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Tytuł :
Insect pest management in the age of synthetic biology.
Autorzy :
Mateos Fernández R; Institute for Plant Molecular and Cell Biology (IBMCP), UPV-CSIC, Valencia, Spain.
Petek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Gerasymenko I; Plant Biotechnology and Metabolic Engineering, Technische Universität Darmstadt, Darmstadt, Germany.
Juteršek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; Jožef Stefan International Postgraduate School, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Kallam K; Earlham Institute, Norwich Research Park, Norfolk, UK.
Moreno Giménez E; Institute for Plant Molecular and Cell Biology (IBMCP), UPV-CSIC, Valencia, Spain.
Gondolf J; Institut für Philosophie, Technische Universität Darmstadt, Darmstadt, Germany.
Nordmann A; Institut für Philosophie, Technische Universität Darmstadt, Darmstadt, Germany.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Orzaez D; Institute for Plant Molecular and Cell Biology (IBMCP), UPV-CSIC, Valencia, Spain.
Patron NJ; Earlham Institute, Norwich Research Park, Norfolk, UK.
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Źródło :
Plant biotechnology journal [Plant Biotechnol J] 2021 Aug 20. Date of Electronic Publication: 2021 Aug 20.
Typ publikacji :
Journal Article; Review
Czasopismo naukowe
Tytuł :
Incorporating RNA-Seq transcriptomics into glycosylation-integrating metabolic network modelling kinetics: Multiomic Chinese hamster ovary (CHO) cell bioreactors.
Autorzy :
Bezjak L; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
Erklavec Zajec V; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Stare T; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Pohar A; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
Novak U; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
Likozar B; Department of Catalysis and Chemical Reaction Engineering, National Institute of Chemistry, Ljubljana, Slovenia.
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Źródło :
Biotechnology and bioengineering [Biotechnol Bioeng] 2021 Apr; Vol. 118 (4), pp. 1476-1490. Date of Electronic Publication: 2021 Jan 21.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Czasopismo naukowe
Tytuł :
Multiple copies of the oxytetracycline gene cluster in selected Streptomyces rimosus strains can provide significantly increased titers.
Autorzy :
Pikl Š; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Carrillo Rincón AF; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Slemc L; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Goranovič D; Acies Bio, d.o.o, Tehnološki Park, Ljubljana, Slovenia.
Avbelj M; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Gjuračić K; Acies Bio, d.o.o, Tehnološki Park, Ljubljana, Slovenia.
Sucipto H; Pharmazeutische Biotechnologie, Universität des Saarlandes, Saarbrücken, Germany.; Helmholtz-Institut für Pharmazeutische Forschung Saarland, Saarbrücken, Germany.
Stare K; National Institute of Biology, Večna pot 111, Ljubljana, Slovenia.
Baebler Š; National Institute of Biology, Večna pot 111, Ljubljana, Slovenia.
Šala M; National Institute of Chemistry, Hajdrihova 19, SI-1000, Ljubljana, Slovenia.
Guo M; State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Luzhetskyy A; Pharmazeutische Biotechnologie, Universität des Saarlandes, Saarbrücken, Germany.; Helmholtz-Institut für Pharmazeutische Forschung Saarland, Saarbrücken, Germany.
Petković H; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia. .
Magdevska V; Acies Bio, d.o.o, Tehnološki Park, Ljubljana, Slovenia. .
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Źródło :
Microbial cell factories [Microb Cell Fact] 2021 Feb 17; Vol. 20 (1), pp. 47. Date of Electronic Publication: 2021 Feb 17.
Typ publikacji :
Journal Article
MeSH Terms :
Oxytetracycline/*biosynthesis
Streptomyces rimosus/*genetics
Multigene Family ; Streptomyces rimosus/metabolism
Czasopismo naukowe
Tytuł :
Potentially Toxic Planktic and Benthic Cyanobacteria in Slovenian Freshwater Bodies: Detection by Quantitative PCR.
Autorzy :
Zupančič M; Department of Genetic Toxicology and Cancer Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.; Jozef Stefan International Postgraduate School, 1000 Ljubljana, Slovenia.
Kogovšek P; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
Šter T; Slovenian Environment Agency, 1000 Ljubljana, Slovenia.
Remec Rekar Š; Slovenian Environment Agency, 1000 Ljubljana, Slovenia.
Cerasino L; Department of Sustainable Agro-Ecosystems and Bioresources, Research and Innovation Centre, Fondazione Edmund Mach, 38010 San Michele all'Adige, Italy.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
Krivograd Klemenčič A; Slovenian Environment Agency, 1000 Ljubljana, Slovenia.
Eleršek T; Department of Genetic Toxicology and Cancer Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.
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Źródło :
Toxins [Toxins (Basel)] 2021 Feb 11; Vol. 13 (2). Date of Electronic Publication: 2021 Feb 11.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Environmental Monitoring*
Polymerase Chain Reaction*
Water Microbiology*
Bacterial Toxins/*genetics
Fresh Water/*microbiology
Marine Toxins/*genetics
Microcystis/*genetics
Planktothrix/*genetics
Alkaloids/genetics ; Biofilms/growth & development ; Gene Expression Regulation, Bacterial ; Harmful Algal Bloom ; Microcystins/genetics ; Microcystis/growth & development ; Microcystis/isolation & purification ; Planktothrix/growth & development ; Planktothrix/isolation & purification ; Saxitoxin/genetics ; Slovenia
Czasopismo naukowe
Tytuł :
RNA Sequencing Analyses for Deciphering Potato Molecular Responses.
Autorzy :
Ramšak Ž; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia. .
Petek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2354, pp. 57-94.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Czasopismo naukowe
Tytuł :
Deregulation of whole-transcriptome gene expression in zebrafish (Danio rerio) after chronic exposure to low doses of imatinib mesylate in a complete life cycle study.
Autorzy :
Novak M; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia. Electronic address: .
Baebler Š; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia.
Žegura B; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia.
Rotter A; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia.
Gajski G; Institute for Medical Research and Occupational Health, Mutagenesis Unit, Ksaverska Cesta 2, 10000, Zagreb, Croatia.
Gerić M; Institute for Medical Research and Occupational Health, Mutagenesis Unit, Ksaverska Cesta 2, 10000, Zagreb, Croatia.
Garaj-Vrhovac V; Institute for Medical Research and Occupational Health, Mutagenesis Unit, Ksaverska Cesta 2, 10000, Zagreb, Croatia.
Bakos K; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Csenki Z; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Kovács R; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Horváth Á; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Gazsi G; Department of Aquaculture, Institute for Conservation of Natural Resources, Faculty of Agricultural and Environmental Sciences, Szent István University, 1. Pater Károly U, H-2100, Gödöllo, Hungary.
Filipič M; National Institute of Biology, Večna Pot 111, 1000, Ljubljana, Slovenia.
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Źródło :
Chemosphere [Chemosphere] 2021 Jan; Vol. 263, pp. 128097. Date of Electronic Publication: 2020 Sep 09.
Typ publikacji :
Journal Article
MeSH Terms :
Water Pollutants, Chemical*/toxicity
Zebrafish*/genetics
Animals ; Female ; Imatinib Mesylate/toxicity ; Life Cycle Stages ; Male ; Transcriptome
Czasopismo naukowe
Tytuł :
The need for standardisation in life science research - an approach to excellence and trust.
Autorzy :
Hollmann S; Faculty of Science, University of Potsdam, Potsdam, Brandenburg, 14476, Germany.; SB Science Management UG (Haftungsbeschränkt), Berlin, Berlin, 12163, Germany.
Kremer A; Information Technology for Translational Medicine S.A. ITTM S.A., Esch-sur-Alzette, Esch, 4354, Luxembourg.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, Slovenia.
Trefois C; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, 4367, Luxembourg.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, Slovenia.
Rudnicki WR; Institute of Computer Science, University of Białystok, Białystok, 15-328, Poland.
Tong W; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, Jefferson, USA.
Gruca A; Department of Computer Networks and Systems, Silesian University of Technology, Gliwice, 44-100, Poland.
Bongcam-Rudloff E; Department of Animal Breeding and Genetics, Bioinformatics section, University of Agricultural Sciences, Uppsala, 750 07, Sweden.
Evelo CT; Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, 6229 ER, The Netherlands.; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, 6229 ER, The Netherlands.
Nechyporenko A; Department of Systems Engineering, Kharkiv National University of Radio Electronics, Kharkiv Oblast, 61000, Ukraine.
Frohme M; Division Molecular Biotechnology and Functional Genomics, Technical University of Applied Sciences Wildau, Wildau, Brandenburg, 15745, Germany.
Šafránek D; Masaryk University, Brno, 601 77, Czech Republic.
Regierer B; SB Science Management UG (Haftungsbeschränkt), Berlin, Berlin, 12163, Germany.; Leibniz Institute of Vegetable and Ornamental Crops (IGZ), Großbeeren, Brandenburg, 14979, Germany.
D'Elia D; Institute for Biomedical Technologies, National Research Council, Italy, Bari, 70126, Italy.
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Źródło :
F1000Research [F1000Res] 2020 Dec 04; Vol. 9, pp. 1398. Date of Electronic Publication: 2020 Dec 04 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biological Science Disciplines*
Trust*
International Cooperation ; Metadata ; Quality of Life
Czasopismo naukowe
Tytuł :
Precision transcriptomics of viral foci reveals the spatial regulation of immune-signaling genes and identifies RBOHD as an important player in the incompatible interaction between potato virus Y and potato.
Autorzy :
Lukan T; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Pompe-Novak M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Baebler Š; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Tušek-Žnidarič M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Kladnik A; Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, Ljubljana, 1000, Slovenia.
Križnik M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Blejec A; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Zagorščak M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Stare K; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Dušak B; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Coll A; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Pollmann S; Centre for Plant Biotechnology and Genomics, Campus de Montegancedo Crta M-40, Km 38, Pozuelo de Alarcón, Madrid, 28223, UPM-INIA Spain.
Morgiewicz K; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, Warsaw, 02-106, Poland.
Hennig J; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, Warsaw, 02-106, Poland.
Gruden K; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
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Źródło :
The Plant journal : for cell and molecular biology [Plant J] 2020 Nov; Vol. 104 (3), pp. 645-661. Date of Electronic Publication: 2020 Sep 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Potyvirus/*genetics
Solanum tuberosum/*metabolism
Solanum tuberosum/*virology
Gene Expression Regulation, Plant/genetics ; Plant Diseases/genetics ; Plant Diseases/virology ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Potyvirus/pathogenicity ; Reactive Oxygen Species/metabolism ; Salicylic Acid/metabolism
Czasopismo naukowe
Tytuł :
Roles of small RNAs in the establishment of tolerant interaction between plants and viruses.
Autorzy :
Križnik M; National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Baebler Š; National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Gruden K; National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia. Electronic address: .
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Źródło :
Current opinion in virology [Curr Opin Virol] 2020 Jun; Vol. 42, pp. 25-31. Date of Electronic Publication: 2020 May 29.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Crops, Agricultural/*virology
Plant Viruses/*physiology
RNA, Plant/*immunology
Crops, Agricultural/immunology ; Crops, Agricultural/physiology ; Plant Viruses/genetics ; RNA, Plant/genetics ; Symbiosis
Czasopismo naukowe
Tytuł :
Three-dimensional visualization of aneurysm wall calcification by cerebral angiography: Technical case report.
Autorzy :
Andereggen L; Department of Neurosurgery, Kantonsspital Aarau, Aarau, Switzerland. Electronic address: .
Baebler S; Department of Neurosurgery, Kantonsspital Aarau, Aarau, Switzerland.
Anon J; Department of Neuroradiology, Kantonsspital Aarau, Aarau, Switzerland.
Remonda L; Department of Neuroradiology, Kantonsspital Aarau, Aarau, Switzerland.
Fandino J; Department of Neurosurgery, Kantonsspital Aarau, Aarau, Switzerland.
Marbacher S; Department of Neurosurgery, Kantonsspital Aarau, Aarau, Switzerland.
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Źródło :
Journal of clinical neuroscience : official journal of the Neurosurgical Society of Australasia [J Clin Neurosci] 2020 Mar; Vol. 73, pp. 290-293. Date of Electronic Publication: 2020 Feb 15.
Typ publikacji :
Case Reports; Journal Article
MeSH Terms :
Cerebral Angiography/*methods
Imaging, Three-Dimensional/*methods
Intracranial Aneurysm/*diagnostic imaging
Vascular Calcification/*diagnostic imaging
Humans ; Intracranial Aneurysm/complications ; Male ; Middle Aged ; Vascular Calcification/complications
Czasopismo naukowe
Tytuł :
Plant Molecular Responses to Potato Virus Y: A Continuum of Outcomes from Sensitivity and Tolerance to Resistance.
Autorzy :
Baebler Š; National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Coll A; National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Gruden K; National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
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Źródło :
Viruses [Viruses] 2020 Feb 15; Vol. 12 (2). Date of Electronic Publication: 2020 Feb 15.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Plant Immunity*
Plant Diseases/*virology
Potyvirus/*pathogenicity
Solanum tuberosum/*genetics
Solanum tuberosum/*virology
Genotype ; Plant Diseases/immunology ; Plant Growth Regulators/immunology ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Signal Transduction ; Solanum tuberosum/immunology
Czasopismo naukowe
Tytuł :
Network Modeling Unravels Mechanisms of Crosstalk between Ethylene and Salicylate Signaling in Potato.
Autorzy :
Ramšak Ž; National Institute of Biology, Department of Biotechnology and Systems Biology, 1000 Ljubljana, Slovenia .
Coll A; National Institute of Biology, Department of Biotechnology and Systems Biology, 1000 Ljubljana, Slovenia.
Stare T; National Institute of Biology, Department of Biotechnology and Systems Biology, 1000 Ljubljana, Slovenia.
Tzfadia O; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium.; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.
Baebler Š; National Institute of Biology, Department of Biotechnology and Systems Biology, 1000 Ljubljana, Slovenia.
Van de Peer Y; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium.; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.; Genomics Research Institute, University of Pretoria, Pretoria 0028, South Africa.
Gruden K; National Institute of Biology, Department of Biotechnology and Systems Biology, 1000 Ljubljana, Slovenia.
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Źródło :
Plant physiology [Plant Physiol] 2018 Sep; Vol. 178 (1), pp. 488-499. Date of Electronic Publication: 2018 Jun 22.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Regulatory Networks*
Models, Genetic*
Ethylenes/*metabolism
Salicylic Acid/*metabolism
Signal Transduction/*genetics
Solanum tuberosum/*genetics
Arabidopsis/genetics ; Arabidopsis/metabolism ; Crops, Agricultural/genetics ; Crops, Agricultural/metabolism ; Gene Expression Profiling/methods ; Gene Expression Regulation, Plant ; Plant Breeding/methods ; Plant Immunity/genetics ; Solanum tuberosum/metabolism
Czasopismo naukowe
Tytuł :
Cell Death Is Not Sufficient for the Restriction of Potato Virus Y Spread in Hypersensitive Response-Conferred Resistance in Potato.
Autorzy :
Lukan T; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; Jožef Stefan International Postgraduate School, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Pompe-Novak M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Guček K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Zagorščak M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Coll A; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
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Źródło :
Frontiers in plant science [Front Plant Sci] 2018 Feb 15; Vol. 9, pp. 168. Date of Electronic Publication: 2018 Feb 15 (Print Publication: 2018).
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
Plant X-tender: An extension of the AssemblX system for the assembly and expression of multigene constructs in plants.
Autorzy :
Lukan T; National Institute of Biology, Department of Biotechnology and Systems Biology, Ljubljana, Slovenia.; International Postgraduate School, Ljubljana, Slovenia.
Machens F; University of Potsdam, Cell2Fab Research Unit, Potsdam, Germany.
Coll A; National Institute of Biology, Department of Biotechnology and Systems Biology, Ljubljana, Slovenia.
Baebler Š; National Institute of Biology, Department of Biotechnology and Systems Biology, Ljubljana, Slovenia.
Messerschmidt K; University of Potsdam, Cell2Fab Research Unit, Potsdam, Germany.
Gruden K; National Institute of Biology, Department of Biotechnology and Systems Biology, Ljubljana, Slovenia.
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Źródło :
PloS one [PLoS One] 2018 Jan 04; Vol. 13 (1), pp. e0190526. Date of Electronic Publication: 2018 Jan 04 (Print Publication: 2018).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Validation Study
MeSH Terms :
Genes, Plant*
Multigene Family*
Plants/*genetics
Genetic Vectors ; Polymerase Chain Reaction ; Saccharomyces cerevisiae/genetics
Czasopismo naukowe
Tytuł :
Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection.
Autorzy :
Križnik M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; JoŽef Stefan International Postgraduate School, Ljubljana, Slovenia.
Petek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Dobnik D; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Ramšak Ž; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Pollmann S; Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid UPM - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Madrid, Spain.
Kreuze JF; Global Program of Integrated Crop and Systems Research, International Potato Center (CIP), Lima, Peru.
Žel J; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
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Źródło :
Frontiers in plant science [Front Plant Sci] 2017 Dec 22; Vol. 8, pp. 2192. Date of Electronic Publication: 2017 Dec 22 (Print Publication: 2017).
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
quantGenius: implementation of a decision support system for qPCR-based gene quantification.
Autorzy :
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, SI, Slovenia. spela.baebler@nib.si.
Svalina M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, SI, Slovenia.
Petek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, SI, Slovenia.
Stare K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, SI, Slovenia.
Rotter A; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, SI, Slovenia.
Pompe-Novak M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, SI, Slovenia.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, 1000, SI, Slovenia.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2017 May 25; Vol. 18 (1), pp. 276. Date of Electronic Publication: 2017 May 25.
Typ publikacji :
Journal Article
MeSH Terms :
User-Computer Interface*
Real-Time Polymerase Chain Reaction/*methods
Internet ; Limit of Detection ; Nucleic Acids/analysis ; Nucleic Acids/metabolism ; Nucleic Acids/standards ; Quality Control ; Real-Time Polymerase Chain Reaction/standards
Czasopismo naukowe
Tytuł :
Influence of selected anti-cancer drugs on the induction of DNA double-strand breaks and changes in gene expression in human hepatoma HepG2 cells.
Autorzy :
Novak M; Department of Genetic Toxicology and Cancer Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia.; Ecological Engineering Institute, Maribor, Slovenia.; Jozef Stefan International Postgraduate School, Ljubljana, Slovenia.
Žegura B; Department of Genetic Toxicology and Cancer Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and System Biology, National Institute of Biology, Ljubljana, Slovenia.
Štern A; Department of Genetic Toxicology and Cancer Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia.
Rotter A; Department of Genetic Toxicology and Cancer Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia.
Stare K; Department of Biotechnology and System Biology, National Institute of Biology, Ljubljana, Slovenia.
Filipič M; Department of Genetic Toxicology and Cancer Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia. .
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Źródło :
Environmental science and pollution research international [Environ Sci Pollut Res Int] 2016 Aug; Vol. 23 (15), pp. 14751-61. Date of Electronic Publication: 2015 Sep 22.
Typ publikacji :
Journal Article
MeSH Terms :
Antineoplastic Agents/*toxicity
DNA Breaks, Double-Stranded/*drug effects
Gene Expression Regulation, Neoplastic/*drug effects
Hep G2 Cells ; Humans ; Mutagenicity Tests
Czasopismo naukowe
Tytuł :
Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea.
Autorzy :
Karničar K; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.
Drobnak I; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.; Department of Synthetic Biology and Immunology, National Institute of Chemistry, Hajdrihova 19, SI-1000, Ljubljana, Slovenia.
Petek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia.
Magdevska V; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.
Horvat J; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.
Vidmar R; Department of Biochemistry, Molecular and Structural Biology, Jožef Stefan Institute, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.; International Postgraduate School Jožef Stefan, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia.
Rotter A; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia.
Jamnik P; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000, Ljubljana, Slovenia.
Fujs Š; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia.
Turk B; Department of Biochemistry, Molecular and Structural Biology, Jožef Stefan Institute, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.; Faculty of Chemistry and Chemical Technology, University of Ljubljana, Aškerčeva cesta 5, SI-1000, Ljubljana, Slovenia.; Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.
Fonovič M; Department of Biochemistry, Molecular and Structural Biology, Jožef Stefan Institute, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.; Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, Jamova cesta 39, SI-1000, Ljubljana, Slovenia.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia.
Kosec G; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia. .
Petković H; Acies Bio, d.o.o., Tehnološki park 21, SI-1000, Ljubljana, Slovenia. .; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000, Ljubljana, Slovenia. .
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Źródło :
Microbial cell factories [Microb Cell Fact] 2016 Jun 03; Vol. 15, pp. 93. Date of Electronic Publication: 2016 Jun 03.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Anti-Bacterial Agents/*biosynthesis
Erythromycin/*biosynthesis
Saccharopolyspora/*metabolism
Anti-Bacterial Agents/chemistry ; Bacterial Proteins/metabolism ; Chromatography, High Pressure Liquid ; Electrophoresis, Polyacrylamide Gel ; Erythromycin/chemistry ; Gene Expression Profiling ; Genes, Bacterial ; Genomics ; Mass Spectrometry ; Metabolic Engineering ; Proteomics
Czasopismo naukowe
Tytuł :
Transcriptome study and identification of potential marker genes related to the stable expression of recombinant proteins in CHO clones.
Autorzy :
Jamnikar U; Sandoz Biopharmaceuticals, Kolodvorska 27, SI-1234, Menges, Slovenia. .
Nikolic P; Jozef Stefan Institute, Jamova cesta 39, SI-1000, Ljubljana, Slovenia. .
Belic A; Sandoz Biopharmaceuticals, Kolodvorska 27, SI-1234, Menges, Slovenia. .
Blas M; Sandoz Biopharmaceuticals, Kolodvorska 27, SI-1234, Menges, Slovenia. .
Gaser D; Sandoz Biopharmaceuticals, Kolodvorska 27, SI-1234, Menges, Slovenia. .
Francky A; Sandoz Biopharmaceuticals, Kolodvorska 27, SI-1234, Menges, Slovenia. .
Laux H; Novartis Pharma AG, WKL-681.1.08, 4002, Basel, Switzerland. .
Blejec A; National Institute of Biology, Vecna pot 111, SI-1000, Ljubljana, Slovenia. .
Baebler S; National Institute of Biology, Vecna pot 111, SI-1000, Ljubljana, Slovenia. spela.baebler@nib.si.
Gruden K; National Institute of Biology, Vecna pot 111, SI-1000, Ljubljana, Slovenia. .
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Źródło :
BMC biotechnology [BMC Biotechnol] 2015 Oct 23; Vol. 15, pp. 98. Date of Electronic Publication: 2015 Oct 23.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Expression Profiling/*methods
Genetic Markers/*genetics
Recombinant Proteins/*genetics
Recombinant Proteins/*metabolism
Transcriptome/*genetics
Animals ; CHO Cells ; Cricetinae ; Cricetulus ; Oligonucleotide Array Sequence Analysis ; Real-Time Polymerase Chain Reaction
Czasopismo naukowe
Tytuł :
Roles of the crotonyl-CoA carboxylase/reductase homologues in acetate assimilation and biosynthesis of immunosuppressant FK506 in Streptomyces tsukubaensis.
Autorzy :
Blažič M; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000, Ljubljana, Slovenia. .; Acies Bio, d.o.o., Tehnološki park 21, 1000, Ljubljana, Slovenia. .
Kosec G; Acies Bio, d.o.o., Tehnološki park 21, 1000, Ljubljana, Slovenia. .
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia. spela.baebler@nib.si.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia. .
Petković H; Department of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000, Ljubljana, Slovenia. .; Acies Bio, d.o.o., Tehnološki park 21, 1000, Ljubljana, Slovenia. .
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Źródło :
Microbial cell factories [Microb Cell Fact] 2015 Oct 14; Vol. 14, pp. 164. Date of Electronic Publication: 2015 Oct 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Acyl-CoA Dehydrogenases/*genetics
Bacterial Proteins/*genetics
Immunosuppressive Agents/*metabolism
Streptomyces/*metabolism
Tacrolimus/*metabolism
Acetates/metabolism ; Acyl Coenzyme A/genetics ; Acyl Coenzyme A/metabolism ; Acyl-CoA Dehydrogenases/metabolism ; Bacterial Proteins/metabolism ; Immunosuppressive Agents/chemistry ; Multigene Family ; Promoter Regions, Genetic ; Real-Time Polymerase Chain Reaction ; Streptomyces/chemistry ; Streptomyces/genetics ; Tacrolimus/chemistry ; Transcriptome
Czasopismo naukowe

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