Temat: "Chromatin" - OpacWWW

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Chromatin.

Scientists have known for many years that the hereditary information within plants and other organisms is encrypted in molecules of deoxyribonucleic acid (DNA) that are themselves organized into discrete hereditary units called genes and that these genes are organized into larger subcellular structures called chromosomes. James Watson and Francis Crick elucidated the basic chemical structure of the DNA molecule in 1952, and much has been learned since that time concerning its replication and... więcej

Salem Press Encyclopedia of Science, 2021. 2p.

Skocz do pozycji: 1 1.

Tytuł :: CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes.
Autorzy :: Polit L; Institut Cochin, Inserm U1016, CNRS UMR 8104, Paris Descartes University UMR-S1016, 75014, Paris, France.
Kerdivel G; Institut Cochin, Inserm U1016, CNRS UMR 8104, Paris Descartes University UMR-S1016, 75014, Paris, France.
Gregoricchio S; INSERM UMR1170, Equipe Labellisée Ligue Nationale Contre Le Cancer, Gustave Roussy, Paris-Saclay University, 94800, Villejuif, France.
Esposito M; INSERM UMR1170, Equipe Labellisée Ligue Nationale Contre Le Cancer, Gustave Roussy, Paris-Saclay University, 94800, Villejuif, France.
Guillouf C; INSERM UMR1170, Equipe Labellisée Ligue Nationale Contre Le Cancer, Gustave Roussy, Paris-Saclay University, 94800, Villejuif, France.
Boeva V; Institut Cochin, Inserm U1016, CNRS UMR 8104, Paris Descartes University UMR-S1016, 75014, Paris, France. .; Department of Computer Science, Institute for Machine Learning, ETH Zurich, 8092, Zurich, Switzerland. .; Swiss Institute for Bioinformatics (SIB), Zürich, Switzerland. .; Pokaż więcej
Źródło :: BMC bioinformatics [BMC Bioinformatics] 2021 Aug 17; Vol. 22 (1), pp. 407. Date of Electronic Publication: 2021 Aug 17.
Typ publikacji :: Journal Article
MeSH Terms :: Chromatin*
Chromatin Immunoprecipitation Sequencing*
Chromatin Immunoprecipitation ; Protein Binding ; Sequence Analysis, DNA
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 2 2.

Tytuł :: BANP opens chromatin and activates CpG-island-regulated genes.
Autorzy :: Grand RS; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Burger L; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.; Swiss Institute of Bioinformatics, Basel, Switzerland.
Gräwe C; Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands.
Michael AK; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Isbel L; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia.
Hess D; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Hoerner L; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Iesmantavicius V; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Durdu S; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Pregnolato M; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.; Faculty of Science, University of Basel, Basel, Switzerland.
Krebs AR; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Smallwood SA; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Thomä N; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Vermeulen M; Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands.
Schübeler D; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland. .; Faculty of Science, University of Basel, Basel, Switzerland. .; Pokaż więcej
Źródło :: Nature [Nature] 2021 Aug; Vol. 596 (7870), pp. 133-137. Date of Electronic Publication: 2021 Jul 07.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Chromatin Assembly and Disassembly*/genetics
Cell Cycle Proteins/*metabolism
Chromatin/*genetics
Chromatin/*metabolism
CpG Islands/*genetics
DNA-Binding Proteins/*metabolism
Nuclear Proteins/*metabolism
Animals ; Base Sequence ; Cell Line, Tumor ; Chromatin/chemistry ; DNA Methylation ; Gene Expression Regulation ; Genes, Essential ; Humans ; Mice ; Single Molecule Imaging
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 3 3.

Tytuł :: Structure and Function of Chromatin Remodelers.
Autorzy :: Reyes AA; Department of Molecular Biosciences, Northwestern University, 2205 Tech Drive, Evanston, IL 60208-3500, USA; Interdisciplinary Biological Sciences Program, Northwestern University, 2205 Tech Drive, Evanston, IL 60208-3500, USA. Electronic address: .
Marcum RD; Department of Molecular Biosciences, Northwestern University, 2205 Tech Drive, Evanston, IL 60208-3500, USA. Electronic address: .
He Y; Department of Molecular Biosciences, Northwestern University, 2205 Tech Drive, Evanston, IL 60208-3500, USA; Interdisciplinary Biological Sciences Program, Northwestern University, 2205 Tech Drive, Evanston, IL 60208-3500, USA; Robert H. Lurie Comprehensive Cancer Center of Northwestern University, Northwestern University, 676 N. St. Clair, Chicago, IL 60611, USA; Chemistry of Life Processes Institute, Northwestern University, Evanston, IL, USA. Electronic address: .; Pokaż więcej
Źródło :: Journal of molecular biology [J Mol Biol] 2021 Jul 09; Vol. 433 (14), pp. 166929. Date of Electronic Publication: 2021 Mar 10.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Review
MeSH Terms :: Chromatin Assembly and Disassembly*
Chromatin/*genetics
Chromatin/chemistry ; Chromatin/metabolism ; Gene Expression Regulation ; Humans ; Nucleosomes/metabolism ; Structure-Activity Relationship ; Yeasts
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 4 4.

Tytuł :: Transcriptional Profiling of Cardiac Cells Links Age-Dependent Changes in Acetyl-CoA Signaling to Chromatin Modifications.
Autorzy :: Kurian J; Center for Metabolic Disease Research (CMDR), LKSOM, Temple University, Philadelphia, PA 19140, USA.
Bohl V; Center for Metabolic Disease Research (CMDR), LKSOM, Temple University, Philadelphia, PA 19140, USA.
Behanan M; Center for Metabolic Disease Research (CMDR), LKSOM, Temple University, Philadelphia, PA 19140, USA.
Mohsin S; Cardiovascular Research Center (CVRC), LKSOM, Temple University, Philadelphia, PA 19140, USA.
Khan M; Center for Metabolic Disease Research (CMDR), LKSOM, Temple University, Philadelphia, PA 19140, USA.; Department of Physiology, LKSOM, Temple University, Philadelphia, PA 19140, USA.; Pokaż więcej
Źródło :: International journal of molecular sciences [Int J Mol Sci] 2021 Jun 29; Vol. 22 (13). Date of Electronic Publication: 2021 Jun 29.
Typ publikacji :: Journal Article
MeSH Terms :: Chromatin Assembly and Disassembly*
Gene Expression Profiling*
Gene Expression Regulation*
Signal Transduction*
Transcriptome*
Acetyl Coenzyme A/*metabolism
Myocytes, Cardiac/*metabolism
Chromatin/genetics ; Chromatin/metabolism ; Cluster Analysis ; Computational Biology/methods ; Gene Regulatory Networks ; Histones/metabolism ; Humans ; Protein Processing, Post-Translational ; Stem Cells/cytology ; Stem Cells/metabolism
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 5 5.

Tytuł :: Chromatin Immunoprecipitation and Sequencing (ChIP-seq) Optimized for Application in Caenorhabditis elegans.
Autorzy :: Sen I; Department of Medicine, Integrated Cardio Metabolic Centre (ICMC), Karolinska Institute, Huddinge, Sweden.; Department of Biosciences and Nutrition, Karolinska Institute, Huddinge, Sweden.
Kavšek A; Department of Medicine, Integrated Cardio Metabolic Centre (ICMC), Karolinska Institute, Huddinge, Sweden.; Department of Biosciences and Nutrition, Karolinska Institute, Huddinge, Sweden.
Riedel CG; Department of Medicine, Integrated Cardio Metabolic Centre (ICMC), Karolinska Institute, Huddinge, Sweden.; Department of Biosciences and Nutrition, Karolinska Institute, Huddinge, Sweden.; Pokaż więcej
Źródło :: Current protocols [Curr Protoc] 2021 Jul; Vol. 1 (7), pp. e187.
Typ publikacji :: Journal Article
MeSH Terms :: Caenorhabditis elegans*/genetics
Chromatin Immunoprecipitation Sequencing*
Animals ; Chromatin Immunoprecipitation ; High-Throughput Nucleotide Sequencing ; Reproducibility of Results
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 6 6.

Tytuł :: The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.
Autorzy :: Bayona-Feliu A; Centro Andaluz de Biología Molecular y Medicina Regenerativa CABIMER, Universidad de Sevilla-CSIC-Universidad Pablo de Olavide, Seville, Spain.; Departamento de Genética, Facultad de Biología, Universidad de Sevilla, Seville, Spain.
Barroso S; Centro Andaluz de Biología Molecular y Medicina Regenerativa CABIMER, Universidad de Sevilla-CSIC-Universidad Pablo de Olavide, Seville, Spain.
Muñoz S; Centro Andaluz de Biología Molecular y Medicina Regenerativa CABIMER, Universidad de Sevilla-CSIC-Universidad Pablo de Olavide, Seville, Spain.
Aguilera A; Centro Andaluz de Biología Molecular y Medicina Regenerativa CABIMER, Universidad de Sevilla-CSIC-Universidad Pablo de Olavide, Seville, Spain. .; Departamento de Genética, Facultad de Biología, Universidad de Sevilla, Seville, Spain. .; Pokaż więcej
Źródło :: Nature genetics [Nat Genet] 2021 Jul; Vol. 53 (7), pp. 1050-1063. Date of Electronic Publication: 2021 May 13.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Chromatin Assembly and Disassembly*
DNA Replication*
R-Loop Structures*
Transcription, Genetic*
Chromosomal Proteins, Non-Histone/*metabolism
Transcription Factors/*metabolism
Adenosine Triphosphatases/metabolism ; Chromatin/genetics ; Chromatin/metabolism ; Fanconi Anemia Complementation Group D2 Protein/genetics ; Fanconi Anemia Complementation Group D2 Protein/metabolism ; Genetic Loci ; Genomic Instability ; Humans
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 7 7.

Tytuł :: Nucleosome-induced homology recognition in chromatin.
Autorzy :: Hedley JG; Department of Chemistry, Faculty of Natural Sciences, Imperial College London, Molecular Sciences Research Hub, White City Campus, Wood Lane, London W12 0BZ, UK.
Teif VB; School of Life Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK.
Kornyshev AA; Department of Chemistry, Faculty of Natural Sciences, Imperial College London, Molecular Sciences Research Hub, White City Campus, Wood Lane, London W12 0BZ, UK.; Pokaż więcej
Źródło :: Journal of the Royal Society, Interface [J R Soc Interface] 2021 Jun; Vol. 18 (179), pp. 20210147. Date of Electronic Publication: 2021 Jun 16.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Chromatin*
Nucleosomes*
Chromatin Assembly and Disassembly ; DNA ; Histones/metabolism
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 8 8.

Tytuł :: Stretch-Induced Tenomodulin Expression Promotes Tenocyte Migration via F-Actin and Chromatin Remodeling.
Autorzy :: Xu P; Key Laboratory of Biorheological Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing 400044, China.
Deng B; Key Laboratory of Biorheological Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing 400044, China.
Zhang B; Chongqing Engineering Research Center of Medical Electronics and Information Technology, College of Bioinformatics, Chongqing University of Posts and Telecommunications, Chongqing 400065, China.
Luo Q; Key Laboratory of Biorheological Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing 400044, China.
Song G; Key Laboratory of Biorheological Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing 400044, China.; Pokaż więcej
Źródło :: International journal of molecular sciences [Int J Mol Sci] 2021 May 06; Vol. 22 (9). Date of Electronic Publication: 2021 May 06.
Typ publikacji :: Journal Article
MeSH Terms :: Cell Movement*
Chromatin Assembly and Disassembly*
Stress, Mechanical*
Actins/*metabolism
Membrane Proteins/*metabolism
Tenocytes/*cytology
Tenocytes/*metabolism
Animals ; Cells, Cultured ; Chromatin/metabolism ; Membrane Proteins/genetics ; Rats, Sprague-Dawley ; Stress Fibers/metabolism ; Up-Regulation/genetics
: Czasopismo naukowe

Szczegóły Pełny tekst

Skocz do pozycji: 9 9.

Tytuł :: Stromal induction of BRD4 phosphorylation Results in Chromatin Remodeling and BET inhibitor Resistance in Colorectal Cancer.
Autorzy :: Wang W; Guangdong Provincial Key laboratory of Colorectal and Pelvic Floor Disease, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China. .; Guangdong Institute of Gastroenterology, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China. .; Cancer Precision Medicine, Genome Institute of Singapore, Agency for Science, Technology, and Research, Singapore, 138672, Singapore. .
Tang YA; Cancer Precision Medicine, Genome Institute of Singapore, Agency for Science, Technology, and Research, Singapore, 138672, Singapore.; Institute of Molecular Medicine, College of Medicine, National Cheng Kung University, Tainan, 70101, Taiwan.
Xiao Q; Guangdong Provincial Key laboratory of Colorectal and Pelvic Floor Disease, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.; Guangdong Institute of Gastroenterology, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.
Lee WC; Cancer Precision Medicine, Genome Institute of Singapore, Agency for Science, Technology, and Research, Singapore, 138672, Singapore.
Cheng B; Guangdong Provincial Key laboratory of Colorectal and Pelvic Floor Disease, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.; Guangdong Institute of Gastroenterology, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.
Niu Z; Guangdong Provincial Key laboratory of Colorectal and Pelvic Floor Disease, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.; Guangdong Institute of Gastroenterology, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.
Oguz G; Cancer Precision Medicine, Genome Institute of Singapore, Agency for Science, Technology, and Research, Singapore, 138672, Singapore.
Feng M; Cancer Precision Medicine, Genome Institute of Singapore, Agency for Science, Technology, and Research, Singapore, 138672, Singapore.
Lee PL; Cancer Precision Medicine, Genome Institute of Singapore, Agency for Science, Technology, and Research, Singapore, 138672, Singapore.
Li B; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, 200240, China.
Yang ZH; Guangdong Provincial Key laboratory of Colorectal and Pelvic Floor Disease, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.; Guangdong Institute of Gastroenterology, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.
Chen YF; Guangdong Provincial Key laboratory of Colorectal and Pelvic Floor Disease, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.; Guangdong Institute of Gastroenterology, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.; Department of Colorectal Surgery, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510655, China.
Lan P; Guangdong Provincial Key laboratory of Colorectal and Pelvic Floor Disease, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.; Guangdong Institute of Gastroenterology, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China.; Department of Colorectal Surgery, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510655, China.
Wu XJ; Guangdong Provincial Key laboratory of Colorectal and Pelvic Floor Disease, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China. .; Guangdong Institute of Gastroenterology, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, 510655, China. .; Department of Colorectal Surgery, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510655, China. .
Yu Q; Cancer Precision Medicine, Genome Institute of Singapore, Agency for Science, Technology, and Research, Singapore, 138672, Singapore. .; Department of Physiology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 117597, Singapore. .; Cancer and Stem Cell Biology, DUKE-NUS Graduate Medical School of Singapore, Singapore, 169857, Singapore. .; Pokaż więcej
Źródło :: Nature communications [Nat Commun] 2021 Jul 21; Vol. 12 (1), pp. 4441. Date of Electronic Publication: 2021 Jul 21.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Chromatin Assembly and Disassembly*
Drug Resistance, Neoplasm*
Cell Cycle Proteins/*metabolism
Colorectal Neoplasms/*metabolism
Transcription Factors/*metabolism
Antineoplastic Agents/metabolism ; Antineoplastic Agents/pharmacology ; Cancer-Associated Fibroblasts/metabolism ; Cell Cycle Proteins/antagonists & inhibitors ; Chromatin/metabolism ; Colorectal Neoplasms/pathology ; Gene Expression Regulation, Neoplastic/drug effects ; Humans ; Interleukin-6/metabolism ; Interleukin-8/metabolism ; Janus Kinase 2/metabolism ; Phosphorylation ; Protein Domains ; STAT3 Transcription Factor/metabolism ; Signal Transduction ; Transcription Factors/antagonists & inhibitors ; Tumor Microenvironment ; Ubiquitin Thiolesterase/metabolism
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 10 10.

Tytuł :: Chromatin context affects DNA repair pathway.
Autorzy :: Barranco C; Nature Reviews Genetics, . .; Pokaż więcej
Źródło :: Nature reviews. Genetics [Nat Rev Genet] 2021 Jul; Vol. 22 (7), pp. 414.
Typ publikacji :: Journal Article; Comment
MeSH Terms :: Chromatin*/genetics
DNA Repair*/genetics
Chromatin Assembly and Disassembly/genetics
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 11 11.

Tytuł :: UniBind: maps of high-confidence direct TF-DNA interactions across nine species.
Autorzy :: Puig RR; Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, 0349, Oslo, Norway.
Boddie P; Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, 0349, Oslo, Norway.
Khan A; Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, 0349, Oslo, Norway.; Stanford Cancer Institute, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Castro-Mondragon JA; Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, 0349, Oslo, Norway.
Mathelier A; Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, 0349, Oslo, Norway. .; Department of Medical Genetics, Oslo University Hospital, Oslo, 0424, Norway. .; Pokaż więcej
Źródło :: BMC genomics [BMC Genomics] 2021 Jun 26; Vol. 22 (1), pp. 482. Date of Electronic Publication: 2021 Jun 26.
Typ publikacji :: Journal Article
MeSH Terms :: Chromatin Immunoprecipitation Sequencing*
DNA*/metabolism
Binding Sites ; Chromatin Immunoprecipitation ; Computational Biology ; Protein Binding
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 12 12.

Tytuł :: Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas.
Autorzy :: Stępniak K; Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland.
Machnicka MA; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland.
Mieczkowski J; Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland.; Medical University of Gdansk, International Research Agenda 3P Medicine Laboratory, Gdansk, Poland.
Macioszek A; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland.
Wojtaś B; Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland.
Gielniewski B; Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland.
Poleszak K; Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland.
Perycz M; Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland.
Król SK; Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland.
Guzik R; Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland.
Dąbrowski MJ; Institute of Computer Science of the Polish Academy of Sciences, Warsaw, Poland.
Dramiński M; Institute of Computer Science of the Polish Academy of Sciences, Warsaw, Poland.
Jardanowska M; Institute of Computer Science of the Polish Academy of Sciences, Warsaw, Poland.
Grabowicz I; Institute of Computer Science of the Polish Academy of Sciences, Warsaw, Poland.
Dziedzic A; Institute of Computer Science of the Polish Academy of Sciences, Warsaw, Poland.
Kranas H; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland.; Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Sienkiewicz K; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland.
Diamanti K; Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Kotulska K; Departments of Neurology, Neurosurgery, Neuropathology, The Children's Memorial Health Institute, Warsaw, Poland.
Grajkowska W; Departments of Neurology, Neurosurgery, Neuropathology, The Children's Memorial Health Institute, Warsaw, Poland.
Roszkowski M; Departments of Neurology, Neurosurgery, Neuropathology, The Children's Memorial Health Institute, Warsaw, Poland.
Czernicki T; Department of Neurosurgery, Medical University of Warsaw, Warsaw, Poland.
Marchel A; Department of Neurosurgery, Medical University of Warsaw, Warsaw, Poland.
Komorowski J; Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Kaminska B; Nencki Institute of Experimental Biology of the Polish Academy of Sciences, Warsaw, Poland. .
Wilczyński B; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland. .; Pokaż więcej
Źródło :: Nature communications [Nat Commun] 2021 Jun 15; Vol. 12 (1), pp. 3621. Date of Electronic Publication: 2021 Jun 15.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Chromatin*
Regulatory Sequences, Nucleic Acid*
Glioma/*genetics
Binding Sites ; Brain Neoplasms/genetics ; Chromatin Immunoprecipitation ; DNA/metabolism ; DNA Methylation ; DNA-Binding Proteins/metabolism ; Enhancer of Zeste Homolog 2 Protein ; Epigenesis, Genetic ; Epigenomics ; Forkhead Box Protein M1 ; Gene Expression ; Gene Expression Profiling ; Gene Expression Regulation, Neoplastic ; Glioblastoma ; Histone Code ; Histones ; Humans ; Promoter Regions, Genetic ; Transcription Factors/metabolism
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 13 13.

Tytuł :: Increased peak detection accuracy in over-dispersed ChIP-seq data with supervised segmentation models.
Autorzy :: Liehrmann A; Institut des Sciences des Plantes de Paris-Saclay (IPS2), Université Paris-Saclay, Université Evry, CNRS, INRAE, 91405, Orsay, France. .; Laboratoire de Mathématiques et Modélisation d'Evry (LAMME), Université Paris-Saclay, Université Evry, CNRS, 91037, Evry, France. .
Rigaill G; Institut des Sciences des Plantes de Paris-Saclay (IPS2), Université Paris-Saclay, Université Evry, CNRS, INRAE, 91405, Orsay, France.; Laboratoire de Mathématiques et Modélisation d'Evry (LAMME), Université Paris-Saclay, Université Evry, CNRS, 91037, Evry, France.
Hocking TD; School of Informatics, Computing, and Cyber Systems (SICCS), Northern Arizona University, 86011, Flagstaff, AZ, USA.; Pokaż więcej
Źródło :: BMC bioinformatics [BMC Bioinformatics] 2021 Jun 14; Vol. 22 (1), pp. 323. Date of Electronic Publication: 2021 Jun 14.
Typ publikacji :: Journal Article
MeSH Terms :: Chromatin Immunoprecipitation Sequencing*
High-Throughput Nucleotide Sequencing*
Algorithms ; Chromatin Immunoprecipitation ; Sequence Analysis, DNA
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 14 14.

Tytuł :: Fast detection of differential chromatin domains with SCIDDO.
Autorzy :: Ebert P; Institute for Medical Biometry and Bioinformatics, Heinrich Heine University, 40225 Düsseldorf, Germany.; Max Planck Institute for Informatics, Saarland Informatics Campus, 66123 Saarbrücken, Germany.
Schulz MH; Max Planck Institute for Informatics, Saarland Informatics Campus, 66123 Saarbrücken, Germany.; Cluster of Excellence on Multimodal Computing and Interaction, Saarland Informatics Campus, 66123 Saarbrücken, Germany.; Institute for Cardiovascular Regeneration, Goethe University, 60590 Frankfurt am Main, Germany.; German Center for Cardiovascular Research (DZHK), Partner site Rhein-Main, 60590 Frankfurt am Main, Germany.; Pokaż więcej
Źródło :: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Jun 09; Vol. 37 (9), pp. 1198-1205.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Chromatin*
Chromosomes*
Chromatin Immunoprecipitation ; Genome ; Histone Code
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 15 15.

Tytuł :: Impact of DNA methylation on 3D genome structure.
Autorzy :: Buitrago D; Institute for Research in Biomedicine (IRB Barcelona) - The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain.; Departamento de Física y Matemáticas, Universidad Autónoma de Manizales, Manizales, Colombia.
Labrador M; Institute for Research in Biomedicine (IRB Barcelona) - The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain.
Arcon JP; Institute for Research in Biomedicine (IRB Barcelona) - The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain.
Lema R; Institute for Research in Biomedicine (IRB Barcelona) - The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain.
Flores O; Institute for Research in Biomedicine (IRB Barcelona) - The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain.
Esteve-Codina A; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
Blanc J; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
Villegas N; Institute for Research in Biomedicine (IRB Barcelona) - The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain.
Bellido D; Centres Cientifics i Tecnologics, Universitat de Barcelona, Barcelona, Spain.
Gut M; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
Dans PD; Institute for Research in Biomedicine (IRB Barcelona) - The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain.; Department of Biological Sciences, CENUR North Coast. University of the Republic, Salto, Uruguay.
Heath SC; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
Gut IG; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
Brun Heath I; Institute for Research in Biomedicine (IRB Barcelona) - The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain. .; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain. .
Orozco M; Institute for Research in Biomedicine (IRB Barcelona) - The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain. .; Joint IRB-BSC Program in Computational Biology, Barcelona, Spain. .; Departament de Bioquímica i Biomedicina, Universitat de Barcelona, Barcelona, Spain. .; Pokaż więcej
Źródło :: Nature communications [Nat Commun] 2021 May 28; Vol. 12 (1), pp. 3243. Date of Electronic Publication: 2021 May 28.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Chromatin Assembly and Disassembly*
DNA Methylation*
Epigenesis, Genetic*
Nucleosomes/*metabolism
Saccharomyces cerevisiae/*genetics
5' Untranslated Regions/genetics ; Centromere/metabolism ; Chromatin/metabolism ; DNA (Cytosine-5-)-Methyltransferase 1/genetics ; DNA (Cytosine-5-)-Methyltransferase 1/metabolism ; DNA (Cytosine-5-)-Methyltransferases/genetics ; DNA (Cytosine-5-)-Methyltransferases/metabolism ; Genome, Fungal ; Histones/genetics ; Histones/metabolism ; Intravital Microscopy ; Mutagenesis, Site-Directed ; Mutation ; Nucleosomes/genetics ; RNA-Seq ; Recombinant Proteins/genetics ; Recombinant Proteins/isolation & purification ; Recombinant Proteins/metabolism ; Repressor Proteins/genetics ; Repressor Proteins/isolation & purification ; Repressor Proteins/metabolism ; Saccharomyces cerevisiae Proteins/genetics ; Saccharomyces cerevisiae Proteins/isolation & purification ; Saccharomyces cerevisiae Proteins/metabolism ; Whole Genome Sequencing
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 16 16.

Tytuł :: NoPeak: k-mer-based motif discovery in ChIP-Seq data without peak calling.
Autorzy :: Menzel M; MNI, Technische Hochschule Mittelhessen, University of Applied Sciences, Giessen 35390, Germany.
Hurka S; Institute for Insect Biotechnology, Justus Liebig University, Giessen 35392, Germany.
Glasenhardt S; MNI, Technische Hochschule Mittelhessen, University of Applied Sciences, Giessen 35390, Germany.
Gogol-Döring A; MNI, Technische Hochschule Mittelhessen, University of Applied Sciences, Giessen 35390, Germany.; Pokaż więcej
Źródło :: Bioinformatics (Oxford, England) [Bioinformatics] 2021 May 05; Vol. 37 (5), pp. 596-602.
Typ publikacji :: Journal Article
MeSH Terms :: Chromatin Immunoprecipitation Sequencing*
High-Throughput Nucleotide Sequencing*
Binding Sites ; Chromatin Immunoprecipitation ; Sequence Analysis, DNA
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 17 17.

Tytuł :: Spatial Organization of Chromatin: Transcriptional Control of Adaptive Immune Cell Development.
Autorzy :: Pongubala JMR; Department of Animal Biology, University of Hyderabad, Hyderabad, India.
Murre C; Division of Biological Sciences, University of California, San Diego, La Jolla, CA, United States.; Pokaż więcej
Źródło :: Frontiers in immunology [Front Immunol] 2021 Mar 29; Vol. 12, pp. 633825. Date of Electronic Publication: 2021 Mar 29 (Print Publication: 2021).
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review
MeSH Terms :: Adaptive Immunity*/genetics
Chromatin Assembly and Disassembly*
Transcription, Genetic*
B-Lymphocytes/*metabolism
Chromatin/*metabolism
T-Lymphocytes/*metabolism
Animals ; B-Lymphocytes/immunology ; Chromatin/genetics ; Chromatin/immunology ; Humans ; Nucleic Acid Conformation ; Protein Conformation ; T-Lymphocytes/immunology
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 18 18.

Tytuł :: The emerging role of chromatin remodelers in neurodevelopmental disorders: a developmental perspective.
Autorzy :: Mossink B; Department of Human Genetics, Radboudumc, Donders Institute for Brain, Cognition and Behaviour, Geert Grooteplein 10, P.O. Box 9101, 6500 HB, Nijmegen, The Netherlands.; Department of Cognitive Neuroscience, Radboudumc, Donders Institute for Brain, Cognition and Behaviour, 6500 HB, Nijmegen, The Netherlands.
Negwer M; Department of Human Genetics, Radboudumc, Donders Institute for Brain, Cognition and Behaviour, Geert Grooteplein 10, P.O. Box 9101, 6500 HB, Nijmegen, The Netherlands.; Department of Cognitive Neuroscience, Radboudumc, Donders Institute for Brain, Cognition and Behaviour, 6500 HB, Nijmegen, The Netherlands.
Schubert D; Department of Cognitive Neuroscience, Radboudumc, Donders Institute for Brain, Cognition and Behaviour, 6500 HB, Nijmegen, The Netherlands.
Nadif Kasri N; Department of Human Genetics, Radboudumc, Donders Institute for Brain, Cognition and Behaviour, Geert Grooteplein 10, P.O. Box 9101, 6500 HB, Nijmegen, The Netherlands. .; Department of Cognitive Neuroscience, Radboudumc, Donders Institute for Brain, Cognition and Behaviour, 6500 HB, Nijmegen, The Netherlands. .; Pokaż więcej
Źródło :: Cellular and molecular life sciences : CMLS [Cell Mol Life Sci] 2021 Mar; Vol. 78 (6), pp. 2517-2563. Date of Electronic Publication: 2020 Dec 02.
Typ publikacji :: Journal Article; Review
MeSH Terms :: Chromatin Assembly and Disassembly*
Chromatin/*metabolism
Neurodevelopmental Disorders/*pathology
Animals ; Chromatin/chemistry ; DNA Helicases/genetics ; DNA Helicases/metabolism ; Epigenesis, Genetic ; Histones/genetics ; Histones/metabolism ; Humans ; Neurodevelopmental Disorders/metabolism ; Neurons/metabolism ; Protein Processing, Post-Translational/genetics
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 19 19.

Tytuł :: SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data.
Autorzy :: Yu M; State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China.; Ludwig Institute for Cancer Research, La Jolla, CA, USA.
Abnousi A; Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA.
Zhang Y; Ludwig Institute for Cancer Research, La Jolla, CA, USA.
Li G; Ludwig Institute for Cancer Research, La Jolla, CA, USA.
Lee L; Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA.
Chen Z; State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China.
Fang R; Ludwig Institute for Cancer Research, La Jolla, CA, USA.; Howard Hughes Medical Institute, Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
Lagler TM; Department of Biostatistics, University of North Carolina, Chapel Hill, NC, USA.
Yang Y; Department of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC, USA.; McAllister Heart Institute, University of North Carolina, Chapel Hill, NC, USA.
Wen J; Department of Genetics, University of North Carolina, Chapel Hill, NC, USA.
Sun Q; Department of Biostatistics, University of North Carolina, Chapel Hill, NC, USA.
Li Y; Department of Biostatistics, University of North Carolina, Chapel Hill, NC, USA.; Department of Genetics, University of North Carolina, Chapel Hill, NC, USA.; Department of Computer Science, University of North Carolina, Chapel Hill, NC, USA.
Ren B; Ludwig Institute for Cancer Research, La Jolla, CA, USA. .; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA. .
Hu M; Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA. .; Pokaż więcej
Źródło :: Nature methods [Nat Methods] 2021 Sep; Vol. 18 (9), pp. 1056-1059. Date of Electronic Publication: 2021 Aug 26.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :: Chromatin/*chemistry
Computational Biology/*methods
Single-Cell Analysis/*methods
Algorithms ; Animals ; Chromatin/genetics ; Chromatin Immunoprecipitation Sequencing ; Data Visualization ; Databases, Factual ; Gene Expression ; Humans ; Mental Disorders/genetics ; Mice ; Mouse Embryonic Stem Cells/cytology ; Mouse Embryonic Stem Cells/physiology ; Polymorphism, Single Nucleotide ; Prefrontal Cortex/cytology ; Reproducibility of Results ; Sequence Analysis, DNA/methods
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 20 20.

Tytuł :: CTCF and transcription influence chromatin structure re-configuration after mitosis.
Autorzy :: Zhang H; Institute of Molecular Physiology, Shenzhen Bay Laboratory, Shenzhen, Guangdong, China. .; Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA. .
Lam J; Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Zhang D; Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Lan Y; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Vermunt MW; Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Keller CA; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.
Giardine B; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.
Hardison RC; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.
Blobel GA; Division of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA. .; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. .; Pokaż więcej
Źródło :: Nature communications [Nat Commun] 2021 Aug 27; Vol. 12 (1), pp. 5157. Date of Electronic Publication: 2021 Aug 27.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :: Mitosis*
Transcription, Genetic*
CCCTC-Binding Factor/*metabolism
Chromatin/*metabolism
Animals ; CCCTC-Binding Factor/genetics ; Cell Division ; Cell Line ; Chromatin/genetics ; Chromatin Assembly and Disassembly ; Enhancer Elements, Genetic ; Mice ; Promoter Regions, Genetic
: Czasopismo naukowe

Szczegóły

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