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Wyszukujesz frazę ""BMC Bioinformatics"" wg kryterium: JN


Tytuł :
IIMLP: integrated information-entropy-based method for LncRNA prediction.
Autorzy :
Li J; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China. .
Li H; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China.
Ye X; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China.
Zhang L; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China.
Xu Q; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China.
Ping Y; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China.
Jing X; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China.
Jiang W; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China.
Liao Q; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China.
Liu B; Center for Bioinformatics, School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001, Heilongjiang, China.
Wang Y; School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, Guangdong, China. .; Center for Bioinformatics, School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001, Heilongjiang, China. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 13; Vol. 22 (Suppl 3), pp. 243. Date of Electronic Publication: 2021 May 13.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
DSCMF: prediction of LncRNA-disease associations based on dual sparse collaborative matrix factorization.
Autorzy :
Liu JX; School of Computer Science, Qufu Normal University, Rizhao, China.
Gao MM; School of Computer Science, Qufu Normal University, Rizhao, China.
Cui Z; School of Computer Science, Qufu Normal University, Rizhao, China.
Gao YL; Qufu Normal University Library, Qufu Normal University, Rizhao, China. .
Li F; School of Computer Science, Qufu Normal University, Rizhao, China.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 12; Vol. 22 (Suppl 3), pp. 241. Date of Electronic Publication: 2021 May 12.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training.
Autorzy :
Mostavi M; Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX, 78229, USA.; Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX, 78249, USA.
Chiu YC; Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX, 78229, USA.
Chen Y; Greehey Children's Cancer Research Institute, University of Texas Health San Antonio, San Antonio, TX, 78229, USA. .; Department of Population Health Sciences, University of Texas Health San Antonio, San Antonio, TX, 78229, USA. .
Huang Y; Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX, 78249, USA. .; Department of Population Health Sciences, University of Texas Health San Antonio, San Antonio, TX, 78229, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 12; Vol. 22 (1), pp. 244. Date of Electronic Publication: 2021 May 12.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
PlncRNA-HDeep: plant long noncoding RNA prediction using hybrid deep learning based on two encoding styles.
Autorzy :
Meng J; School of Computer Science and Technology, Dalian University of Technology, Dalian, 116024, Liaoning, China.
Kang Q; School of Computer Science and Technology, Dalian University of Technology, Dalian, 116024, Liaoning, China.
Chang Z; School of Computer Science and Technology, Dalian University of Technology, Dalian, 116024, Liaoning, China.
Luan Y; School of Bioengineering, Dalian University of Technology, Dalian, 116024, Liaoning, China. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 12; Vol. 22 (Suppl 3), pp. 242. Date of Electronic Publication: 2021 May 12.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
Combining genetic algorithm with machine learning strategies for designing potent antimicrobial peptides.
Autorzy :
Boone K; Bioengineering Program, University of Kansas, Institute of Bioengineering Research, University of Kansas, 1530 W 15th Street, Learned Hall, Room 5109, Lawrence, KS, 66045, USA.
Wisdom C; Bioengineering Program, University of Kansas, Institute of Bioengineering Research, University of Kansas, 1530 W 15th Street, Learned Hall, Room 5109, Lawrence, KS, 66045, USA.
Camarda K; Chemical and Petroleum Engineering Department, University of Kansas, 1530 West 15th Street, Learned Hall, Room 4154, Lawrence, KS, 66045, USA.
Spencer P; Mechanical Engineering Department, University of Kansas, 1530 West 15th Street, Learned Hall, Room 3111, Lawrence, KS, 66045, USA.; Institute of Bioengineering Research, University of Kansas, 1530 West 15th Street, Learned Hall, Room 3111, Lawrence, KS, 66045, USA.
Tamerler C; Mechanical Engineering Department, University of Kansas, 1530 W 15th St, Learned Hall, Room 3135A, Lawrence, KS, 66045, USA. .; Institute of Bioengineering Research, University of Kansas, 1530 W 15th St, Learned Hall, Room 3135A, Lawrence, KS, 66045, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 11; Vol. 22 (1), pp. 239. Date of Electronic Publication: 2021 May 11.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
A detailed map of coupled circadian clock and cell cycle with qualitative dynamics validation.
Autorzy :
Rougny A; Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST), Aomi, Tokyo, Japan.; Computational Bio Big Data Open Innovation Laboratory (CBBD-OIL), AIST, Aomi, Tokyo, Japan.
Paulevé L; Bordeaux INP, CNRS, LaBRI, UMR5800, Univ. Bordeaux, 33400, Talence, France.
Teboul M; CNRS, INSERM, iBV, Université Côte d'Azur, Nice, France.
Delaunay F; CNRS, INSERM, iBV, Université Côte d'Azur, Nice, France. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 11; Vol. 22 (1), pp. 240. Date of Electronic Publication: 2021 May 11.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
tRNA-derived fragments as novel potential biomarkers for relapsed/refractory multiple myeloma.
Autorzy :
Xu C; Department of Hematology, The Third Xiangya Hospital of Central South University, Changsha, 410000, China.
Liang T; Department of Blood Transfusion, The Seventh Affiliated Hospital of Sun Yat-Sen University, Shenzhen, 518000, China.
Zhang F; Department of Hematology, The Third Xiangya Hospital of Central South University, Changsha, 410000, China.
Liu J; Department of Hematology, The Third Xiangya Hospital of Central South University, Changsha, 410000, China. .
Fu Y; Department of Blood Transfusion, The Third Xiangya Hospital of Central South University, Changsha, 410000, China. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 11; Vol. 22 (1), pp. 238. Date of Electronic Publication: 2021 May 11.
Typ publikacji :
Journal Article
MeSH Terms :
Multiple Myeloma*/genetics
Biomarkers ; Computational Biology ; Humans ; RNA, Transfer/genetics
Czasopismo naukowe
Tytuł :
Censcyt: censored covariates in differential abundance analysis in cytometry.
Autorzy :
Gerber R; Department of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, Zurich, Switzerland.
Robinson MD; Department of Molecular Life Sciences, University of Zurich, Zurich, Switzerland. .; SIB Swiss Institute of Bioinformatics, Zurich, Switzerland. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 10; Vol. 22 (1), pp. 235. Date of Electronic Publication: 2021 May 10.
Typ publikacji :
Journal Article
MeSH Terms :
Proportional Hazards Models*
Computer Simulation
Czasopismo naukowe
Tytuł :
Simultaneous learning of individual microRNA-gene interactions and regulatory comodules.
Autorzy :
Roth M; Google North America, San Francisco, USA.
Jain P; Electrical Engineering, Indian Institute of Technology Bombay, Mumbai, India.
Koo J; NVIDIA North America, Santa Clara, USA.
Chaterji S; Agricultural and Biological Engineering, Purdue University, West Lafayette, IN, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 10; Vol. 22 (1), pp. 237. Date of Electronic Publication: 2021 May 10.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Regulatory Networks*
MicroRNAs*/genetics
Gene Expression Profiling ; Gene Expression Regulation ; Humans ; RNA, Messenger ; Sequence Analysis, RNA
Czasopismo naukowe
Tytuł :
DR2S: an integrated algorithm providing reference-grade haplotype sequences from heterozygous samples.
Autorzy :
Klasberg S; DKMS Life Science Lab, Dresden, Germany. .
Schmidt AH; DKMS Life Science Lab, Dresden, Germany.; DKMS, Tübingen, Germany.
Lange V; DKMS Life Science Lab, Dresden, Germany.
Schöfl G; DKMS Life Science Lab, Dresden, Germany.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 10; Vol. 22 (1), pp. 236. Date of Electronic Publication: 2021 May 10.
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Nucleic Acid*
High-Throughput Nucleotide Sequencing*
Algorithms ; Alleles ; Genotype ; HLA Antigens ; Haplotypes
Czasopismo naukowe
Tytuł :
MOCCA: a flexible suite for modelling DNA sequence motif occurrence combinatorics.
Autorzy :
Bredesen BA; Computational Biology Unit, Department of Informatics, University of Bergen, P.O. Box 7803, 5020, Bergen, Norway. .
Rehmsmeier M; Department of Biology, Humboldt-Universität zu Berlin, Unter den Linden 6, 10099, Berlin, Germany.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 07; Vol. 22 (1), pp. 234. Date of Electronic Publication: 2021 May 07.
Typ publikacji :
Journal Article
MeSH Terms :
Algorithms*
Support Vector Machine*
Base Sequence ; Nucleotide Motifs/genetics ; Position-Specific Scoring Matrices
Czasopismo naukowe
Tytuł :
Systematic interrogation of mutation groupings reveals divergent downstream expression programs within key cancer genes.
Autorzy :
Grzadkowski MR; Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR, USA. .
Holly HD; Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
Somers J; Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
Demir E; Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 06; Vol. 22 (1), pp. 233. Date of Electronic Publication: 2021 May 06.
Typ publikacji :
Journal Article
MeSH Terms :
Neoplasms*/genetics
Oncogenes*
Genomics ; Humans ; Mutation ; Transcriptome
Czasopismo naukowe
Tytuł :
DeepNetBim: deep learning model for predicting HLA-epitope interactions based on network analysis by harnessing binding and immunogenicity information.
Autorzy :
Yang X; Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Zhao L; Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Wei F; Sheng Yushou Center of Cell Biology and Immunology, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Li J; Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 05; Vol. 22 (1), pp. 231. Date of Electronic Publication: 2021 May 05.
Typ publikacji :
Journal Article
MeSH Terms :
Deep Learning*
Algorithms ; Epitopes ; HLA Antigens/genetics ; HLA Antigens/metabolism ; Histocompatibility Antigens Class I/metabolism ; Histocompatibility Antigens Class II ; Humans ; Protein Binding
Czasopismo naukowe
Tytuł :
A new method for exploring gene-gene and gene-environment interactions in GWAS with tree ensemble methods and SHAP values.
Autorzy :
Johnsen PV; SINTEF DIGITAL, Forskningsveien 1, 0373, Oslo, Norway. .; Department of Mathematical Sciences, Norwegian University of Science and Technology, A. Getz vei 1, 7491, Trondheim, Norway. .
Riemer-Sørensen S; SINTEF DIGITAL, Forskningsveien 1, 0373, Oslo, Norway.
DeWan AT; Department of Chronic Disease Epidemiology and Center for Perinatal, Pediatric and Environmental Epidemiology, Yale School of Public Health, 1 Church Street, New Haven, CT, 06510, USA.; Gemini Center for Sepsis Research, Department of Circulation and Medical Imaging, NTNU, Norwegian University of Science and Technology, Prinsesse Kristinas gate 3, 7030, Trondheim, Norway.
Cahill ME; Department of Chronic Disease Epidemiology and Center for Perinatal, Pediatric and Environmental Epidemiology, Yale School of Public Health, 1 Church Street, New Haven, CT, 06510, USA.
Langaas M; Department of Mathematical Sciences, Norwegian University of Science and Technology, A. Getz vei 1, 7491, Trondheim, Norway.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 04; Vol. 22 (1), pp. 230. Date of Electronic Publication: 2021 May 04.
Typ publikacji :
Journal Article
MeSH Terms :
Gene-Environment Interaction*
Genome-Wide Association Study*
Algorithms ; Polymorphism, Single Nucleotide ; Trees
Czasopismo naukowe
Tytuł :
Modern simulation utilities for genetic analysis.
Autorzy :
Ji SS; Department of Biostatistics, University of California, Los Angeles, 90095, USA.
German CA; Department of Biostatistics, University of California, Los Angeles, 90095, USA.
Lange K; Department of Computational Medicine, University of California, Los Angeles, 90095, USA.; Department of Human Genetics, University of California, Los Angeles, 90095, USA.
Sinsheimer JS; Department of Biostatistics, University of California, Los Angeles, 90095, USA.; Department of Computational Medicine, University of California, Los Angeles, 90095, USA.; Department of Human Genetics, University of California, Los Angeles, 90095, USA.
Zhou H; Department of Biostatistics, University of California, Los Angeles, 90095, USA.
Zhou J; Departments of Epidemiology and Biostatistics, University of Arizona, Tucson, 85721, USA.
Sobel EM; Department of Computational Medicine, University of California, Los Angeles, 90095, USA. .; Department of Human Genetics, University of California, Los Angeles, 90095, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 03; Vol. 22 (1), pp. 228. Date of Electronic Publication: 2021 May 03.
Typ publikacji :
Journal Article
MeSH Terms :
Cloud Computing*
Genetic Testing*
Aged ; Computer Simulation ; Humans ; Pedigree ; Phenotype
Czasopismo naukowe
Tytuł :
The Coronavirus Network Explorer: mining a large-scale knowledge graph for effects of SARS-CoV-2 on host cell function.
Autorzy :
Krämer A; Digital Insights, QIAGEN, Redwood City, USA. .
Billaud JN; Digital Insights, QIAGEN, Redwood City, USA.
Tugendreich S; Digital Insights, QIAGEN, Redwood City, USA.
Shiffman D; Digital Insights, QIAGEN, Redwood City, USA.
Jones M; Digital Insights, QIAGEN, Redwood City, USA.
Green J; Digital Insights, QIAGEN, Redwood City, USA.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 03; Vol. 22 (1), pp. 229. Date of Electronic Publication: 2021 May 03.
Typ publikacji :
Journal Article
MeSH Terms :
COVID-19*
SARS-CoV-2*
Humans ; Pattern Recognition, Automated ; Transcriptome
Czasopismo naukowe
Tytuł :
Tamock: simulation of habitat-specific benchmark data in metagenomics.
Autorzy :
Gerner SM; Division of Computational System Biology, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.; Department Bioengineering, University of Applied Sciences FH Campus Wien, Vienna, Austria.
Graf AB; Department Bioengineering, University of Applied Sciences FH Campus Wien, Vienna, Austria.
Rattei T; Division of Computational System Biology, Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 01; Vol. 22 (1), pp. 227. Date of Electronic Publication: 2021 May 01.
Typ publikacji :
Journal Article
MeSH Terms :
Benchmarking*
Metagenomics*
Algorithms ; Metagenome ; Sequence Analysis, DNA ; Software
Czasopismo naukowe
Tytuł :
Root Digger: a root placement program for phylogenetic trees.
Autorzy :
Bettisworth B; Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany. .
Stamatakis A; Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany.; Institut für Theoretische Informatik, Karlsruhe Institute of Technology, Karslruhe, Germany.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 01; Vol. 22 (1), pp. 225. Date of Electronic Publication: 2021 May 01.
Typ publikacji :
Journal Article
MeSH Terms :
Evolution, Molecular*
Software*
Models, Genetic ; Phylogeny ; Probability ; Uncertainty
Czasopismo naukowe
Tytuł :
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses.
Autorzy :
Eagles NJ; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.
Burke EE; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.
Leonard J; Winter Genomics, Salaverry 874 int 100, Lindavista, CDMX, 07300, Mexico.; QuestBridge Scholar, Palo Alto, CA, 94303, USA.
Barry BK; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.; Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA.
Stolz JM; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.
Huuki L; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.
Phan BN; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.; Medical Scientist Training Program, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15213, USA.
Serrato VL; Winter Genomics, Salaverry 874 int 100, Lindavista, CDMX, 07300, Mexico.; Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Mexico City, CDMX, 11340, Mexico.
Gutiérrez-Millán E; Winter Genomics, Salaverry 874 int 100, Lindavista, CDMX, 07300, Mexico.
Aguilar-Ordoñez I; Winter Genomics, Salaverry 874 int 100, Lindavista, CDMX, 07300, Mexico.; Department of Supercomputing, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, CDMX, 14610, Mexico.
Jaffe AE; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.; Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, MD, 21205, USA.; Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, 21205, USA.; Department of Genetic Medicine, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA.; Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, MD, 21205, USA.; Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, 21205, USA.
Collado-Torres L; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA. .; Center for Computational Biology, Johns Hopkins University, Baltimore, MD, 21205, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 01; Vol. 22 (1), pp. 224. Date of Electronic Publication: 2021 May 01.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Software*
RNA-Seq ; Sequence Analysis, RNA ; Workflow
Czasopismo naukowe
Tytuł :
JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit.
Autorzy :
David CC; The New Zealand Institute for Plant and Food Research, Ltd., Canterbury Agricultural Park, Lincoln, New Zealand. .
Avery CS; Department of Bioinformatics and Genomics, University of North Carolina Charlotte, 9201 University City Blvd, 28223, Charlotte, NC, USA.; Department of Physics and Optical Sciences, University of North Carolina Charlotte, 9201 University City Blvd, 28223, Charlotte, NC, USA.
Jacobs DJ; Department of Physics and Optical Sciences, University of North Carolina Charlotte, 9201 University City Blvd, 28223, Charlotte, NC, USA.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 May 01; Vol. 22 (1), pp. 226. Date of Electronic Publication: 2021 May 01.
Typ publikacji :
Journal Article
MeSH Terms :
Proteins*
Software*
Indonesia ; Molecular Dynamics Simulation ; Principal Component Analysis ; Protein Conformation
Czasopismo naukowe

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