200237, China.
Shao S; State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China.; Shanghai Engineering Research Center of Maricultured Animal Vaccines, Shanghai 200237, China.; Laboratory of Aquatic Animal Diseases of MOA, Shanghai 200237, China.
Wang Q; State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai 200237, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.; Shanghai Engineering Research Center of Maricultured Animal Vaccines, Shanghai 200237, China.; Laboratory of Aquatic Animal Diseases of MOA, Shanghai 200237, China.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 07. Date of Electronic Publication: 2023 Dec 07.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR.
Autorzy:
Baldoni PL; Bioinformatics Division, WEHI, Parkville, VIC 3052, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, VIC 3010, Australia.
Chen Y; Department of Medical Biology, The University of Melbourne, Parkville, VIC 3010, Australia.; ACRF Cancer Biology and Stem Cells Division, WEHI, Parkville, VIC 3052, Australia.
Hediyeh-Zadeh S; Bioinformatics Division, WEHI, Parkville, VIC 3052, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, VIC 3010, Australia.
Liao Y; Olivia Newton-John Cancer Research Institute, Heidelberg, VIC 3084, Australia.; School of Cancer Medicine, La Trobe University, Melbourne, VIC 3086, Australia.
Dong X; Department of Medical Biology, The University of Melbourne, Parkville, VIC 3010, Australia.; ACRF Cancer Biology and Stem Cells Division, WEHI, Parkville, VIC 3052, Australia.
Ritchie ME; Department of Medical Biology, The University of Melbourne, Parkville, VIC 3010, Australia.; Epigenetics and Development Division, WEHI, Parkville, VIC 3052, Australia.
Shi W; Olivia Newton-John Cancer Research Institute, Heidelberg, VIC 3084, Australia.; School of Cancer Medicine, La Trobe University, Melbourne, VIC 3086, Australia.
Smyth GK; Bioinformatics Division, WEHI, Parkville, VIC 3052, Australia.; School of Mathematics and Statistics, The University of Melbourne, Parkville, VIC 3010, Australia.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 07. Date of Electronic Publication: 2023 Dec 07.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Molecular mechanism of specific DNA sequence recognition by NRF1.
Autorzy:
Liu K; Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan 430079, PR China.
Li W; Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan 430079, PR China.
Xiao Y; Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan 430079, PR China.
Lei M; Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan 430079, PR China.
Zhang M; Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan 430079, PR China.
Min J; Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan 430079, PR China.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 06. Date of Electronic Publication: 2023 Dec 06.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
JMnorm: a novel joint multi-feature normalization method for integrative and comparative epigenomics.
Autorzy:
Xiang G; CAMP4 Therapeutics Corp., One Kendall Square, Building 1400 West, Cambridge, MA 02139, USA.
Guo Y; CAMP4 Therapeutics Corp., One Kendall Square, Building 1400 West, Cambridge, MA 02139, USA.
Bumcrot D; CAMP4 Therapeutics Corp., One Kendall Square, Building 1400 West, Cambridge, MA 02139, USA.
Sigova A; CAMP4 Therapeutics Corp., One Kendall Square, Building 1400 West, Cambridge, MA 02139, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 06. Date of Electronic Publication: 2023 Dec 06.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Spatial regulation of DNA damage tolerance protein Rad5 interconnects genome stability maintenance and proteostasis networks.
Autorzy:
Lehmann CP; Centro de Biología Molecular Severo Ochoa (CSIC/UAM), Cantoblanco. 28049-Madrid, Spain.
González-Fernández P; Centro de Biología Molecular Severo Ochoa (CSIC/UAM), Cantoblanco. 28049-Madrid, Spain.
Tercero JA; Centro de Biología Molecular Severo Ochoa (CSIC/UAM), Cantoblanco. 28049-Madrid, Spain.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 06. Date of Electronic Publication: 2023 Dec 06.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Exonic splicing code and coordination of divalent metals in proteins.
Autorzy:
Bakhtiar D; University of Southampton, Faculty of Medicine, Southampton SO16 6YD, UK.
Vondraskova K; Slovak Academy of Sciences, Centre of Biosciences, 840 05 Bratislava, Slovak Republic.
Pengelly RJ; University of Southampton, Faculty of Medicine, Southampton SO16 6YD, UK.
Chivers M; University of Southampton, Faculty of Medicine, Southampton SO16 6YD, UK.
Kralovicova J; University of Southampton, Faculty of Medicine, Southampton SO16 6YD, UK.; Slovak Academy of Sciences, Centre of Biosciences, 840 05 Bratislava, Slovak Republic.
Vorechovsky I; University of Southampton, Faculty of Medicine, Southampton SO16 6YD, UK.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 06. Date of Electronic Publication: 2023 Dec 06.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology.
Autorzy:
Cooper L; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.
Elser J; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.
Laporte MA; Digital Inclusion, Biodiversity International, 34397 Montpellier, France.
Arnaud E; Digital Inclusion, Biodiversity International, 34397 Montpellier, France.
Jaiswal P; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 06. Date of Electronic Publication: 2023 Dec 06.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
The previously uncharacterized RnpM (YlxR) protein modulates the activity of ribonuclease P in Bacillus subtilis in vitro.
Autorzy:
Wicke D; Department of General Microbiology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Neumann P; Department of Molecular Structural Biology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Gößringer M; Institute for the Pharmaceutical Chemistry, Philipps-University Marburg, Marburg, Germany.
Chernev A; Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Davydov S; Institute for the Pharmaceutical Chemistry, Philipps-University Marburg, Marburg, Germany.
Poehlein A; Department of Genomic and Applied Microbiology & Göttingen Genomics Laboratory, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Daniel R; Department of Genomic and Applied Microbiology & Göttingen Genomics Laboratory, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Urlaub H; Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.; Institute of Clinical Chemistry, GZMB, University Medical Centre Göttingen, Germany.; Cluster of Excellence 'Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells' (MBExC), Georg-August-University Göttingen, Germany.
Hartmann RK; Institute for the Pharmaceutical Chemistry, Philipps-University Marburg, Marburg, Germany.
Ficner R; Department of Molecular Structural Biology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Stülke J; Department of General Microbiology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 05. Date of Electronic Publication: 2023 Dec 05.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Contribution of tRNA sequence and modifications to the decoding preferences of E. coli and M. mycoides tRNAGlyUCC for synonymous glycine codons.
Autorzy:
Kompatscher M; Institute of Genomics and RNomics, Biocenter, Medical University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
Bartosik K; Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
Erharter K; Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
Plangger R; Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
Juen FS; Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
Kreutz C; Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
Micura R; Institute of Organic Chemistry, Center for Molecular Biosciences Innsbruck, University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
Westhof E; Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire, Architecture et Réactivité de l'ARN, CNRS UPR 9002, 2, allée Konrad Roentgen, F-67084 Strasbourg, France.
Erlacher MD; Institute of Genomics and RNomics, Biocenter, Medical University of Innsbruck, Innrain 80-82, 6020 Innsbruck, Austria.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 05. Date of Electronic Publication: 2023 Dec 05.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Using transition density models to interpret experimental optical spectra of exciton-coupled cyanine (iCy3)2 dimer probes of local DNA conformations at or near functional protein binding sites.
Autorzy:
Heussman D; Center for Optical, Molecular and Quantum Science, Department of Chemistry and Biochemistry, University of Oregon, Eugene, OR 97403, USA.; Institute of Molecular Biology, Department of Chemistry and Biochemistry, and University of Oregon, Eugene, OR 97403, USA.
Enkhbaatar L; Center for Optical, Molecular and Quantum Science, Department of Chemistry and Biochemistry, University of Oregon, Eugene, OR 97403, USA.; Institute of Molecular Biology, Department of Chemistry and Biochemistry, and University of Oregon, Eugene, OR 97403, USA.
Sorour MI; Department of Chemistry, Temple University, Philadelphia, PA 19122, USA.
Kistler KA; Department of Chemistry, Brandywine Campus, The Pennsylvania State University, Media, PA 19063, USA.
von Hippel PH; Institute of Molecular Biology, Department of Chemistry and Biochemistry, and University of Oregon, Eugene, OR 97403, USA.
Matsika S; Department of Chemistry, Temple University, Philadelphia, PA 19122, USA.
Marcus AH; Center for Optical, Molecular and Quantum Science, Department of Chemistry and Biochemistry, University of Oregon, Eugene, OR 97403, USA.; Institute of Molecular Biology, Department of Chemistry and Biochemistry, and University of Oregon, Eugene, OR 97403, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 05. Date of Electronic Publication: 2023 Dec 05.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Correction to 'TargetGene: a comprehensive database of cell-type-specific target genes for genetic variants'.
Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 05. Date of Electronic Publication: 2023 Dec 05.
Typ publikacji:
Published Erratum
Tytuł:
Differential roles of positive and negative supercoiling in organizing the E. coli genome.
Autorzy:
Fu Z; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA.
Guo MS; Department of Microbiology, University of Washington, Seattle, WA 98198, USA.
Zhou W; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA.
Xiao J; Department of Biophysics and Biophysical Chemistry, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 05. Date of Electronic Publication: 2023 Dec 05.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
A tailed mirtron promotes longevity in Drosophila.
Autorzy:
Khanal S; Cellular and Molecular Biology, School of Biological, Environmental, and Earth Sciences University of Southern Mississippi, USA.
de Cruz M; Cellular and Molecular Biology, School of Biological, Environmental, and Earth Sciences University of Southern Mississippi, USA.
Strickland B; Cellular and Molecular Biology, School of Biological, Environmental, and Earth Sciences University of Southern Mississippi, USA.
Mansfield K; Cellular and Molecular Biology, School of Biological, Environmental, and Earth Sciences University of Southern Mississippi, USA.
Lai EC; Department of Developmental Biology, Sloan Kettering Institute, USA.
Flynt A; Cellular and Molecular Biology, School of Biological, Environmental, and Earth Sciences University of Southern Mississippi, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 04. Date of Electronic Publication: 2023 Dec 04.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
The nuclease-associated short prokaryotic Argonaute system nonspecifically degrades DNA upon activation by target recognition.
Autorzy:
Lu X; Key Laboratory of Molecular Biophysics, the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China.
Xiao J; School of Pharmaceutical Sciences, Wuhan University, Wuhan, 430072, China.
Wang L; School of Pharmaceutical Sciences, Wuhan University, Wuhan, 430072, China.
Zhu B; Key Laboratory of Molecular Biophysics, the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China.; Shenzhen Huazhong University of Science and Technology Research Institute, Shenzhen 518063, China.
Huang F; Key Laboratory of Molecular Biophysics, the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 04. Date of Electronic Publication: 2023 Dec 04.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Post-transcriptional regulation shapes the transcriptome of quiescent budding yeast.
Autorzy:
Greenlaw AC; Basic Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.; Molecular and Cellular Biology Program, Fred Hutchinson Cancer Center and University of Washington, Seattle, WA 98195, USA.
Alavattam KG; Basic Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Tsukiyama T; Basic Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 04. Date of Electronic Publication: 2023 Dec 04.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Enzymic recognition of amino acids drove the evolution of primordial genetic codes.
Autorzy:
Douglas J; Department of Physics, The University of Auckland, New Zealand.; Centre for Computational Evolution, The University of Auckland, New Zealand.
Bouckaert R; Centre for Computational Evolution, The University of Auckland, New Zealand.; School of Computer Science, The University of Auckland, New Zealand.
Carter CW Jr; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, USA.
Wills PR; Department of Physics, The University of Auckland, New Zealand.; Centre for Computational Evolution, The University of Auckland, New Zealand.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Dec 04. Date of Electronic Publication: 2023 Dec 04.
Typ publikacji:
Journal Article
Czasopismo naukowe

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