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Tytuł :
Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species
Autorzy :
Stitt Mark
Baebler Špela
Usadel Björn
Rotter Ana
Gruden Kristina
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Temat :
Plant culture
SB1-1110
Biology (General)
QH301-705.5
Źródło :
Plant Methods, Vol 3, Iss 1, p 10 (2007)
Opis pliku :
electronic resource
Relacje :
http://www.plantmethods.com/content/3/1/10; https://doaj.org/toc/1746-4811
Dostęp URL :
https://doaj.org/article/533870a31a0a40928f72287a5da6db20
Czasopismo naukowe
Tytuł :
Insect pest management in the age of synthetic biology.
Autorzy :
Mateos Fernández R; Institute for Plant Molecular and Cell Biology (IBMCP), UPV-CSIC, Valencia, Spain.
Petek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Gerasymenko I; Plant Biotechnology and Metabolic Engineering, Technische Universität Darmstadt, Darmstadt, Germany.
Juteršek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; Jožef Stefan International Postgraduate School, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Kallam K; Earlham Institute, Norwich Research Park, Norfolk, UK.
Moreno Giménez E; Institute for Plant Molecular and Cell Biology (IBMCP), UPV-CSIC, Valencia, Spain.
Gondolf J; Institut für Philosophie, Technische Universität Darmstadt, Darmstadt, Germany.
Nordmann A; Institut für Philosophie, Technische Universität Darmstadt, Darmstadt, Germany.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Orzaez D; Institute for Plant Molecular and Cell Biology (IBMCP), UPV-CSIC, Valencia, Spain.
Patron NJ; Earlham Institute, Norwich Research Park, Norfolk, UK.
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Źródło :
Plant biotechnology journal [Plant Biotechnol J] 2021 Aug 20. Date of Electronic Publication: 2021 Aug 20.
Typ publikacji :
Journal Article; Review
Czasopismo naukowe
Tytuł :
Incorporating RNA-Seq transcriptomics into glycosylation-integrating metabolic network modelling kinetics: Multiomic Chinese hamster ovary (CHO) cell bioreactors.
Autorzy :
Bezjak L; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
Erklavec Zajec V; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Stare T; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Pohar A; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
Novak U; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
Likozar B; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
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Źródło :
Biotechnology and bioengineering [Biotechnol Bioeng] 2021 Apr; Vol. 118 (4), pp. 1476-1490. Date of Electronic Publication: 2021 Jan 21.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Czasopismo naukowe
Tytuł :
Multiple copies of the oxytetracycline gene cluster in selected Streptomyces rimosus strains can provide significantly increased titers.
Autorzy :
Pikl Š; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Carrillo Rincón AF; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Slemc L; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Goranovič D; Acies Bio, d.o.o, Tehnološki Park, Ljubljana, Slovenia.
Avbelj M; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Gjuračić K; Acies Bio, d.o.o, Tehnološki Park, Ljubljana, Slovenia.
Sucipto H; Pharmazeutische Biotechnologie, Universität des Saarlandes, Saarbrücken, Germany.; Helmholtz-Institut für Pharmazeutische Forschung Saarland, Saarbrücken, Germany.
Stare K; National Institute of Biology, Večna pot 111, Ljubljana, Slovenia.
Baebler Š; National Institute of Biology, Večna pot 111, Ljubljana, Slovenia.
Šala M; National Institute of Chemistry, Hajdrihova 19, SI-1000, Ljubljana, Slovenia.
Guo M; State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Luzhetskyy A; Pharmazeutische Biotechnologie, Universität des Saarlandes, Saarbrücken, Germany.; Helmholtz-Institut für Pharmazeutische Forschung Saarland, Saarbrücken, Germany.
Petković H; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia. .
Magdevska V; Acies Bio, d.o.o, Tehnološki Park, Ljubljana, Slovenia. .
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Źródło :
Microbial cell factories [Microb Cell Fact] 2021 Feb 17; Vol. 20 (1), pp. 47. Date of Electronic Publication: 2021 Feb 17.
Typ publikacji :
Journal Article
MeSH Terms :
Oxytetracycline/*biosynthesis
Streptomyces rimosus/*genetics
Multigene Family ; Streptomyces rimosus/metabolism
Czasopismo naukowe
Tytuł :
Potentially Toxic Planktic and Benthic Cyanobacteria in Slovenian Freshwater Bodies: Detection by Quantitative PCR.
Autorzy :
Zupančič M; Department of Genetic Toxicology and Cancer Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.; Jozef Stefan International Postgraduate School, 1000 Ljubljana, Slovenia.
Kogovšek P; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
Šter T; Slovenian Environment Agency, 1000 Ljubljana, Slovenia.
Remec Rekar Š; Slovenian Environment Agency, 1000 Ljubljana, Slovenia.
Cerasino L; Department of Sustainable Agro-Ecosystems and Bioresources, Research and Innovation Centre, Fondazione Edmund Mach, 38010 San Michele all'Adige, Italy.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
Krivograd Klemenčič A; Slovenian Environment Agency, 1000 Ljubljana, Slovenia.
Eleršek T; Department of Genetic Toxicology and Cancer Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
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Źródło :
Toxins [Toxins (Basel)] 2021 Feb 11; Vol. 13 (2). Date of Electronic Publication: 2021 Feb 11.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Environmental Monitoring*
Polymerase Chain Reaction*
Water Microbiology*
Bacterial Toxins/*genetics
Fresh Water/*microbiology
Marine Toxins/*genetics
Microcystis/*genetics
Planktothrix/*genetics
Alkaloids/genetics ; Biofilms/growth & development ; Gene Expression Regulation, Bacterial ; Harmful Algal Bloom ; Microcystins/genetics ; Microcystis/growth & development ; Microcystis/isolation & purification ; Planktothrix/growth & development ; Planktothrix/isolation & purification ; Saxitoxin/genetics ; Slovenia
Czasopismo naukowe
Tytuł :
RNA Sequencing Analyses for Deciphering Potato Molecular Responses.
Autorzy :
Ramšak Ž; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia. .
Petek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2354, pp. 57-94.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Czasopismo naukowe
Tytuł :
Deregulation of whole-transcriptome gene expression in zebrafish (Danio rerio) after chronic exposure to low doses of imatinib mesylate in a complete life cycle study.
Autorzy :
Novak M; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia. Electronic address: .
Baebler Š; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia.
Žegura B; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia.
Rotter A; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia.
Gajski G; Institute for Medical Research and Occupational Health, Mutagenesis Unit, Ksaverska Cesta 2, 10000, Zagreb, Croatia.
Gerić M; Institute for Medical Research and Occupational Health, Mutagenesis Unit, Ksaverska Cesta 2, 10000, Zagreb, Croatia.
Garaj-Vrhovac V; Institute for Medical Research and Occupational Health, Mutagenesis Unit, Ksaverska Cesta 2, 10000, Zagreb, Croatia.
Bakos K; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Csenki Z; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Kovács R; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Horváth Á; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Gazsi G; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Filipič M; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia.
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Źródło :
Chemosphere [Chemosphere] 2021 Jan; Vol. 263, pp. 128097. Date of Electronic Publication: 2020 Sep 09.
Typ publikacji :
Journal Article
MeSH Terms :
Water Pollutants, Chemical*/toxicity
Zebrafish*/genetics
Animals ; Female ; Imatinib Mesylate/toxicity ; Life Cycle Stages ; Male ; Transcriptome
Czasopismo naukowe
Tytuł :
The need for standardisation in life science research - an approach to excellence and trust.
Autorzy :
Hollmann S; Faculty of Science, University of Potsdam, Potsdam, Brandenburg, 14476, Germany.; SB Science Management UG (Haftungsbeschränkt), Berlin, Berlin, 12163, Germany.
Kremer A; Information Technology for Translational Medicine S.A. ITTM S.A., Esch-sur-Alzette, Esch, 4354, Luxembourg.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, Slovenia.
Trefois C; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, 4367, Luxembourg.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, Slovenia.
Rudnicki WR; Institute of Computer Science, University of Białystok, Białystok, 15-328, Poland.
Tong W; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, Jefferson, USA.
Gruca A; Department of Computer Networks and Systems, Silesian University of Technology, Gliwice, 44-100, Poland.
Bongcam-Rudloff E; Department of Animal Breeding and Genetics, Bioinformatics section, University of Agricultural Sciences, Uppsala, 750 07, Sweden.
Evelo CT; Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, 6229 ER, The Netherlands.; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, 6229 ER, The Netherlands.
Nechyporenko A; Department of Systems Engineering, Kharkiv National University of Radio Electronics, Kharkiv Oblast, 61000, Ukraine.
Frohme M; Division Molecular Biotechnology and Functional Genomics, Technical University of Applied Sciences Wildau, Wildau, Brandenburg, 15745, Germany.
Šafránek D; Masaryk University, Brno, 601 77, Czech Republic.
Regierer B; SB Science Management UG (Haftungsbeschränkt), Berlin, Berlin, 12163, Germany.; Leibniz Institute of Vegetable and Ornamental Crops (IGZ), Großbeeren, Brandenburg, 14979, Germany.
D'Elia D; Institute for Biomedical Technologies, National Research Council, Italy, Bari, 70126, Italy.
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Źródło :
F1000Research [F1000Res] 2020 Dec 04; Vol. 9, pp. 1398. Date of Electronic Publication: 2020 Dec 04 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biological Science Disciplines*
Trust*
International Cooperation ; Metadata ; Quality of Life
Czasopismo naukowe
Tytuł :
Precision transcriptomics of viral foci reveals the spatial regulation of immune-signaling genes and identifies RBOHD as an important player in the incompatible interaction between potato virus Y and potato.
Autorzy :
Lukan T; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Pompe-Novak M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Baebler Š; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Tušek-Žnidarič M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Kladnik A; Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, Ljubljana, 1000, Slovenia.
Križnik M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Blejec A; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Zagorščak M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Stare K; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Dušak B; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Coll A; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Pollmann S; Centre for Plant Biotechnology and Genomics, Campus de Montegancedo Crta M-40, Km 38, Pozuelo de Alarcón, Madrid, 28223, UPM-INIA Spain.
Morgiewicz K; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, Warsaw, 02-106, Poland.
Hennig J; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, Warsaw, 02-106, Poland.
Gruden K; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
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Źródło :
The Plant journal : for cell and molecular biology [Plant J] 2020 Nov; Vol. 104 (3), pp. 645-661. Date of Electronic Publication: 2020 Sep 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Potyvirus/*genetics
Solanum tuberosum/*metabolism
Solanum tuberosum/*virology
Gene Expression Regulation, Plant/genetics ; Plant Diseases/genetics ; Plant Diseases/virology ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Potyvirus/pathogenicity ; Reactive Oxygen Species/metabolism ; Salicylic Acid/metabolism
Czasopismo naukowe
Tytuł :
Roles of small RNAs in the establishment of tolerant interaction between plants and viruses.
Autorzy :
Križnik M; National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Baebler Š; National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Gruden K; National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia. Electronic address: .
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Źródło :
Current opinion in virology [Curr Opin Virol] 2020 Jun; Vol. 42, pp. 25-31. Date of Electronic Publication: 2020 May 29.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Crops, Agricultural/*virology
Plant Viruses/*physiology
RNA, Plant/*immunology
Crops, Agricultural/immunology ; Crops, Agricultural/physiology ; Plant Viruses/genetics ; RNA, Plant/genetics ; Symbiosis
Czasopismo naukowe
Tytuł :
Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea.
Autorzy :
Karničar K; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.
Drobnak I; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.; Department of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, SI-1000, Ljubljana, Slovenia.
Petek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia.
Magdevska V; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.
Horvat J; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.
Vidmar R; Department of Biochemistry, Molecular and Structural Biology, Jožef Stefan Institute, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.; International Postgraduate School Jožef Stefan, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia.
Rotter A; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia.
Jamnik P; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000, Ljubljana, Slovenia.
Fujs Š; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.
Turk B; Department of Biochemistry, Molecular and Structural Biology, Jožef Stefan Institute, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.; Faculty of Chemistry and Chemical Technology, University of Ljubljana, Aškerčeva cesta 5, SI-1000, Ljubljana, Slovenia.; Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.
Fonovič M; Department of Biochemistry, Molecular and Structural Biology, Jožef Stefan Institute, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.; Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia.
Kosec G; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia. .
Petković H; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia. .; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000, Ljubljana, Slovenia. .
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Źródło :
Microbial cell factories [Microb Cell Fact] 2016 Jun 03; Vol. 15, pp. 93. Date of Electronic Publication: 2016 Jun 03.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Anti-Bacterial Agents/*biosynthesis
Erythromycin/*biosynthesis
Saccharopolyspora/*metabolism
Anti-Bacterial Agents/chemistry ; Bacterial Proteins/metabolism ; Chromatography, High Pressure Liquid ; Electrophoresis, Polyacrylamide Gel ; Erythromycin/chemistry ; Gene Expression Profiling ; Genes, Bacterial ; Genomics ; Mass Spectrometry ; Metabolic Engineering ; Proteomics
Czasopismo naukowe
Tytuł :
Roles of the crotonyl-CoA carboxylase/reductase homologues in acetate assimilation and biosynthesis of immunosuppressant FK506 in Streptomyces tsukubaensis.
Autorzy :
Blažič M; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000, Ljubljana, Slovenia. .; Acies Bio, d.o.o., Tehnološki park 21, 1000, Ljubljana, Slovenia. .
Kosec G; Acies Bio, d.o.o., Tehnološki park 21, 1000, Ljubljana, Slovenia. .
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia. spela.baebler@nib.si.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia. .
Petković H; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000, Ljubljana, Slovenia. .; Acies Bio, d.o.o., Tehnološki park 21, 1000, Ljubljana, Slovenia. .
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Źródło :
Microbial cell factories [Microb Cell Fact] 2015 Oct 14; Vol. 14, pp. 164. Date of Electronic Publication: 2015 Oct 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Acyl-CoA Dehydrogenases/*genetics
Bacterial Proteins/*genetics
Immunosuppressive Agents/*metabolism
Streptomyces/*metabolism
Tacrolimus/*metabolism
Acetates/metabolism ; Acyl Coenzyme A/genetics ; Acyl Coenzyme A/metabolism ; Acyl-CoA Dehydrogenases/metabolism ; Bacterial Proteins/metabolism ; Immunosuppressive Agents/chemistry ; Multigene Family ; Promoter Regions, Genetic ; Real-Time Polymerase Chain Reaction ; Streptomyces/chemistry ; Streptomyces/genetics ; Tacrolimus/chemistry ; Transcriptome
Czasopismo naukowe
Tytuł :
GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology.
Autorzy :
Ramsak Ž; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia, Department of Knowledge Technologies, JoŽef Stefan Institute, 1000 Ljubljana, Slovenia, Department of Biology, Institute for Biology I, RWTH Aachen University, D-52056 Aachen, Germany and IBG-2: Plant Sciences, Institute for Bio- and Geosciences, Forschungszentrum Jülich, 52425 Jülich, Germany.
Baebler Š
Rotter A
Korbar M
Mozetic I
Usadel B
Gruden K
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2014 Jan; Vol. 42 (Database issue), pp. D1167-75. Date of Electronic Publication: 2013 Nov 04.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Genetic*
Gene Ontology*
Genes, Plant*
Molecular Sequence Annotation*
Computer Graphics ; Internet ; Plant Proteins/genetics ; Systems Integration
Czasopismo naukowe
Tytuł :
SACE_5599, a putative regulatory protein, is involved in morphological differentiation and erythromycin production in Saccharopolyspora erythraea.
Autorzy :
Kirm B
Magdevska V
Tome M
Horvat M
Karničar K
Petek M
Vidmar R
Baebler S
Jamnik P
Fujs Š
Horvat J
Fonovič M
Turk B
Gruden K
Petković H; Acies Bio, d,o,o, Tehnološki park 21, SI-1000, Ljubljana, Slovenia. .
Kosec G
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Źródło :
Microbial cell factories [Microb Cell Fact] 2013 Dec 17; Vol. 12, pp. 126. Date of Electronic Publication: 2013 Dec 17.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Bacterial Proteins/*metabolism
Erythromycin/*metabolism
Saccharopolyspora/*metabolism
Bacterial Proteins/genetics ; Erythromycin/biosynthesis ; Genetic Engineering ; Saccharopolyspora/genetics ; Saccharopolyspora/growth & development
Czasopismo naukowe
Tytuł :
β-1,3-glucanase class III promotes spread of PVY and improves in planta protein production.
Autorzy :
Dobnik D; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Baebler S
Kogovšek P
Pompe-Novak M
Stebih D
Panter G
Janež N
Morisset D
Zel J
Gruden K
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Źródło :
Plant biotechnology reports [Plant Biotechnol Rep] 2013; Vol. 7, pp. 547-555. Date of Electronic Publication: 2013 Aug 27.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
Gene expression data analysis using closed item set mining for labeled data.
Autorzy :
Rotter A; National Institute of Biology, Department of Biotechnology and Systems Biology, Ljubljana, Slovenia. />Novak PK
Baebler S
Toplak N
Blejec A
Lavrac N
Gruden K
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Źródło :
Omics : a journal of integrative biology [OMICS] 2010 Apr; Vol. 14 (2), pp. 177-86.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Algorithms*
Oligonucleotide Array Sequence Analysis/*methods
Computational Biology/methods ; Models, Statistical
Czasopismo naukowe
Tytuł :
Finding differentially expressed genes in two-channel DNA microarray datasets: how to increase reliability of data preprocessing.
Autorzy :
Rotter A; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia. />Hren M
Baebler S
Blejec A
Gruden K
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Źródło :
Omics : a journal of integrative biology [OMICS] 2008 Sep; Vol. 12 (3), pp. 171-82.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Genetic*
Gene Expression Profiling/*methods
Oligonucleotide Array Sequence Analysis/*methods
Algorithms ; Animals ; Gene Expression ; Mice ; Reproducibility of Results ; Solanum tuberosum/genetics ; Vitis/genetics
Czasopismo naukowe
Tytuł :
Jasmonic acid stimulates taxane production in cell suspension culture of yew (Taxus x media).
Autorzy :
Baebler S; Department of Plant Physiology and Biotechnology, National Institute of Biology, Ljubljana, Slovenia.
Camloh M
Kovac M
Ravnikar M
Zel J
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Źródło :
Planta medica [Planta Med] 2002 May; Vol. 68 (5), pp. 475-6.
Typ publikacji :
Letter; Research Support, Non-U.S. Gov't
MeSH Terms :
Taxoids*
Adenine/*analogs & derivatives
Bridged-Ring Compounds/*metabolism
Cyclopentanes/*pharmacology
Taxus/*drug effects
2,4-Dichlorophenoxyacetic Acid/pharmacology ; Adenine/pharmacology ; Cells, Cultured ; Culture Techniques ; Kinetin ; Oxylipins ; Seeds/metabolism ; Taxus/cytology ; Taxus/metabolism
Raport

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