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Wyszukujesz frazę ""Archaeal Proteins"" wg kryterium: Temat


Tytuł :
SepF is the FtsZ anchor in archaea, with features of an ancestral cell division system.
Autorzy :
Pende N; Evolutionary Biology of the Microbial Cell Unit, CNRS UMR2001, Department of Microbiology, Institut Pasteur, Paris, France.
Sogues A; Structural Microbiology Unit, Institut Pasteur, CNRS UMR 3528, Université de Paris, Paris, France.
Megrian D; Evolutionary Biology of the Microbial Cell Unit, CNRS UMR2001, Department of Microbiology, Institut Pasteur, Paris, France.; École Doctorale Complexité du vivant, Sorbonne University, Paris, France.
Sartori-Rupp A; Ultrastructural BioImaging Unit, Institut Pasteur, Paris, France.
England P; Plate-forme de biophysique moléculaire, C2RT-Institut Pasteur, CNRS, UMR 3528, Paris, France.
Palabikyan H; Archaea Physiology & Biotechnology Group, Department of Functional and Evolutionary Ecology, University of Vienna, Wien, Austria.
Rittmann SKR; Archaea Physiology & Biotechnology Group, Department of Functional and Evolutionary Ecology, University of Vienna, Wien, Austria.
Graña M; Bioinformatics Unit, Institut Pasteur of Montevideo, Montevideo, Uruguay.
Wehenkel AM; Structural Microbiology Unit, Institut Pasteur, CNRS UMR 3528, Université de Paris, Paris, France. .
Alzari PM; Structural Microbiology Unit, Institut Pasteur, CNRS UMR 3528, Université de Paris, Paris, France.
Gribaldo S; Evolutionary Biology of the Microbial Cell Unit, CNRS UMR2001, Department of Microbiology, Institut Pasteur, Paris, France. .
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Źródło :
Nature communications [Nat Commun] 2021 Jun 04; Vol. 12 (1), pp. 3214. Date of Electronic Publication: 2021 Jun 04.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Archaeal Proteins/*metabolism
Cell Division/*physiology
Methanobrevibacter/*metabolism
Archaeal Proteins/chemistry ; Archaeal Proteins/genetics ; Bacterial Proteins/chemistry ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Cell Cycle ; Cell Division/genetics ; Conserved Sequence ; Crystallography, X-Ray ; Evolution, Molecular ; Methanobrevibacter/genetics ; Methanobrevibacter/ultrastructure ; Microscopy, Electron, Transmission ; Models, Molecular ; Phylogeny ; Protein Binding ; Protein Interaction Domains and Motifs ; Protein Structure, Quaternary ; Recombinant Proteins/genetics ; Recombinant Proteins/metabolism ; Recombinant Proteins/ultrastructure
Czasopismo naukowe
Tytuł :
High-resolution structure of eukaryotic Fibrillarin interacting with Nop56 amino-terminal domain.
Autorzy :
Höfler S; Leibniz University Hannover, Institute for Organic Chemistry and Centre for Biomolecular Drug Research (BMWZ), D-30167 Hannover, Germany.
Lukat P; Helmholtz Centre for Infection Research, Department of Structure and Function of Proteins, D-38124 Braunschweig, Germany.
Blankenfeldt W; Helmholtz Centre for Infection Research, Department of Structure and Function of Proteins, D-38124 Braunschweig, Germany.
Carlomagno T; Leibniz University Hannover, Institute for Organic Chemistry and Centre for Biomolecular Drug Research (BMWZ), D-30167 Hannover, Germany.; Helmholtz Centre for Infection Research, Group of NMR-based Structural Chemistry, D-38124 Braunschweig, Germany.
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Źródło :
RNA (New York, N.Y.) [RNA] 2021 Apr; Vol. 27 (4), pp. 496-512. Date of Electronic Publication: 2021 Jan 22.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Archaeal Proteins/*chemistry
Chromosomal Proteins, Non-Histone/*chemistry
Nuclear Proteins/*chemistry
Pyrococcus furiosus/*genetics
Ribonucleoproteins, Small Nucleolar/*chemistry
Saccharomyces cerevisiae/*genetics
Saccharomyces cerevisiae Proteins/*chemistry
Amino Acid Sequence ; Archaeal Proteins/genetics ; Archaeal Proteins/metabolism ; Binding Sites ; Chromosomal Proteins, Non-Histone/genetics ; Chromosomal Proteins, Non-Histone/metabolism ; Crystallography, X-Ray ; Gene Expression ; Methylation ; Models, Molecular ; Nuclear Proteins/genetics ; Nuclear Proteins/metabolism ; Protein Binding ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Protein Interaction Domains and Motifs ; Pyrococcus furiosus/metabolism ; RNA, Fungal/genetics ; RNA, Fungal/metabolism ; RNA, Guide/genetics ; RNA, Guide/metabolism ; RNA, Ribosomal/genetics ; RNA, Ribosomal/metabolism ; RNA, Small Nucleolar/genetics ; RNA, Small Nucleolar/metabolism ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Recombinant Proteins/metabolism ; Ribonucleoproteins, Small Nuclear/chemistry ; Ribonucleoproteins, Small Nuclear/genetics ; Ribonucleoproteins, Small Nuclear/metabolism ; Ribonucleoproteins, Small Nucleolar/genetics ; Ribonucleoproteins, Small Nucleolar/metabolism ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/genetics ; Saccharomyces cerevisiae Proteins/metabolism ; Sequence Alignment ; Structural Homology, Protein
Czasopismo naukowe
Tytuł :
Archaea: The Final Frontier of Chromatin.
Autorzy :
Laursen SP; Department of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, CO 80303, United States.
Bowerman S; Department of Biochemistry, University of Colorado Boulder, Boulder, CO 80309, United States.
Luger K; Department of Biochemistry, University of Colorado Boulder, Boulder, CO 80309, United States; Howard Hughes Medical Institute, Chevy Chase, MD 20815, United States. Electronic address: .
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Źródło :
Journal of molecular biology [J Mol Biol] 2021 Mar 19; Vol. 433 (6), pp. 166791. Date of Electronic Publication: 2020 Dec 29.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Archaea/*genetics
Archaeal Proteins/*chemistry
Chromatin/*ultrastructure
DNA, Archaeal/*chemistry
DNA-Binding Proteins/*chemistry
Histones/*chemistry
Amino Acid Sequence ; Archaea/classification ; Archaea/metabolism ; Archaeal Proteins/genetics ; Archaeal Proteins/metabolism ; Chromatin/chemistry ; Chromatin/metabolism ; Conserved Sequence ; DNA, Archaeal/genetics ; DNA, Archaeal/metabolism ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Histones/genetics ; Histones/metabolism ; Nucleic Acid Conformation ; Phylogeny ; Protein Binding ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Protein Interaction Domains and Motifs ; Protein Multimerization
Czasopismo naukowe
Tytuł :
ADP-dependent glucose/glucosamine kinase from Thermococcus kodakarensis: cloning and characterization.
Autorzy :
Shakir NA; School of Biological Sciences, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan.
Aslam M; School of Biological Sciences, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan.
Bibi T; School of Biological Sciences, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan.
Rashid N; School of Biological Sciences, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan. Electronic address: .
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Źródło :
International journal of biological macromolecules [Int J Biol Macromol] 2021 Mar 15; Vol. 173, pp. 168-179. Date of Electronic Publication: 2021 Jan 11.
Typ publikacji :
Journal Article
MeSH Terms :
Adenosine Diphosphate/*chemistry
Adenosine Diphosphate Glucose/*chemistry
Archaeal Proteins/*chemistry
Glucokinase/*chemistry
Glucosamine/*chemistry
Glucose/*chemistry
Thermococcus/*enzymology
Adenosine Diphosphate/metabolism ; Adenosine Diphosphate Glucose/metabolism ; Amino Acid Sequence ; Archaeal Proteins/genetics ; Archaeal Proteins/metabolism ; Binding Sites ; Biocatalysis ; Cloning, Molecular ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Gene Expression ; Genetic Vectors/chemistry ; Genetic Vectors/metabolism ; Glucokinase/genetics ; Glucokinase/metabolism ; Glucosamine/metabolism ; Glucose/metabolism ; Kinetics ; Molecular Docking Simulation ; Protein Binding ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Protein Interaction Domains and Motifs ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Recombinant Proteins/metabolism ; Sequence Alignment ; Sequence Homology, Amino Acid ; Substrate Specificity ; Thermococcus/chemistry ; Thermodynamics
Czasopismo naukowe
Tytuł :
Characterization of a novel type III alcohol dehydrogenase from Thermococcus barophilus Ch5.
Autorzy :
Zhang L; Guangling College, Yangzhou University, China; College of Environmental Science and Engineering, Marine Science & Technology Institute, Yangzhou University, China. Electronic address: .
Jiang D; College of Environmental Science and Engineering, Marine Science & Technology Institute, Yangzhou University, China.
Li Y; College of Environmental Science and Engineering, Marine Science & Technology Institute, Yangzhou University, China.
Wu L; College of Environmental Science and Engineering, Marine Science & Technology Institute, Yangzhou University, China.
Liu Q; College of Environmental Science and Engineering, Marine Science & Technology Institute, Yangzhou University, China.
Dong K; College of Environmental Science and Engineering, Marine Science & Technology Institute, Yangzhou University, China.
Oger P; Univ Lyon, INSA de Lyon, CNRS UMR 5240, Villeurbanne, France. Electronic address: .
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Źródło :
International journal of biological macromolecules [Int J Biol Macromol] 2021 Feb 28; Vol. 171, pp. 491-501. Date of Electronic Publication: 2021 Jan 08.
Typ publikacji :
Journal Article
MeSH Terms :
Aldehyde Oxidoreductases/*isolation & purification
Archaeal Proteins/*isolation & purification
Thermococcus/*enzymology
Alcohols/metabolism ; Aldehyde Oxidoreductases/genetics ; Aldehyde Oxidoreductases/metabolism ; Amino Acid Motifs ; Amino Acid Sequence ; Archaeal Proteins/genetics ; Archaeal Proteins/metabolism ; Base Sequence ; Cations/pharmacology ; Circular Dichroism ; Conserved Sequence ; Genes, Archaeal ; Hot Temperature ; Hydrogen-Ion Concentration ; Kinetics ; Mutagenesis, Site-Directed ; Phylogeny ; Protein Denaturation ; Recombinant Proteins/metabolism ; Sequence Alignment ; Sequence Homology, Amino Acid ; Substrate Specificity ; Thermococcales/enzymology ; Thermococcales/genetics ; Thermococcus/genetics
Czasopismo naukowe
Tytuł :
Methyl/alkyl-coenzyme M reductase-based anaerobic alkane oxidation in archaea.
Autorzy :
Wang Y; State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.; State Key Laboratory of Ocean Engineering, School of Naval Architecture, Ocean & Civil Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.
Wegener G; Max Planck Institute for Marine Microbiology, Bremen, Germany.; MARUM, Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.
Ruff SE; Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA, USA.; J. Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, USA.
Wang F; State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.; School of Oceanography, Shanghai Jiao Tong University, Shanghai, 200240, China.; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, Guangdong, China.
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Źródło :
Environmental microbiology [Environ Microbiol] 2021 Feb; Vol. 23 (2), pp. 530-541. Date of Electronic Publication: 2020 May 18.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Alkanes/*metabolism
Archaea/*enzymology
Archaeal Proteins/*metabolism
Oxidoreductases/*metabolism
Anaerobiosis ; Archaea/chemistry ; Archaea/classification ; Archaea/genetics ; Archaeal Proteins/chemistry ; Archaeal Proteins/genetics ; Oxidation-Reduction ; Oxidoreductases/chemistry ; Oxidoreductases/genetics ; Phylogeny
Czasopismo naukowe
Tytuł :
Severe Corrosion of Carbon Steel in Oil Field Produced Water Can Be Linked to Methanogenic Archaea Containing a Special Type of [NiFe] Hydrogenase.
Autorzy :
Lahme S; ExxonMobil Upstream Research Company, Spring, Texas, USA .
Mand J; ExxonMobil Upstream Research Company, Spring, Texas, USA.
Longwell J; ExxonMobil Upstream Research Company, Spring, Texas, USA.
Smith R; ExxonMobil Upstream Research Company, Spring, Texas, USA.
Enning D; ExxonMobil Upstream Research Company, Spring, Texas, USA .
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Źródło :
Applied and environmental microbiology [Appl Environ Microbiol] 2021 Jan 15; Vol. 87 (3). Date of Electronic Publication: 2021 Jan 15 (Print Publication: 2021).
Typ publikacji :
Journal Article
MeSH Terms :
Industrial Waste*
Oil and Gas Fields*
Archaeal Proteins/*chemistry
Hydrogenase/*chemistry
Steel/*chemistry
Waste Water/*microbiology
Archaea/genetics ; Archaea/metabolism ; Archaeal Proteins/genetics ; Archaeal Proteins/metabolism ; Carbon ; Corrosion ; Hydrogenase/genetics ; Hydrogenase/metabolism ; Methane/metabolism ; Polymerase Chain Reaction ; RNA, Ribosomal, 16S/genetics
Czasopismo naukowe
Tytuł :
Transcript Regulation of the Recoded Archaeal α-l-Fucosidase In Vivo.
Autorzy :
De Lise F; Institute of Biosciences and BioResources, National Research Council of Italy, Via P. Castellino 111, 80131 Naples, Italy.
Iacono R; Institute of Biosciences and BioResources, National Research Council of Italy, Via P. Castellino 111, 80131 Naples, Italy.; Department of Biology, University of Naples 'Federico II', Complesso Universitario Di Monte S. Angelo, Via Cupa Nuova Cinthia 21, 80126 Naples, Italy.
Strazzulli A; Department of Biology, University of Naples 'Federico II', Complesso Universitario Di Monte S. Angelo, Via Cupa Nuova Cinthia 21, 80126 Naples, Italy.; Task Force on Microbiome Studies, University of Naples Federico II, 80134 Naples, Italy.
Giglio R; Institute of Biosciences and BioResources, National Research Council of Italy, Via P. Castellino 111, 80131 Naples, Italy.
Curci N; Institute of Biosciences and BioResources, National Research Council of Italy, Via P. Castellino 111, 80131 Naples, Italy.; Department of Biology, University of Naples 'Federico II', Complesso Universitario Di Monte S. Angelo, Via Cupa Nuova Cinthia 21, 80126 Naples, Italy.
Maurelli L; Institute of Biosciences and BioResources, National Research Council of Italy, Via P. Castellino 111, 80131 Naples, Italy.
Avino R; National Institute of Geophysics and Volcanology, Via Diocleziano, 328, 80125 Naples, Italy.
Carandente A; National Institute of Geophysics and Volcanology, Via Diocleziano, 328, 80125 Naples, Italy.
Caliro S; National Institute of Geophysics and Volcanology, Via Diocleziano, 328, 80125 Naples, Italy.
Tortora A; Kayser Italia Srl., Via di Popogna, 501, 57128 Livorno, Italy.
Lorenzini F; Kayser Italia Srl., Via di Popogna, 501, 57128 Livorno, Italy.
Di Donato P; Institute of Biomolecular Chemistry, National Research Council of Italy, Via Campi Flegrei 34, 80078 Pozzuoli, Italy.; Department of Science and Technology, University of Naples 'Parthenope', Centro Direzionale Isola C4, 80143 Naples, Italy.
Moracci M; Institute of Biosciences and BioResources, National Research Council of Italy, Via P. Castellino 111, 80131 Naples, Italy.; Department of Biology, University of Naples 'Federico II', Complesso Universitario Di Monte S. Angelo, Via Cupa Nuova Cinthia 21, 80126 Naples, Italy.; Task Force on Microbiome Studies, University of Naples Federico II, 80134 Naples, Italy.
Cobucci-Ponzano B; Institute of Biosciences and BioResources, National Research Council of Italy, Via P. Castellino 111, 80131 Naples, Italy.
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Źródło :
Molecules (Basel, Switzerland) [Molecules] 2021 Mar 25; Vol. 26 (7). Date of Electronic Publication: 2021 Mar 25.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Expression Regulation, Archaeal*
Gene Expression Regulation, Enzymologic*
Protein Biosynthesis*
Archaeal Proteins/*biosynthesis
Sulfolobaceae/*enzymology
alpha-L-Fucosidase/*biosynthesis
Archaeal Proteins/genetics ; Cold-Shock Response ; Sulfolobaceae/genetics ; alpha-L-Fucosidase/genetics
Czasopismo naukowe
Tytuł :
PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations.
Autorzy :
Lau WYV; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.
Hoad GR; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.
Jin V; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.
Winsor GL; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.
Madyan A; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.
Gray KL; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.
Laird MR; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.
Lo R; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.
Brinkman FSL; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D803-D808.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Protein*
Archaeal Proteins/*metabolism
Bacterial Proteins/*metabolism
Amino Acid Sequence ; Archaeal Proteins/chemistry ; Bacterial Proteins/chemistry ; Cell Wall/chemistry ; Protein Transport ; Subcellular Fractions/metabolism ; User-Computer Interface
Czasopismo naukowe
Tytuł :
The high-energy transition state of the glutamate transporter homologue GltPh.
Autorzy :
Huysmans GHM; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; Mass Spectrometry for Biology Unit, USR 2000, CNRS, Institut Pasteur, Paris, France.
Ciftci D; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; Tri-Institutional Training Program in Chemical Biology, New York, NY, USA.
Wang X; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.
Blanchard SC; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; Tri-Institutional Training Program in Chemical Biology, New York, NY, USA.; St. Jude Children's Research Hospital, Memphis, TN, USA.
Boudker O; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; Tri-Institutional Training Program in Chemical Biology, New York, NY, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA.
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Źródło :
The EMBO journal [EMBO J] 2021 Jan 04; Vol. 40 (1), pp. e105415. Date of Electronic Publication: 2020 Nov 13.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Amino Acid Transport System X-AG/*metabolism
Archaeal Proteins/*metabolism
Biological Transport/*physiology
Amino Acid Transport System X-AG/genetics ; Archaea/genetics ; Archaea/metabolism ; Archaeal Proteins/genetics ; Biological Transport/genetics ; Computational Biology/methods ; Gain of Function Mutation/genetics ; Models, Molecular ; Pyrococcus horikoshii/genetics ; Pyrococcus horikoshii/metabolism ; Substrate Specificity/genetics
Czasopismo naukowe
Tytuł :
Prokaryotic viperins produce diverse antiviral molecules.
Autorzy :
Bernheim A; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Millman A; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Ofir G; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Meitav G; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Avraham C; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Shomar H; Pantheon Biosciences, Yavne, Israel.
Rosenberg MM; Pantheon Biosciences, Yavne, Israel.
Tal N; Pantheon Biosciences, Yavne, Israel.
Melamed S; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Amitai G; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Sorek R; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel. .
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Źródło :
Nature [Nature] 2021 Jan; Vol. 589 (7840), pp. 120-124. Date of Electronic Publication: 2020 Sep 16.
Typ publikacji :
Journal Article
MeSH Terms :
Evolution, Molecular*
Antiviral Agents/*metabolism
Archaeal Proteins/*metabolism
Bacterial Proteins/*metabolism
Bacteriophage T7/*immunology
Prokaryotic Cells/*metabolism
Proteins/*metabolism
Antiviral Agents/immunology ; Archaeal Proteins/chemistry ; Bacteria/immunology ; Bacteria/metabolism ; Bacteria/virology ; Bacterial Proteins/chemistry ; Bacteriophage T7/enzymology ; Bacteriophage T7/physiology ; DNA-Directed DNA Polymerase/metabolism ; Humans ; Prokaryotic Cells/immunology ; Prokaryotic Cells/virology ; Proteins/chemistry ; Proteins/genetics ; Ribonucleotides/biosynthesis ; Ribonucleotides/chemistry ; Ribonucleotides/metabolism ; Transcription, Genetic/drug effects
Czasopismo naukowe
Tytuł :
Reaction mechanism catalyzed by the dissimilatory adenosine 5'-phosphosulfate reductase. Adenosine 5'-monophosphate inhibitor and key role of arginine 317 in switching the course of catalysis.
Autorzy :
Wójcik-Augustyn A; Department of Computational Biophysics and Bioinformatics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University ul. Gronostajowa 7, 30-387 Cracow, Poland. Electronic address: .
Johansson AJ; Swedish Nuclear Fuel and Waste Management Co (SKB), Box 3091, 169 03 Solna, Sweden. Electronic address: .
Borowski T; Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, ul. Niezapominajek, 8, 30-239 Cracow, Poland. Electronic address: .
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Źródło :
Biochimica et biophysica acta. Bioenergetics [Biochim Biophys Acta Bioenerg] 2021 Jan 01; Vol. 1862 (1), pp. 148333. Date of Electronic Publication: 2020 Oct 31.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Adenosine Monophosphate/*chemistry
Adenosine Phosphosulfate/*chemistry
Archaeal Proteins/*chemistry
Archaeoglobus fulgidus/*enzymology
Adenosine Monophosphate/metabolism ; Adenosine Phosphosulfate/metabolism ; Archaeal Proteins/metabolism ; Arginine/chemistry ; Arginine/metabolism ; Catalysis
Czasopismo naukowe
Tytuł :
Investigation of central energy metabolism-related protein complexes of ANME-2d methanotrophic archaea by complexome profiling.
Autorzy :
Berger S; Institute for Wetland and Water Research, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, the Netherlands. Electronic address: .
Cabrera-Orefice A; Molecular Bioenergetics Group, Radboud Institute for Molecular Life Sciences, Department of Pediatrics, Radboud University Medical Center, Geert-Grooteplein Zuid 10, 6525 GA Nijmegen, the Netherlands.
Jetten MSM; Institute for Wetland and Water Research, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, the Netherlands. Electronic address: .
Brandt U; Molecular Bioenergetics Group, Radboud Institute for Molecular Life Sciences, Department of Pediatrics, Radboud University Medical Center, Geert-Grooteplein Zuid 10, 6525 GA Nijmegen, the Netherlands. Electronic address: .
Welte CU; Institute for Wetland and Water Research, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, the Netherlands. Electronic address: .
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Źródło :
Biochimica et biophysica acta. Bioenergetics [Biochim Biophys Acta Bioenerg] 2021 Jan 01; Vol. 1862 (1), pp. 148308. Date of Electronic Publication: 2020 Sep 28.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Energy Metabolism*
Archaea/*enzymology
Archaeal Proteins/*metabolism
Archaeal Proteins/chemistry ; Electron Transport
Czasopismo naukowe
Tytuł :
Gene cloning, expression enhancement in Escherichia coli and biochemical characterization of a highly thermostable amylomaltase from Pyrobaculum calidifontis.
Autorzy :
Mehboob S; School of Biological Sciences, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan; Kinnaird College for Women, 93 Jail Road, Lahore 54000, Pakistan.
Ahmad N; School of Biological Sciences, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan.
Munir S; Kinnaird College for Women, 93 Jail Road, Lahore 54000, Pakistan.
Ali R; School of Biological Sciences, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan.
Younas H; Kinnaird College for Women, 93 Jail Road, Lahore 54000, Pakistan.
Rashid N; School of Biological Sciences, University of the Punjab, Quaid-e-Azam Campus, Lahore 54590, Pakistan. Electronic address: .
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Źródło :
International journal of biological macromolecules [Int J Biol Macromol] 2020 Dec 15; Vol. 165 (Pt A), pp. 645-653. Date of Electronic Publication: 2020 Sep 17.
Typ publikacji :
Journal Article
MeSH Terms :
Archaeal Proteins*/biosynthesis
Archaeal Proteins*/chemistry
Archaeal Proteins*/genetics
Archaeal Proteins*/isolation & purification
Cloning, Molecular*
Gene Expression*
Glycogen Debranching Enzyme System*/biosynthesis
Glycogen Debranching Enzyme System*/chemistry
Glycogen Debranching Enzyme System*/genetics
Glycogen Debranching Enzyme System*/isolation & purification
Hot Temperature*
Pyrobaculum*/enzymology
Pyrobaculum*/genetics
Enzyme Stability ; Escherichia coli/enzymology ; Escherichia coli/genetics ; Recombinant Proteins/biosynthesis ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Recombinant Proteins/isolation & purification
Czasopismo naukowe
Tytuł :
Structural basis for unique color tuning mechanism in heliorhodopsin.
Autorzy :
Tanaka T; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan.
Singh M; Department of Life Science and Applied Chemistry, Nagoya Institute of Technology, Showa, Nagoya, 466-8555, Japan.
Shihoya W; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan. Electronic address: .
Yamashita K; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan.
Kandori H; Department of Life Science and Applied Chemistry, Nagoya Institute of Technology, Showa, Nagoya, 466-8555, Japan; OptoBioTechnology Research Center, Nagoya Institute of Technology, Showa, Nagoya, 466-8555, Japan. Electronic address: .
Nureki O; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan. Electronic address: .
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Źródło :
Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2020 Dec 10; Vol. 533 (3), pp. 262-267. Date of Electronic Publication: 2020 Sep 18.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Amino Acid Substitution*
Archaeal Proteins/*chemistry
Retinaldehyde/*chemistry
Rhodopsins, Microbial/*chemistry
Thermoplasmales/*chemistry
Archaeal Proteins/genetics ; Archaeal Proteins/metabolism ; Binding Sites ; Cloning, Molecular ; Color ; Crystallography, X-Ray ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Gene Expression ; Genetic Vectors/chemistry ; Genetic Vectors/metabolism ; Models, Molecular ; Mutation ; Protein Binding ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Protein Interaction Domains and Motifs ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Recombinant Proteins/metabolism ; Retinaldehyde/metabolism ; Rhodopsins, Microbial/genetics ; Rhodopsins, Microbial/metabolism ; Schiff Bases/chemistry
Czasopismo naukowe
Tytuł :
A substrate binding model for the KEOPS tRNA modifying complex.
Autorzy :
Beenstock J; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.
Ona SM; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Porat J; Department of Biology, York University, Toronto, ON, Canada.
Orlicky S; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.
Wan LCK; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Ceccarelli DF; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.
Maisonneuve P; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.
Szilard RK; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.
Yin Z; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.; Department of Biochemistry, University of Toronto, Toronto, ON, Canada.
Setiaputra D; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.
Mao DYL; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.
Khan M; Department of Chemistry, University of Calgary, Calgary, AB, Canada.
Raval S; Department of Chemistry, University of Calgary, Calgary, AB, Canada.
Schriemer DC; Department of Chemistry, University of Calgary, Calgary, AB, Canada.; Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, AB, Canada.
Bayfield MA; Department of Biology, York University, Toronto, ON, Canada.
Durocher D; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada.; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Sicheri F; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada. .; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada. .; Department of Biochemistry, University of Toronto, Toronto, ON, Canada. .
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Źródło :
Nature communications [Nat Commun] 2020 Dec 04; Vol. 11 (1), pp. 6233. Date of Electronic Publication: 2020 Dec 04.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Archaeal Proteins/*chemistry
Methanocaldococcus/*metabolism
Multiprotein Complexes/*chemistry
RNA, Transfer/*chemistry
Archaeal Proteins/genetics ; Archaeal Proteins/metabolism ; Crystallography, X-Ray ; Methanocaldococcus/genetics ; Models, Molecular ; Multiprotein Complexes/genetics ; Multiprotein Complexes/metabolism ; Nucleic Acid Conformation ; Protein Binding ; Protein Domains ; RNA, Transfer/genetics ; RNA, Transfer/metabolism ; RNA, Transfer, Lys/chemistry ; RNA, Transfer, Lys/genetics ; RNA, Transfer, Lys/metabolism
Czasopismo naukowe
Tytuł :
Novel ribonucleotide discrimination in the RNA polymerase-like two-barrel catalytic core of Family D DNA polymerases.
Autorzy :
Zatopek KM; New England Biolabs, 240 County Road Ipswich, MA 01938, USA.
Alpaslan E; New England Biolabs, 240 County Road Ipswich, MA 01938, USA.
Evans TC; New England Biolabs, 240 County Road Ipswich, MA 01938, USA.
Sauguet L; Institut Pasteur, Unité de Dynamique Structurale des Macromolécules, 75015 Paris, France.
Gardner AF; New England Biolabs, 240 County Road Ipswich, MA 01938, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Dec 02; Vol. 48 (21), pp. 12204-12218.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Regulation, Archaeal*
Genome, Archaeal*
Archaeal Proteins/*genetics
DNA, Archaeal/*genetics
DNA-Directed DNA Polymerase/*genetics
Ribonucleotides/*genetics
Thermococcus/*genetics
Amino Acid Sequence ; Archaeal Proteins/chemistry ; Archaeal Proteins/metabolism ; Binding Sites ; Catalytic Domain ; Cloning, Molecular ; DNA Replication ; DNA, Archaeal/metabolism ; DNA-Directed DNA Polymerase/chemistry ; DNA-Directed DNA Polymerase/metabolism ; Gene Expression ; Histidine/chemistry ; Histidine/metabolism ; Kinetics ; Models, Molecular ; Mutation ; Protein Binding ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Protein Interaction Domains and Motifs ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Recombinant Proteins/metabolism ; Ribonucleotides/chemistry ; Ribonucleotides/metabolism ; Sequence Alignment ; Sequence Homology, Amino Acid ; Substrate Specificity ; Thermococcus/enzymology
Czasopismo naukowe
Tytuł :
Structural basis for inhibition of an archaeal CRISPR-Cas type I-D large subunit by an anti-CRISPR protein.
Autorzy :
Manav MC; Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10c, DK-8000, Aarhus C, Denmark.; MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK.
Van LB; Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10c, DK-8000, Aarhus C, Denmark.
Lin J; Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200, København N, Denmark.
Fuglsang A; Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200, København N, Denmark.
Peng X; Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200, København N, Denmark. .
Brodersen DE; Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10c, DK-8000, Aarhus C, Denmark. .
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Źródło :
Nature communications [Nat Commun] 2020 Nov 25; Vol. 11 (1), pp. 5993. Date of Electronic Publication: 2020 Nov 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Archaeal Proteins/*antagonists & inhibitors
CRISPR-Associated Proteins/*antagonists & inhibitors
Repressor Proteins/*metabolism
Sulfolobus/*genetics
Viral Proteins/*metabolism
Archaeal Proteins/metabolism ; Archaeal Proteins/ultrastructure ; CRISPR-Associated Proteins/metabolism ; CRISPR-Associated Proteins/ultrastructure ; CRISPR-Cas Systems/genetics ; DNA Cleavage ; Host-Pathogen Interactions/genetics ; Protein Domains/genetics ; Repressor Proteins/genetics ; Rudiviridae/genetics ; Rudiviridae/metabolism ; Rudiviridae/pathogenicity ; Sulfolobus/virology ; Viral Proteins/genetics ; Viral Proteins/ultrastructure
Czasopismo naukowe
Tytuł :
iCLIP analysis of RNA substrates of the archaeal exosome.
Autorzy :
Bathke J; Institute of Microbiology and Molecular Biology, Justus-Liebig-University, 35392, Giessen, Germany.; Institute of Bioinformatics and Systems Biology, Justus-Liebig-University, 35392, Giessen, Germany.
Gauernack AS; Institute of Microbiology and Molecular Biology, Justus-Liebig-University, 35392, Giessen, Germany.
Rupp O; Institute of Bioinformatics and Systems Biology, Justus-Liebig-University, 35392, Giessen, Germany.
Weber L; Institute of Microbiology and Molecular Biology, Justus-Liebig-University, 35392, Giessen, Germany.
Preusser C; Institute of Biochemistry, Justus-Liebig-University, 35392, Giessen, Germany.
Lechner M; Center for Synthetic Microbiology & Department of Pharmaceutical Chemistry, Philipps-University Marburg, 35032, Marburg, Germany.
Rossbach O; Institute of Biochemistry, Justus-Liebig-University, 35392, Giessen, Germany.
Goesmann A; Institute of Bioinformatics and Systems Biology, Justus-Liebig-University, 35392, Giessen, Germany.
Evguenieva-Hackenberg E; Institute of Microbiology and Molecular Biology, Justus-Liebig-University, 35392, Giessen, Germany. .
Klug G; Institute of Microbiology and Molecular Biology, Justus-Liebig-University, 35392, Giessen, Germany.
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Źródło :
BMC genomics [BMC Genomics] 2020 Nov 16; Vol. 21 (1), pp. 797. Date of Electronic Publication: 2020 Nov 16.
Typ publikacji :
Journal Article
MeSH Terms :
Archaeal Proteins*/genetics
Archaeal Proteins*/metabolism
Exosomes*/genetics
Exosomes*/metabolism
Sulfolobus solfataricus*/genetics
Sulfolobus solfataricus*/metabolism
Exosome Multienzyme Ribonuclease Complex/genetics ; Exosome Multienzyme Ribonuclease Complex/metabolism ; RNA/genetics ; RNA Stability ; RNA, Archaeal/genetics
Czasopismo naukowe
Tytuł :
Large domain movements through the lipid bilayer mediate substrate release and inhibition of glutamate transporters.
Autorzy :
Wang X; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, United States.
Boudker O; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, United States.; Howard Hughes Medical Institute, Chevy Chase, United States.
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Źródło :
ELife [Elife] 2020 Nov 06; Vol. 9. Date of Electronic Publication: 2020 Nov 06.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Amino Acid Transport System X-AG/*chemistry
Amino Acid Transport System X-AG/*metabolism
Archaeal Proteins/*chemistry
Archaeal Proteins/*metabolism
Pyrococcus horikoshii/*metabolism
Amino Acid Transport System X-AG/genetics ; Archaeal Proteins/genetics ; Biological Transport ; Cryoelectron Microscopy ; Glutamic Acid/chemistry ; Glutamic Acid/metabolism ; Kinetics ; Lipid Bilayers/chemistry ; Lipid Bilayers/metabolism ; Models, Molecular ; Protein Domains ; Pyrococcus horikoshii/chemistry ; Pyrococcus horikoshii/genetics ; Sodium/chemistry ; Sodium/metabolism
Czasopismo naukowe

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