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Tytuł :
Brief bone morphogenetic protein 2 treatment of glucocorticoid-inhibited MC3T3-E1 osteoblasts rescues commitment-associated cell cycle and mineralization without alteration of Runx2.
Autorzy :
Luppen CA; Department of Biochemistry, Institute for Genetic Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California 90033, USA.
Leclerc N
Noh T
Barski A
Khokhar A
Boskey AL
Smith E
Frenkel B
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Źródło :
The Journal of biological chemistry [J Biol Chem] 2003 Nov 07; Vol. 278 (45), pp. 44995-5003. Date of Electronic Publication: 2003 Aug 20.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, P.H.S.
MeSH Terms :
Neoplasm Proteins*
Transforming Growth Factor beta*
Bone Morphogenetic Proteins/*pharmacology
Calcification, Physiologic/*drug effects
Cell Cycle/*drug effects
Glucocorticoids/*pharmacology
Osteoblasts/*drug effects
Alkaline Phosphatase/metabolism ; Bone Morphogenetic Protein 2 ; Bone Morphogenetic Proteins/genetics ; Cell Differentiation ; Cell Line ; Core Binding Factor Alpha 1 Subunit ; DNA/metabolism ; Dexamethasone/pharmacology ; Humans ; Osteoblasts/cytology ; Osteoblasts/metabolism ; Osteocalcin/genetics ; Promoter Regions, Genetic/genetics ; Recombinant Proteins/pharmacology ; Spectroscopy, Fourier Transform Infrared ; Transcription Factors/metabolism ; Transfection
Czasopismo naukowe
Tytuł :
ChIP Display: novel method for identification of genomic targets of transcription factors.
Autorzy :
Barski, Artem
Frenkel, Baruch
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Źródło :
Nucleic Acids Research; Jul2004, Vol. 32 Issue 12, pe104-e104, 1p
Czasopismo naukowe
Tytuł :
Androgen receptor-mediated repression of novel target genes.
Autorzy :
Prescott J; Department of Preventive Medicine, Norris Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.
Jariwala U
Jia L
Cogan JP
Barski A
Pregizer S
Shen HC
Arasheben A
Neilson JJ
Frenkel B
Coetzee GA
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Źródło :
The Prostate [Prostate] 2007 Sep 15; Vol. 67 (13), pp. 1371-83.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Prostatic Neoplasms/*genetics
Receptors, Androgen/*physiology
Androgen Antagonists/pharmacology ; Anilides/pharmacology ; Cell Line, Tumor ; Cycloheximide/pharmacology ; Dihydrotestosterone/pharmacology ; Gene Expression Regulation, Neoplastic ; Humans ; Male ; Nitriles/pharmacology ; Prostatic Neoplasms/metabolism ; Protein Synthesis Inhibitors/pharmacology ; RNA, Messenger/biosynthesis ; RNA, Messenger/genetics ; RNA, Small Interfering/genetics ; Receptor, Muscarinic M1 ; Receptors, Androgen/genetics ; Receptors, Androgen/metabolism ; Receptors, Muscarinic/biosynthesis ; Receptors, Muscarinic/genetics ; Reverse Transcriptase Polymerase Chain Reaction ; Tosyl Compounds/pharmacology ; Transfection
Czasopismo naukowe
Tytuł :
Identification of novel Runx2 targets in osteoblasts: cell type-specific BMP-dependent regulation of Tram2.
Autorzy :
Pregizer S; Department of Biochemistry & Molecular Biology, Institute for Genetic Medicine, Keck School of Medicine at the University of Southern California, Los Angeles, California 90033, USA.
Barski A
Gersbach CA
García AJ
Frenkel B
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Źródło :
Journal of cellular biochemistry [J Cell Biochem] 2007 Dec 15; Vol. 102 (6), pp. 1458-71.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Bone Morphogenetic Proteins/*metabolism
Core Binding Factor Alpha 1 Subunit/*metabolism
Membrane Glycoproteins/*metabolism
Osteoblasts/*cytology
Osteoblasts/*metabolism
3T3 Cells ; Animals ; Cells, Cultured ; Chromatin Immunoprecipitation ; Clone Cells ; Core Binding Factor Alpha 1 Subunit/genetics ; Membrane Glycoproteins/genetics ; Mice ; RNA, Messenger/metabolism
Czasopismo naukowe
Tytuł :
Identification of transcription factor target genes by ChIP display.
Autorzy :
Barski A; Department of Biochemistry & Molecular Biology, University of Southern California Keck School of Medicine, Los Angeles, CA, USA.
Pregizer S
Frenkel B
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2008; Vol. 455, pp. 177-90.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Chromatin Immunoprecipitation*/instrumentation
Chromatin Immunoprecipitation*/methods
Gene Expression Profiling*/instrumentation
Gene Expression Profiling*/methods
Transcription Factors/*metabolism
Animals ; Gene Expression Regulation
Czasopismo naukowe
Tytuł :
Combinatorial patterns of histone acetylations and methylations in the human genome.
Autorzy :
Wang Z; Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, US National Institutes of Health, Bethesda, Maryland 20892, USA.
Zang C
Rosenfeld JA
Schones DE
Barski A
Cuddapah S
Cui K
Roh TY
Peng W
Zhang MQ
Zhao K
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Źródło :
Nature genetics [Nat Genet] 2008 Jul; Vol. 40 (7), pp. 897-903. Date of Electronic Publication: 2008 Jun 15.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Human*/physiology
Histone Acetyltransferases/*metabolism
Histone-Lysine N-Methyltransferase/*metabolism
Histones/*metabolism
Acetylation ; Cells, Cultured ; Chromosome Mapping ; Cluster Analysis ; Enhancer Elements, Genetic ; Histone Methyltransferases ; Humans ; Methylation ; Promoter Regions, Genetic ; Protein Binding ; Protein Methyltransferases
Czasopismo naukowe
Tytuł :
Combinatorial patterns of histone acetylations and methylations in the human genome.
Autorzy :
Zhibin Wang
Chongzhi Zang
Rosenfeld, Jeffrey A.
Schones, Dustin E.
Barski, Artem
Cuddapah, Suresh
Kairong Cui
Tae-Young Roh
Weiqun Peng
Zhang, Michael Q.
Keji Zhao
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Temat :
ACETYLATION
GENES
TRANSCRIPTION factors
EUKARYOTIC cells
NUCLEOPROTEINS
CHROMATIN
Źródło :
Nature Genetics; Jul2008, Vol. 40 Issue 7, p897-903, 7p, 1 Diagram, 4 Graphs
Czasopismo naukowe
Tytuł :
Genome-wide Mapping of HATs and HDACs Reveals Distinct Functions in Active and Inactive Genes
Autorzy :
Wang, Zhibin
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Źródło :
In Cell 2009 138(5):1019-1031
Czasopismo naukowe
Tytuł :
Genomic location analysis by ChIP-Seq.
Autorzy :
Barski A; Laboratory of Molecular Immunology, National Heart, Lung and Blood Institute, NIH, Bethesda, MD 20892, USA. />Zhao K
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Źródło :
Journal of cellular biochemistry [J Cell Biochem] 2009 May 01; Vol. 107 (1), pp. 11-8.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Review
MeSH Terms :
Chromosome Mapping/*methods
Oligonucleotide Array Sequence Analysis/*methods
Transcription Factors/*genetics
Gene Expression Regulation ; Genome ; Humans
Czasopismo naukowe
Tytuł :
Native chromatin preparation and Illumina/Solexa library construction.
Autorzy :
Cuddapah S; Laboratory of Molecular Immunology, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Barski A
Cui K
Schones DE
Wang Z
Wei G
Zhao K
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Źródło :
Cold Spring Harbor protocols [Cold Spring Harb Protoc] 2009 Jun; Vol. 2009 (6), pp. pdb.prot5237.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms :
Gene Library*
Chromatin/*metabolism
Sequence Analysis, DNA/*instrumentation
Sequence Analysis, DNA/*methods
CD4-Positive T-Lymphocytes/cytology ; CD4-Positive T-Lymphocytes/metabolism ; Cell Separation ; Chromatin Immunoprecipitation ; DNA Repair ; Humans ; Micrococcal Nuclease/metabolism ; Reverse Transcriptase Polymerase Chain Reaction
Czasopismo naukowe
Tytuł :
Chromatin poises miRNA- and protein-coding genes for expression.
Autorzy :
Barski A; Laboratory of Molecular Immunology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Jothi R
Cuddapah S
Cui K
Roh TY
Schones DE
Zhao K
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Źródło :
Genome research [Genome Res] 2009 Oct; Vol. 19 (10), pp. 1742-51. Date of Electronic Publication: 2009 Aug 27.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms :
Gene Expression*
Chromatin/*physiology
MicroRNAs/*genetics
Proteins/*genetics
CD4-Positive T-Lymphocytes/metabolism ; CD4-Positive T-Lymphocytes/physiology ; Cell Proliferation ; Cells, Cultured ; Chromatin/genetics ; Chromatin/metabolism ; Chromatin Assembly and Disassembly/physiology ; Humans ; Lymphocyte Activation/genetics ; Open Reading Frames/genetics ; Promoter Regions, Genetic/genetics
Czasopismo naukowe

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