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Wyszukujesz frazę ""Biology"" wg kryterium: Temat


Starter badań:

Tytuł:
Hybrid computational methods combining experimental information with molecular dynamics.
Autorzy:
Mondal A; Quantum Theory Project, Department of Chemistry, University of Florida, Leigh, UK. Electronic address: https:_chem.
Lenz S; Department of Chemistry, University of Calgary, 2500 University Drive, Canada.
MacCallum JL; Department of Chemistry, University of Calgary, 2500 University Drive, Canada. Electronic address: https:.
Perez A; Quantum Theory Project, Department of Chemistry, University of Florida, Leigh, UK. Electronic address: .
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Źródło:
Current opinion in structural biology [Curr Opin Struct Biol] 2023 Aug; Vol. 81, pp. 102609. Date of Electronic Publication: 2023 May 22.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Molecular Dynamics Simulation*
Molecular Biology*
Macromolecular Substances/chemistry ; Computational Biology
Czasopismo naukowe
Tytuł:
MICFuzzy: A maximal information content based fuzzy approach for reconstructing genetic networks.
Autorzy:
Nakulugamuwa Gamage H; Health Innovation and Transformation Centre, Federation University, Churchill, Victoria, Australia.
Chetty M; Health Innovation and Transformation Centre, Federation University, Churchill, Victoria, Australia.
Lim S; Health Innovation and Transformation Centre, Federation University, Churchill, Victoria, Australia.
Hallinan J; BioThink, Queensland, Australia.
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Źródło:
PloS one [PLoS One] 2023 Jul 07; Vol. 18 (7), pp. e0288174. Date of Electronic Publication: 2023 Jul 07 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Algorithms*
Computational Biology*/methods
Gene Regulatory Networks ; Systems Biology ; Genes, Regulator ; Models, Genetic
Czasopismo naukowe
Tytuł:
SBOannotator: a Python tool for the automated assignment of systems biology ontology terms.
Autorzy:
Leonidou N; Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.; Department of Computer Science, Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.; German Center for Infection Research (DZIF), partner site Tübingen, Germany.; Cluster of Excellence 'Controlling Microbes to Fight Infections,' Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.
Fritze E; Department of Computer Science, Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.
Renz A; Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.; Department of Computer Science, Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.; Cluster of Excellence 'Controlling Microbes to Fight Infections,' Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.
Dräger A; Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.; Department of Computer Science, Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.; German Center for Infection Research (DZIF), partner site Tübingen, Germany.; Cluster of Excellence 'Controlling Microbes to Fight Infections,' Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.
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Źródło:
Bioinformatics (Oxford, England) [Bioinformatics] 2023 Jul 01; Vol. 39 (7).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Systems Biology*
Biological Ontologies*
Computational Biology ; Reproducibility of Results ; Computer Simulation ; Gene Ontology
Czasopismo naukowe
Tytuł:
Synthetic developmental biology: New tools to deconstruct and rebuild developmental systems.
Autorzy:
McNamara HM; Lewis Sigler Institute, Princeton University, Princeton, NJ 08544, USA; Department of Physics, Princeton University, Princeton, NJ 08544, USA; Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
Ramm B; Department of Physics, Princeton University, Princeton, NJ 08544, USA; Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
Toettcher JE; Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA. Electronic address: .
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Źródło:
Seminars in cell & developmental biology [Semin Cell Dev Biol] 2023 May 30; Vol. 141, pp. 33-42. Date of Electronic Publication: 2022 Apr 26.
Typ publikacji:
Journal Article; Review; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Synthetic Biology*/methods
Signal Transduction*
Gene Regulatory Networks ; Developmental Biology/methods
Czasopismo naukowe
Tytuł:
Deciphering crucial genes in multiple sclerosis pathogenesis and drug repurposing: A systems biology approach.
Autorzy:
Dadashkhan S; Molecular Medicine Research Centre, Universitätsklinikum Jena, Jena, Germany; Department of Biology, Science and Research Branch, Islamic Azad University, Tehran, Iran.
Mirmotalebisohi SA; Student Research Committee, Department of Biotechnology, School of Advanced Technologies in Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran; Cellular and Molecular Biology Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Poursheykhi H; Department of New Scientist, Faculty of Medical Sciences, Tehran Branch, Islamic Azad University, Tehran, Iran.
Sameni M; Student Research Committee, Department of Biotechnology, School of Advanced Technologies in Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran; Cellular and Molecular Biology Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Ghani S; Cellular and Molecular Biology Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran; Department of Biotechnology, School of Advanced Technologies in Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Abbasi M; Zhino-Gene Research Services Co., Tehran, Iran.
Kalantari S; Cellular and Molecular Biology Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran; Department of Biotechnology, School of Advanced Technologies in Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran; Regenerative Medicine Group (REMED), Universal Scientific Education & Research Network (USERN), Tehran, Iran.
Zali H; Department of Tissue Engineering and Applied Cell Sciences, School of Advanced Technologies in Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran. Electronic address: .
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Źródło:
Journal of proteomics [J Proteomics] 2023 May 30; Vol. 280, pp. 104890. Date of Electronic Publication: 2023 Mar 24.
Typ publikacji:
Journal Article
MeSH Terms:
Systems Biology*
Multiple Sclerosis*
Humans ; Gene Expression Profiling/methods ; Drug Repositioning ; Computational Biology/methods ; Biomarkers
Czasopismo naukowe
Tytuł:
Structural biology: A golden era.
Autorzy:
Carugo O; Department of Chemistry, University of Pavia, Pavia, Italy.
Djinović-Carugo K; Department of Structural and Computational Biology, Max Perutz Labs, University of Vienna, Vienna, Austria.; European Molecular Biology Laboratory (EMBL), Grenoble, France.; Faculty of Chemistry and Chemical Technology, Department of Biochemistry, University of Ljubljana, Ljubljana, Slovenia.
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Źródło:
PLoS biology [PLoS Biol] 2023 Jun 29; Vol. 21 (6), pp. e3002187. Date of Electronic Publication: 2023 Jun 29 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Proteins*
Molecular Biology*
Algorithms ; Computational Biology/methods
Czasopismo naukowe
Tytuł:
Using single cell atlas data to reconstruct regulatory networks.
Autorzy:
Song Q; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Ruffalo M; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Bar-Joseph Z; Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.; Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Apr 24; Vol. 51 (7), pp. e38.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Computational Biology*
Algorithms ; Gene Regulatory Networks ; Systems Biology ; Single-Cell Analysis ; Atlases as Topic
Czasopismo naukowe
Tytuł:
Novel Ground-Up 3D Multicellular Simulators for Synthetic Biology CAD Integrating Stochastic Gillespie Simulations Benchmarked with Topologically Variable SBML Models.
Autorzy:
Matzko RO; Department of Computer Science, University of Bradford, Bradford BD7 1DP, UK.
Mierla L; Department of Computer Science, University of Bradford, Bradford BD7 1DP, UK.
Konur S; Department of Computer Science, University of Bradford, Bradford BD7 1DP, UK.
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Źródło:
Genes [Genes (Basel)] 2023 Jan 06; Vol. 14 (1). Date of Electronic Publication: 2023 Jan 06.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Software*
Synthetic Biology*
Humans ; Systems Biology/methods ; Models, Biological ; Computer Simulation
Czasopismo naukowe
Tytuł:
A conversation with ChatGPT on the role of computational systems biology in stem cell research.
Autorzy:
Cahan P; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA; Institute for Cell Engineering, Johns Hopkins University, Baltimore, MD 21205, USA. Electronic address: .
Treutlein B; Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland; Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany. Electronic address: .
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Źródło:
Stem cell reports [Stem Cell Reports] 2023 Jan 10; Vol. 18 (1), pp. 1-2.
Typ publikacji:
Editorial
MeSH Terms:
Systems Biology*
Stem Cell Research*
Computational Biology ; Communication
Opinia redakcyjna
Tytuł:
The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.
Autorzy:
Rigden DJ; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK.
Fernández XM; IQVIA Ltd., The Point, 37 North Wharf Road, London W2 1AF, UK.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D1-D8.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Nucleic Acid*
Molecular Biology*
Nucleic Acids*
Computational Biology ; Internet ; Periodicals as Topic
Czasopismo naukowe
Tytuł:
NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity.
Autorzy:
Su K; Department of Biomedical Informatics, Emory University, Atlanta, GA, 30322, USA.
Katebi A; Department of Bioengineering|, Northeastern University, Boston, MA, 02115, USA.; Center for Theoretical Biological Physics, Northeastern University, Boston, MA, 02115, USA.
Kohar V; The Jackson Laboratory, Bar Harbor, ME, 04609, USA.
Clauss B; Center for Theoretical Biological Physics, Northeastern University, Boston, MA, 02115, USA.; Genetics Program, Graduate School of Biomedical Sciences, Tufts University, Boston, MA, 02111, USA.
Gordin D; Department of Bioengineering|, Northeastern University, Boston, MA, 02115, USA.; Center for Theoretical Biological Physics, Northeastern University, Boston, MA, 02115, USA.
Qin ZS; Department of Biostatistics and Bioinformatics, Emory University, Atlanta, GA, 30322, USA.
Karuturi RKM; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.; Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA.; Graduate School of Biological Sciences & Eng., University of Maine, Orono, ME, USA.
Li S; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.; Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA.
Lu M; Department of Bioengineering|, Northeastern University, Boston, MA, 02115, USA. .; Center for Theoretical Biological Physics, Northeastern University, Boston, MA, 02115, USA. .; The Jackson Laboratory, Bar Harbor, ME, 04609, USA. .; Genetics Program, Graduate School of Biomedical Sciences, Tufts University, Boston, MA, 02111, USA. .
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Źródło:
Genome biology [Genome Biol] 2022 Dec 27; Vol. 23 (1), pp. 270. Date of Electronic Publication: 2022 Dec 27.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Transcription Factors*/metabolism
Computational Biology*
Gene Expression Regulation ; Gene Regulatory Networks ; Systems Biology ; Algorithms
Czasopismo naukowe
Tytuł:
From genetics to biotechnology: Synthetic biology as a flexible course-embedded research experience.
Autorzy:
Johnson KC; Department of Life Sciences, University of New Hampshire, Manchester, New Hampshire, USA.
Sabel JL; Department of Biological Sciences, University of Memphis, Memphis, Tennessee, USA.
Cole J; Department of Biological Sciences, University of Memphis, Memphis, Tennessee, USA.
Pruett CL; Department of Biology, Ouachita Baptist University, Arkadelphia, Arkansas, USA.
Plymale R; Department of Biology, Ouachita Baptist University, Arkadelphia, Arkansas, USA.
Reyna NS; Department of Biology, Ouachita Baptist University, Arkadelphia, Arkansas, USA.
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Źródło:
Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology [Biochem Mol Biol Educ] 2022 Nov; Vol. 50 (6), pp. 580-591. Date of Electronic Publication: 2022 Sep 02.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Curriculum*
Synthetic Biology*/education
Humans ; Students ; Engineering/education ; Thinking ; Biology/education
Czasopismo naukowe
Tytuł:
NLoed: A Python Package for Nonlinear Optimal Experimental Design in Systems Biology.
Autorzy:
Braniff N; Department of Applied Mathematics, University of Waterloo, Waterloo, OntarioN2L 3G1, Canada.
Pearce T; Department of Applied Mathematics, University of Waterloo, Waterloo, OntarioN2L 3G1, Canada.
Lu Z; Department of Applied Mathematics, University of Waterloo, Waterloo, OntarioN2L 3G1, Canada.
Astwood M; Department of Applied Mathematics, University of Waterloo, Waterloo, OntarioN2L 3G1, Canada.
Forrest WSR; Department of Applied Mathematics, University of Waterloo, Waterloo, OntarioN2L 3G1, Canada.
Receno C; Department of Applied Mathematics, University of Waterloo, Waterloo, OntarioN2L 3G1, Canada.
Ingalls B; Department of Applied Mathematics, University of Waterloo, Waterloo, OntarioN2L 3G1, Canada.
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Źródło:
ACS synthetic biology [ACS Synth Biol] 2022 Dec 16; Vol. 11 (12), pp. 3921-3928. Date of Electronic Publication: 2022 Dec 06.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Systems Biology*/methods
Research Design*
Models, Biological ; Software ; Synthetic Biology ; Escherichia coli/genetics
Czasopismo naukowe
Tytuł:
Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?
Autorzy:
Yaschenko AE; Department of Plant and Microbial Biology, Program in Genetics, North Carolina State University, Raleigh, NC 27695, USA.
Fenech M; Department of Plant and Microbial Biology, Program in Genetics, North Carolina State University, Raleigh, NC 27695, USA.
Mazzoni-Putman S; Department of Horticultural Science, North Carolina State University, Raleigh, NC 27695, USA.
Alonso JM; Department of Plant and Microbial Biology, Program in Genetics, North Carolina State University, Raleigh, NC 27695, USA.
Stepanova AN; Department of Plant and Microbial Biology, Program in Genetics, North Carolina State University, Raleigh, NC 27695, USA. Electronic address: .
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Źródło:
Current opinion in plant biology [Curr Opin Plant Biol] 2022 Aug; Vol. 68, pp. 102241. Date of Electronic Publication: 2022 Jun 11.
Typ publikacji:
Journal Article; Review; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Gene Regulatory Networks*/genetics
Synthetic Biology*
Computational Biology ; Gene Expression ; Plants/genetics ; Plants/metabolism ; Promoter Regions, Genetic/genetics ; Transcription Factors/metabolism
Czasopismo naukowe
Tytuł:
A comprehensive review on genomics, systems biology and structural biology approaches for combating antimicrobial resistance in ESKAPE pathogens: computational tools and recent advancements.
Autorzy:
Priyamvada P; Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), 632014, Vellore, India.; Department of Bio-Sciences, SBST, VIT, 632014, Vellore, India.
Debroy R; Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), 632014, Vellore, India.; Department of Bio-Medical Sciences, SBST, VIT, 632014, Vellore, India.
Anbarasu A; Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), 632014, Vellore, India.; Department of Biotechnology, SBST, VIT, 632014, Vellore, India.
Ramaiah S; Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), 632014, Vellore, India. .; Department of Bio-Sciences, SBST, VIT, 632014, Vellore, India. .; School of Biosciences and Technology VIT, 632014, Vellore, Tamil Nadu, India. .
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Źródło:
World journal of microbiology & biotechnology [World J Microbiol Biotechnol] 2022 Jul 05; Vol. 38 (9), pp. 153. Date of Electronic Publication: 2022 Jul 05.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Anti-Bacterial Agents*/pharmacology
Systems Biology*
Computational Biology ; Drug Resistance, Bacterial/genetics ; Genomics
Czasopismo naukowe
Tytuł:
Developmental biology is poised to discover altogether new principles in biology in the 21st century.
Autorzy:
Sánchez Alvarado A; Stowers Institute for Medical Research, Howard Hughes Medical Institute, Kansas City, MO, United States. Electronic address: .
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Źródło:
Developmental biology [Dev Biol] 2022 Aug; Vol. 488, pp. 47-53. Date of Electronic Publication: 2022 May 14.
Typ publikacji:
Historical Article; Journal Article
MeSH Terms:
Biology*
Gene Editing*
Developmental Biology ; History, 21st Century
Czasopismo naukowe
Tytuł:
Generative models of morphogenesis in developmental biology.
Autorzy:
Stillman NR; Department of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6BT, UK. Electronic address: .
Mayor R; Department of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6BT, UK; Center for Integrative Biology, Faculty of Sciences, Universidad Mayor; Santiago, Chile Santiago, Chile.. Electronic address: .
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Źródło:
Seminars in cell & developmental biology [Semin Cell Dev Biol] 2023 Sep 30; Vol. 147, pp. 83-90. Date of Electronic Publication: 2023 Feb 06.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Models, Biological*
Morphogenesis*
Developmental Biology*/methods
Developmental Biology*/trends
Computer Simulation*/trends
Cell Movement ; Machine Learning ; Humans ; Animals
Czasopismo naukowe
Tytuł:
Enabling technology and core theory of synthetic biology.
Autorzy:
Zhang XE; Faculty of Synthetic Biology, Shenzhen Institute of Advanced Technology, Shenzhen, 518055, China. .; National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China. .
Liu C; Faculty of Synthetic Biology, Shenzhen Institute of Advanced Technology, Shenzhen, 518055, China. .; Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China. .
Dai J; Faculty of Synthetic Biology, Shenzhen Institute of Advanced Technology, Shenzhen, 518055, China. .; Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China. .
Yuan Y; Frontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China. .
Gao C; State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China. .
Feng Y; State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai, 200240, China. .
Wu B; State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China. .
Wei P; Faculty of Synthetic Biology, Shenzhen Institute of Advanced Technology, Shenzhen, 518055, China. .; Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China. .
You C; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China. you_.
Wang X; Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing, 100084, China. .
Si T; Faculty of Synthetic Biology, Shenzhen Institute of Advanced Technology, Shenzhen, 518055, China. .; Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China. .
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Źródło:
Science China. Life sciences [Sci China Life Sci] 2023 Aug; Vol. 66 (8), pp. 1742-1785. Date of Electronic Publication: 2023 Feb 06.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Synthetic Biology*
Artificial Intelligence*
Biotechnology ; Gene Editing ; Genome
Czasopismo naukowe

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