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Tytuł :
CleanBSequences: an efficient curator of biological sequences in R.
Autorzy :
Pozzi FI; Instituto de Tecnología Agropecuaria, EEA Marcos Juárez, Ruta 12 km. 3, 2580, Marcos Juárez, Córdoba, Argentina. .; Cátedra de Microbiología, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, S2125ZAA, Zavalla, Santa Fe, Argentina. .
Green GY; Cátedra de Epidemiología, Facultad de Ciencias Veterinarias, Universidad Nacional de Rosario, S2170, Casilda, Santa Fe, Argentina.
Barbona IG; Cátedra de Estadística, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, S2125ZAA, Zavalla, Santa Fe, Argentina.
Rodríguez GR; Instituto de Investigaciones en Ciencias Agrarias de Rosario (IICAR) (CONICET-UNR), Zavalla, Argentina.; Cátedra de Genética, Facultad de Ciencias Agrarias, Universidad Nacional de Rosario, S2125ZAA, Zavalla, Santa Fe, Argentina.
Felitti SA; Instituto de Investigaciones en Ciencias Agrarias de Rosario (IICAR) (CONICET-UNR), Zavalla, Argentina.
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Źródło :
Molecular genetics and genomics : MGG [Mol Genet Genomics] 2020 Jul; Vol. 295 (4), pp. 837-841. Date of Electronic Publication: 2020 Apr 16.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Springer-Verlag Country of Publication: Germany NLM ID: 101093320 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1617-4623 (Electronic) Linking ISSN: 16174623 NLM ISO Abbreviation: Mol. Genet. Genomics Subsets: MEDLINE
MeSH Terms :
Computational Biology*
Software*
Genetic Markers/*genetics
Molecular Biology/*methods
Epigenomics/methods ; Genomics/methods ; Molecular Sequence Annotation/methods ; Sequence Alignment/methods ; Sequence Analysis/methods ; Transcriptome/genetics
Czasopismo naukowe
Tytuł :
The 27th annual Nucleic Acids Research database issue and molecular biology database collection.
Autorzy :
Rigden DJ; Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK.
Fernández XM; Institut Curie, 25 rue d'Ulm, 75005 Paris, France.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Jan 08; Vol. 48 (D1), pp. D1-D8.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res. Subsets: MEDLINE
MeSH Terms :
Databases, Genetic*/trends
Molecular Biology*/methods
Molecular Biology*/trends
Computational Biology ; Data Management ; Genomics ; Humans ; Web Browser
Czasopismo naukowe
Tytuł :
The International Conference on Intelligent Biology and Medicine 2019 (ICIBM 2019): conference summary and innovations in genomics.
Autorzy :
Mathé E; Department of Biomedical Informatics, The Ohio State University, Columbus, 43210, USA. .
Zhang C; Department of Medical & Molecular Genetics, School of Medicine, Indiana University, Indianapolis, Indiana, 46202, USA.
Wang K; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Ning X; Department of Biomedical Informatics, The Ohio State University, Columbus, 43210, USA.
Guo Y; Department of Internal Medicine, Comprehensive Cancer Center, University of New Mexico, Albuquerque, NM, 87131, USA.
Zhao Z; Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA. .; Human Genetics Center, School of Public Health, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA. .
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Źródło :
BMC genomics [BMC Genomics] 2019 Dec 30; Vol. 20 (Suppl 12), pp. 1005. Date of Electronic Publication: 2019 Dec 30.
Typ publikacji :
Congress; Editorial; Introductory Journal Article
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
MeSH Terms :
Genomics*/methods
Genomics*/trends
Systems Biology*/organization & administration
Systems Biology*/trends
Computational Biology ; Databases, Factual ; Gene Regulatory Networks/genetics ; High-Throughput Nucleotide Sequencing ; Humans ; Internationality
Czasopismo naukowe
Tytuł :
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.
Autorzy :
Stathias V; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, USA.; Center for Computational Science, University of Miami, USA.; BD2K-LINCS Data Coordination and Integration Center, USA.
Turner J; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, USA.; BD2K-LINCS Data Coordination and Integration Center, USA.
Koleti A; Center for Computational Science, University of Miami, USA.; BD2K-LINCS Data Coordination and Integration Center, USA.
Vidovic D; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, USA.; BD2K-LINCS Data Coordination and Integration Center, USA.
Cooper D; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, USA.; BD2K-LINCS Data Coordination and Integration Center, USA.
Fazel-Najafabadi M; BD2K-LINCS Data Coordination and Integration Center, USA.; Laboratory for Statistical Genomics and Systems Biology, Division of Biostatistics and Bioinformatics, Department of Environmental Health, University of Cincinnati College of Medicine, USA.
Pilarczyk M; BD2K-LINCS Data Coordination and Integration Center, USA.; Laboratory for Statistical Genomics and Systems Biology, Division of Biostatistics and Bioinformatics, Department of Environmental Health, University of Cincinnati College of Medicine, USA.
Terryn R; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, USA.
Chung C; BD2K-LINCS Data Coordination and Integration Center, USA.; Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, USA.
Umeano A; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, USA.
Clarke DJB; BD2K-LINCS Data Coordination and Integration Center, USA.; Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, USA.
Lachmann A; BD2K-LINCS Data Coordination and Integration Center, USA.; Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, USA.
Evangelista JE; BD2K-LINCS Data Coordination and Integration Center, USA.; Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, USA.
Ma'ayan A; BD2K-LINCS Data Coordination and Integration Center, USA.; Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, USA.
Medvedovic M; BD2K-LINCS Data Coordination and Integration Center, USA.; Laboratory for Statistical Genomics and Systems Biology, Division of Biostatistics and Bioinformatics, Department of Environmental Health, University of Cincinnati College of Medicine, USA.
Schürer SC; Department of Molecular and Cellular Pharmacology, Miller School of Medicine, University of Miami, USA.; Center for Computational Science, University of Miami, USA.; BD2K-LINCS Data Coordination and Integration Center, USA.; Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Jan 08; Vol. 48 (D1), pp. D431-D439.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res. Subsets: MEDLINE
MeSH Terms :
Cell Biology*
Databases, Factual*
Clinical Trials as Topic ; Computational Biology ; Data Curation ; Humans ; Information Storage and Retrieval ; Metadata ; National Institutes of Health (U.S.) ; United States ; User-Computer Interface
Czasopismo naukowe
Tytuł :
Determination of scoring functions for protein damage susceptibility.
Autorzy :
Fichtner M; Matthias Schleiden Institute, Department of Bioinformatics, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany. Electronic address: .
Schuster S; Matthias Schleiden Institute, Department of Bioinformatics, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany.
Stark H; Matthias Schleiden Institute, Department of Bioinformatics, Friedrich Schiller University Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany; Institute of Zoology and Evolutionary Research, Friedrich Schiller University Jena, Erbertstraße 1, 07743 Jena, Germany.
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Źródło :
Bio Systems [Biosystems] 2020 Jan; Vol. 187, pp. 104035. Date of Electronic Publication: 2019 Oct 12.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Elsevier Science Ireland Country of Publication: Ireland NLM ID: 0430773 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1872-8324 (Electronic) Linking ISSN: 03032647 NLM ISO Abbreviation: BioSystems Subsets: MEDLINE
MeSH Terms :
Computational Biology*
Protein Conformation*
Amino Acids/*chemistry
Aging/physiology ; Amino Acids/physiology ; Data Mining ; Halogenation ; Humans ; Hydroxylation ; Models, Biological ; Systems Biology
Czasopismo naukowe
Tytuł :
The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases.
Autorzy :
Zhao Z; Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA. .
Dai Y; Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA.
Zhang C; Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Mathé E; Department of Biomedical Informatics, The Ohio State University College of Medicine, Columbus, OH, 43214, USA.
Wei L; Department of Biomedical Informatics, The Ohio State University College of Medicine, Columbus, OH, 43214, USA.
Wang K; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA. .; Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2019 Dec 20; Vol. 20 (Suppl 24), pp. 676. Date of Electronic Publication: 2019 Dec 20.
Typ publikacji :
Editorial
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE
MeSH Terms :
Computational Biology*
Artificial Intelligence ; Humans ; Medicine ; Periodicals as Topic ; Systems Biology
Opinia redakcyjna
Tytuł :
Nine quick tips for analyzing network data.
Autorzy :
Miele V; Université de Lyon, F-69000 Lyon, Université Lyon 1, CNRS, UMR5558, Laboratoire de Biométrie et Biologie Évolutive, Villeurbanne, France.
Matias C; Laboratoire de Probabilités, Statistique et Modélisation, Centre National de la Recherche Scientifique, Sorbonne Université et Université de Paris, Paris, France.
Robin S; UMR MIA-Paris, AgroParisTech, INRA, Université Paris-Saclay, Paris, France.
Dray S; Université de Lyon, F-69000 Lyon, Université Lyon 1, CNRS, UMR5558, Laboratoire de Biométrie et Biologie Évolutive, Villeurbanne, France.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2019 Dec 19; Vol. 15 (12), pp. e1007434. Date of Electronic Publication: 2019 Dec 19 (Print Publication: 2019).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput. Biol. Subsets: MEDLINE
MeSH Terms :
Systems Biology*
Animals ; Cluster Analysis ; Computational Biology ; Computer Graphics ; Computer Simulation ; Data Interpretation, Statistical ; Gene Regulatory Networks ; Humans ; Models, Biological ; Protein Interaction Maps ; Social Networking ; Software
Czasopismo naukowe
Tytuł :
Synthetic metabolic computation in a bioluminescence-sensing system.
Autorzy :
Barger N; Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel.
Litovco P; Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel.
Li X; Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel.
Habib M; Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel.
Daniel R; Department of Biomedical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2019 Nov 04; Vol. 47 (19), pp. 10464-10474.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res. Subsets: MEDLINE
MeSH Terms :
Biosensing Techniques*
Computational Biology*
Promoter Regions, Genetic/*genetics
Escherichia coli/genetics ; Gene Regulatory Networks/genetics ; Metabolic Engineering ; Operon/genetics ; Synthetic Biology
Czasopismo naukowe
Tytuł :
The role of circular dichroism spectroscopy in the era of integrative structural biology.
Autorzy :
Wallace BA; Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, UK. Electronic address: .
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Źródło :
Current opinion in structural biology [Curr Opin Struct Biol] 2019 Oct; Vol. 58, pp. 191-196. Date of Electronic Publication: 2019 May 08.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
Journal Info :
Publisher: Elsevier Science Country of Publication: England NLM ID: 9107784 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-033X (Electronic) Linking ISSN: 0959440X NLM ISO Abbreviation: Curr. Opin. Struct. Biol. Subsets: MEDLINE
MeSH Terms :
Biology*
Circular Dichroism*
Computational Biology ; Databases, Protein ; Software
Czasopismo naukowe
Tytuł :
A systems biology approach towards the identification of candidate therapeutic genes and potential biomarkers for Parkinson's disease.
Autorzy :
Sakharkar MK; Drug Discovery and Development Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, Canada.
Kashmir Singh SK; Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia.
Rajamanickam K; Drug Discovery and Development Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, Canada.
Mohamed Essa M; Sultan Qaboos University, Muscat, Oman.
Yang J; Drug Discovery and Development Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, Canada.
Chidambaram SB; Department of Pharmacology, JSS College of Pharmacy, JSSAHER, Karnataka, India.
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Źródło :
PloS one [PLoS One] 2019 Sep 05; Vol. 14 (9), pp. e0220995. Date of Electronic Publication: 2019 Sep 05 (Print Publication: 2019).
Typ publikacji :
Journal Article
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS ONE Subsets: MEDLINE
MeSH Terms :
Biomarkers*
Genetic Association Studies*/methods
Genetic Predisposition to Disease*
Systems Biology*/methods
Parkinson Disease/*etiology
Alleles ; Brain/drug effects ; Brain/metabolism ; Brain/physiopathology ; Computational Biology/methods ; Drug Discovery ; Gene Expression Profiling ; Humans ; Molecular Sequence Annotation ; Molecular Targeted Therapy
Czasopismo naukowe
Tytuł :
Sebastian Bednarek.
Autorzy :
Castroverde CDM; Department of Biology.; Wilfrid Laurier University Waterloo, Ontario Canada.
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Źródło :
The Plant cell [Plant Cell] 2019 Sep; Vol. 31 (9), pp. 1931-1933. Date of Electronic Publication: 2019 Jul 16.
Typ publikacji :
Biography; Editorial; Historical Article
Journal Info :
Publisher: American Society of Plant Physiologists Country of Publication: United States NLM ID: 9208688 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1532-298X (Electronic) Linking ISSN: 10404651 NLM ISO Abbreviation: Plant Cell Subsets: MEDLINE
MeSH Terms :
Cell Biology*
Plant Cells*
Genomics ; History, 21st Century ; Humans ; Publications ; Synthetic Biology
Personal Name as Subject :
Bednarek S
Opinia redakcyjna
Tytuł :
Benchmark problems for dynamic modeling of intracellular processes.
Autorzy :
Hass H; Center for Systems Biology (ZBSA), University of Freiburg, Freiburg 79104, Germany.; Institute of Physics, University of Freiburg, Freiburg 79104, Germany.
Loos C; Helmholtz Zentrum München - German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg 85764, Germany.; Technische Universität München, Center for Mathematics, Chair of Mathematical Modeling of Biological Systems, Garching 85748, Germany.
Raimúndez-Álvarez E; Helmholtz Zentrum München - German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg 85764, Germany.; Technische Universität München, Center for Mathematics, Chair of Mathematical Modeling of Biological Systems, Garching 85748, Germany.
Timmer J; Center for Systems Biology (ZBSA), University of Freiburg, Freiburg 79104, Germany.; Institute of Physics, University of Freiburg, Freiburg 79104, Germany.; Center for Data Analysis and Modelling (FDM), University of Freiburg, Freiburg 79104, Germany.; BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg 79104, Germany.
Hasenauer J; Helmholtz Zentrum München - German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg 85764, Germany.; Technische Universität München, Center for Mathematics, Chair of Mathematical Modeling of Biological Systems, Garching 85748, Germany.
Kreutz C; Center for Systems Biology (ZBSA), University of Freiburg, Freiburg 79104, Germany.; Institute of Physics, University of Freiburg, Freiburg 79104, Germany.; Center for Data Analysis and Modelling (FDM), University of Freiburg, Freiburg 79104, Germany.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2019 Sep 01; Vol. 35 (17), pp. 3073-3082.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
MeSH Terms :
Benchmarking*
Computational Biology*
Algorithms ; Models, Biological ; Software ; Systems Biology
Czasopismo naukowe
Tytuł :
Fly-QMA: Automated analysis of mosaic imaginal discs in Drosophila.
Autorzy :
Bernasek SM; Department of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois, United States of America.; NSF-Simons Center for Quantitative Biology, Northwestern University, Evanston, Illinois, United States of America.
Peláez N; Department of Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America.
Carthew RW; NSF-Simons Center for Quantitative Biology, Northwestern University, Evanston, Illinois, United States of America.; Department of Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America.; Department of Biochemistry and Molecular Genetics, Northwestern University, Evanston, Illinois, United States of America.
Bagheri N; Department of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois, United States of America.; NSF-Simons Center for Quantitative Biology, Northwestern University, Evanston, Illinois, United States of America.; Department of Biology, University of Washington, Seattle, Washington, United States of America.; Department of Chemical Engineering, University of Washington, Seattle, Washington, United States of America.; Northwestern Institute on Complex Systems, Northwestern University, Evanston, Illinois, United States of America.
Amaral LAN; Department of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois, United States of America.; NSF-Simons Center for Quantitative Biology, Northwestern University, Evanston, Illinois, United States of America.; Northwestern Institute on Complex Systems, Northwestern University, Evanston, Illinois, United States of America.; Department of Physics and Astronomy, Northwestern University, Evanston, Illinois, United States of America.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2020 Mar 03; Vol. 16 (3), pp. e1007406. Date of Electronic Publication: 2020 Mar 03 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput. Biol. Subsets: MEDLINE
MeSH Terms :
Computational Biology/*methods
Data Curation/*methods
Mosaicism/*embryology
Animals ; Developmental Biology/methods ; Drosophila Proteins/genetics ; Drosophila melanogaster/genetics ; Gene Expression Regulation, Developmental/genetics ; Imaginal Discs/metabolism ; Larva/metabolism ; Loss of Function Mutation/genetics ; Microscopy, Confocal ; Software ; Wings, Animal/embryology
Czasopismo naukowe
Tytuł :
Engineering repressors with coevolutionary cues facilitates toggle switches with a master reset.
Autorzy :
Dimas RP; Department of Biology, The University of Texas at Tyler, Tyler, TX 75799, USA.
Jiang XL; Department of Biological Sciences, The University of Texas at Dallas, Dallas, TX 75080, USA.
Alberto de la Paz J; Department of Biological Sciences, The University of Texas at Dallas, Dallas, TX 75080, USA.
Morcos F; Department of Biological Sciences, The University of Texas at Dallas, Dallas, TX 75080, USA.; Department of Bioengineering, The University of Texas at Dallas, Dallas, TX 75080, USA.; Center for Systems Biology, The University of Texas at Dallas, Dallas, TX 75080, USA.
Chan CTY; Department of Biology, The University of Texas at Tyler, Tyler, TX 75799, USA.; Department of Chemistry and Biochemistry, The University of Texas at Tyler, Tyler, TX 75799, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2019 Jun 04; Vol. 47 (10), pp. 5449-5463.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res. Subsets: MEDLINE
MeSH Terms :
Models, Genetic*
Signal Processing, Computer-Assisted*
Synthetic Biology*
Protein Engineering/*methods
Transcription Factors/*genetics
Algorithms ; Allosteric Site ; Bacteria/genetics ; Computational Biology ; Gene Regulatory Networks ; Kinetics ; Ligands ; Models, Statistical ; Plasmids/genetics ; Protein Binding ; Protein Domains ; ROC Curve ; Signal Transduction ; Stochastic Processes
Czasopismo naukowe
Tytuł :
Systems analysis reveals complex biological processes during virus infection fate decisions.
Autorzy :
Argilaguet J; Infection Biology Laboratory, Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra, Barcelona, Catalonia 08003, Spain.
Pedragosa M; Infection Biology Laboratory, Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra, Barcelona, Catalonia 08003, Spain.
Esteve-Codina A; CNAG-CRG, Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, 08028 Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Catalonia 08003, Spain.
Riera G; Infection Biology Laboratory, Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra, Barcelona, Catalonia 08003, Spain.
Vidal E; IRTA, Centre de Recerca en Sanitat Animal (CReSA-IRTA-UAB), Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Catalonia, Spain.
Peligero-Cruz C; Infection Biology Laboratory, Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra, Barcelona, Catalonia 08003, Spain.
Casella V; Infection Biology Laboratory, Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra, Barcelona, Catalonia 08003, Spain.
Andreu D; Laboratory of Proteomics and Protein Chemistry, DCEXS, Universitat Pompeu Fabra, 08003 Barcelona, Spain.
Kaisho T; Department of Immunology, Institute of Advanced Medicine, Wakayama Medical University, Wakayama 641-8509, Japan.; Laboratory for Immune Regulation, World Premier International Research Center Initiative, Immunology Frontier Research Center, Osaka University, Osaka 565-0871, Japan.
Bocharov G; Marchuk Institute of Numerical Mathematics, Russian Academy of Sciences, Moscow, 119333, Russia.; Sechenov First Moscow State Medical University, Moscow, 119991, Russia.
Ludewig B; Institute for Immunobiology, Kantonsspital St. Gallen, 9007 St. Gallen, Switzerland.
Heath S; CNAG-CRG, Center for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, 08028 Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Catalonia 08003, Spain.
Meyerhans A; Infection Biology Laboratory, Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra, Barcelona, Catalonia 08003, Spain.; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, 08003, Spain.
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Źródło :
Genome research [Genome Res] 2019 Jun; Vol. 29 (6), pp. 907-919. Date of Electronic Publication: 2019 May 28.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res. Subsets: MEDLINE
MeSH Terms :
Host-Pathogen Interactions*/genetics
Host-Pathogen Interactions*/immunology
Models, Biological*
Systems Biology*/methods
Virus Physiological Phenomena*
Virus Diseases/*virology
Acute Disease ; Animals ; Biomarkers ; Chronic Disease ; Computational Biology/methods ; Gene Expression Profiling ; High-Throughput Nucleotide Sequencing ; Immunity, Cellular ; Immunity, Humoral ; Inflammation Mediators/metabolism ; Mice ; Spleen/immunology ; Spleen/metabolism
Czasopismo naukowe
Tytuł :
SJARACNe: a scalable software tool for gene network reverse engineering from big data.
Autorzy :
Khatamian A; Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Paull EO; Department of Systems Biology, Columbia University, New York, NY, USA.
Califano A; Department of Systems Biology, Columbia University, New York, NY, USA.
Yu J; Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2019 Jun 01; Vol. 35 (12), pp. 2165-2166.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
MeSH Terms :
Computational Biology*
Gene Regulatory Networks*
Algorithms ; Big Data ; Software ; Systems Biology
Czasopismo naukowe
Tytuł :
A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks.
Autorzy :
Ali Al-Radhawi M; Departments of Electrical and Computer Engineering and of Bioengineering, Northeastern University, Boston, Massachusetts, United States of America.
Angeli D; Department of Electrical & Electronic Engineering, Imperial College London, London, United Kingdom.; Dipartimento di Ingegneria dell'Informazione, University of Florence, Florence, Italy.
Sontag ED; Departments of Electrical and Computer Engineering and of Bioengineering, Northeastern University, Boston, Massachusetts, United States of America.; Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, United States of America.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2020 Feb 24; Vol. 16 (2), pp. e1007681. Date of Electronic Publication: 2020 Feb 24 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput. Biol. Subsets: MEDLINE
MeSH Terms :
Gene Regulatory Networks*
Protein Processing, Post-Translational*
Signal Transduction*
Systems Biology*
Computational Biology/*methods
Algorithms ; Computer Simulation ; Extracellular Signal-Regulated MAP Kinases/metabolism ; Humans ; Kinetics ; Metabolic Networks and Pathways ; Models, Theoretical ; Protein Binding ; Software ; T-Lymphocytes/metabolism
Czasopismo naukowe
Tytuł :
Unraveling Disease Pathophysiology with Mathematical Modeling.
Autorzy :
Foy BH; Center for Systems Biology and Department of Pathology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA; email: .; Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Gonçalves BP; Center for Systems Biology and Department of Pathology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA; email: .; Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Higgins JM; Center for Systems Biology and Department of Pathology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA; email: .; Department of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
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Źródło :
Annual review of pathology [Annu Rev Pathol] 2020 Jan 24; Vol. 15, pp. 371-394.
Typ publikacji :
Journal Article; Review
Journal Info :
Publisher: Annual Reviews Country of Publication: United States NLM ID: 101275111 Publication Model: Print Cited Medium: Internet ISSN: 1553-4014 (Electronic) Linking ISSN: 15534006 NLM ISO Abbreviation: Annu Rev Pathol Subsets: MEDLINE
MeSH Terms :
Models, Theoretical*
Biomedical Research/*methods
Computational Biology/*methods
Disease/*etiology
Animals ; Biomedical Research/trends ; Cell Biology/trends ; Computational Biology/trends ; Computer Simulation ; Humans ; Physiological Phenomena
Czasopismo naukowe
Tytuł :
Physics and Biology (of Chromosomes).
Autorzy :
Marko JF; Department of Physics & Astronomy and Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA; CNRS, Laboratoire de Physique Théorique de la Matière Condensée (LPTMC), Sorbonne Université, Paris, 75005, France. Electronic address: .
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Źródło :
Journal of molecular biology [J Mol Biol] 2020 Jan 17; Vol. 432 (2), pp. 621-631. Date of Electronic Publication: 2019 Dec 20.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
Journal Info :
Publisher: Elsevier Country of Publication: England NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J. Mol. Biol. Subsets: MEDLINE
MeSH Terms :
Chromosomes/*genetics
Molecular Biology/*methods
Physics/*methods
Biophysics/methods ; Chromosomes/ultrastructure ; Computational Biology/methods ; Humans
Czasopismo naukowe

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