Autor: "Barski, Artem" - OpacWWW

Skocz do pozycji: 1 1.

Tytuł :: Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity.
Autorzy :: Harley JB; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. .; Division of Immunobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. .; Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. .; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA. .; US Department of Veterans Affairs Medical Center, Cincinnati, OH, USA. .
Chen X; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Pujato M; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Miller D; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Maddox A; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Forney C; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Magnusen AF; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Lynch A; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Chetal K; Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Yukawa M; Division of Allergy & Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Barski A; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.; Division of Allergy & Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.; Division of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Salomonis N; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.; Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Kaufman KM; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.; Division of Immunobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA.; US Department of Veterans Affairs Medical Center, Cincinnati, OH, USA.
Kottyan LC; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. .; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA. .
Weirauch MT; Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. .; Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. .; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA. .; Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. .; Pokaż więcej
Źródło :: Nature genetics [Nat Genet] 2018 May; Vol. 50 (5), pp. 699-707. Date of Electronic Publication: 2018 Apr 16.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :: Epstein-Barr Virus Nuclear Antigens/*genetics
Epstein-Barr Virus Nuclear Antigens/*immunology
Transcription Factors/*genetics
Viral Proteins/*genetics
Viral Proteins/*immunology
Autoimmunity/genetics ; Cell Line ; Cell Line, Tumor ; DNA-Binding Proteins/genetics ; Herpesvirus 4, Human/genetics ; Humans ; Lupus Erythematosus, Systemic/genetics ; Maximum Tolerated Dose ; Neoplasms/genetics ; Phenotype ; Protein Binding ; Regulatory Sequences, Nucleic Acid
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Skocz do pozycji: 2 2.

Tytuł :: Xist RNA repeat E is essential for ASH2L recruitment to the inactive X and regulates histone modifications and escape gene expression.
Autorzy :: Yue M; Division of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America.
Ogawa A; Division of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Yamada N; Division of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America.
Charles Richard JL; Division of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America.
Barski A; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America.; Division of Allergy & Immunology and Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Ogawa Y; Division of Reproductive Sciences, Perinatal Institute, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio, United States of America.; Pokaż więcej
Źródło :: PLoS genetics [PLoS Genet] 2017 Jul 07; Vol. 13 (7), pp. e1006890. Date of Electronic Publication: 2017 Jul 07 (Print Publication: 2017).
Typ publikacji :: Journal Article
MeSH Terms :: Transcription, Genetic*
DNA-Binding Proteins/*genetics
Nuclear Proteins/*genetics
RNA, Long Noncoding/*genetics
Transcription Factors/*genetics
X Chromosome Inactivation/*genetics
Animals ; Cell Differentiation/genetics ; DNA-Binding Proteins/biosynthesis ; Embryonic Stem Cells/metabolism ; Exons/genetics ; Gene Deletion ; Gene Expression Regulation ; Gene Silencing ; Histone Code/genetics ; Mice ; Nuclear Proteins/biosynthesis ; Transcription Factors/biosynthesis ; X Chromosome/genetics
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Szczegóły Pełny tekst

Skocz do pozycji: 3 3.

Tytuł :: Transcription Factor Repertoire of Homeostatic Eosinophilopoiesis.
Autorzy :: Bouffi C; Division of Allergy and Immunology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229;
Kartashov AV; Division of Allergy and Immunology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229;
Schollaert KL; Division of Allergy and Immunology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229;
Chen X; School of Electronic and Computing Systems, University of Cincinnati, Cincinnati, OH 45221;
Bacon WC; Division of Allergy and Immunology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229;
Weirauch MT; Center for Autoimmune Genomics and Etiology, Division of Biomedical Informatics, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229; Division of Developmental Biology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229; and.
Barski A; Division of Allergy and Immunology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229; Division of Human Genetics, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229.
Fulkerson PC; Division of Allergy and Immunology, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH 45229; .; Pokaż więcej
Źródło :: Journal of immunology (Baltimore, Md. : 1950) [J Immunol] 2015 Sep 15; Vol. 195 (6), pp. 2683-95. Date of Electronic Publication: 2015 Aug 12.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :: DNA-Binding Proteins/*genetics
Eosinophils/*cytology
Hematopoiesis/*genetics
Trans-Activators/*genetics
Transcription Factors/*genetics
Transcriptome/*genetics
Animals ; Binding Sites/genetics ; Cell Lineage/genetics ; Cell Lineage/immunology ; Cells, Cultured ; Chromatin/genetics ; Cytoplasmic Granules/metabolism ; Eosinophils/immunology ; Gene Expression Regulation/genetics ; Granulocyte Precursor Cells ; Hematopoiesis/immunology ; Ikaros Transcription Factor ; Mice ; Mice, Inbred BALB C ; Transcription Factors/biosynthesis
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Szczegóły

Skocz do pozycji: 4 4.

Tytuł :: The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter-proximal nucleosomes.
Autorzy :: Byeon B; Institute of Molecular Medicine and Genetics, Department of Neurology, Medical College of Georgia, Georgia Regents University, Augusta, Georgia 30912, USA.
Wang W
Barski A
Ranallo RT
Bao K
Schones DE
Zhao K
Wu C
Wu WH; Pokaż więcej
Źródło :: The Journal of biological chemistry [J Biol Chem] 2013 Aug 09; Vol. 288 (32), pp. 23182-93. Date of Electronic Publication: 2013 Jun 18.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural
MeSH Terms :: Adenosine Triphosphate/*metabolism
Chromatin Assembly and Disassembly/*physiology
Nucleosomes/*metabolism
Promoter Regions, Genetic/*physiology
Repressor Proteins/*metabolism
Saccharomyces cerevisiae/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Transcription Factors/*metabolism
Transcription, Genetic/*physiology
Adenosine Triphosphate/genetics ; Histones/genetics ; Histones/metabolism ; Nucleosomes/genetics ; Repressor Proteins/genetics ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae Proteins/genetics ; Transcription Factors/genetics ; Ubiquitination/physiology
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Szczegóły

Skocz do pozycji: 5 5.

Tytuł :: Genomic location analysis by ChIP-Seq.
Autorzy :: Barski A; Laboratory of Molecular Immunology, National Heart, Lung and Blood Institute, NIH, Bethesda, MD 20892, USA. />Zhao K; Pokaż więcej
Źródło :: Journal of cellular biochemistry [J Cell Biochem] 2009 May 01; Vol. 107 (1), pp. 11-8.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Review
MeSH Terms :: Chromosome Mapping/*methods
Oligonucleotide Array Sequence Analysis/*methods
Transcription Factors/*genetics
Gene Expression Regulation ; Genome ; Humans
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Szczegóły

Skocz do pozycji: 6 6.

Tytuł :: Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data.
Autorzy :: Jothi R; Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD 20894, USA.
Cuddapah S
Barski A
Cui K
Zhao K; Pokaż więcej
Źródło :: Nucleic acids research [Nucleic Acids Res] 2008 Sep; Vol. 36 (16), pp. 5221-31. Date of Electronic Publication: 2008 Aug 06.
Typ publikacji :: Journal Article; Research Support, N.I.H., Intramural
MeSH Terms :: Chromatin Immunoprecipitation*
Regulatory Elements, Transcriptional*
DNA-Binding Proteins/*metabolism
Genomics/*methods
Transcription Factors/*metabolism
Algorithms ; Base Sequence ; Binding Sites ; CCCTC-Binding Factor ; HeLa Cells ; Humans ; Jurkat Cells ; Molecular Sequence Data ; Repressor Proteins/metabolism ; STAT1 Transcription Factor/metabolism
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Szczegóły

Skocz do pozycji: 7 7.

Tytuł :: Identification of transcription factor target genes by ChIP display.
Autorzy :: Barski A; Department of Biochemistry & Molecular Biology, University of Southern California Keck School of Medicine, Los Angeles, CA, USA.
Pregizer S
Frenkel B; Pokaż więcej
Źródło :: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2008; Vol. 455, pp. 177-90.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :: Chromatin Immunoprecipitation*/instrumentation
Chromatin Immunoprecipitation*/methods
Gene Expression Profiling*/instrumentation
Gene Expression Profiling*/methods
Transcription Factors/*metabolism
Animals ; Gene Expression Regulation
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 8 8.

Tytuł :: ChIP Display: novel method for identification of genomic targets of transcription factors.
Autorzy :: Barski A; Department of Biochemistry and Molecular Biology, Institute for Genetic Medicine, Keck School of Medicine at the University of Southern California, 2250 Alcazar Street, Los Angeles, CA 90033, USA.
Frenkel B; Pokaż więcej
Źródło :: Nucleic acids research [Nucleic Acids Res] 2004 Jul 13; Vol. 32 (12), pp. e104. Date of Electronic Publication: 2004 Jul 13.
Typ publikacji :: Journal Article; Research Support, U.S. Gov't, P.H.S.
MeSH Terms :: Precipitin Tests*
Promoter Regions, Genetic*
Chromatin/*genetics
Transcription Factors/*metabolism
Animals ; Binding Sites ; Cell Line ; Chromatin/metabolism ; Core Binding Factor Alpha 1 Subunit ; Gene Expression Regulation ; Genome ; Neoplasm Proteins/metabolism
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 9 9.

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Tytuł :: Combinatorial patterns of histone acetylations and methylations in the human genome.
Autorzy :: Zhibin Wang
Chongzhi Zang
Rosenfeld, Jeffrey A.
Schones, Dustin E.
Barski, Artem
Cuddapah, Suresh
Kairong Cui
Tae-Young Roh
Weiqun Peng
Zhang, Michael Q.
Keji Zhao; Pokaż więcej
Temat :: ACETYLATION
GENES
TRANSCRIPTION factors
EUKARYOTIC cells
NUCLEOPROTEINS
CHROMATIN
Źródło :: Nature Genetics; Jul2008, Vol. 40 Issue 7, p897-903, 7p, 1 Diagram, 4 Graphs
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