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Tytuł:
Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C.
Autorzy:
Lee BH; Department of Biochemistry and Molecular Medicine and the Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90089, USA.
Wu Z; Department of Biochemistry and Molecular Medicine and the Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90089, USA.
Rhie SK; Department of Biochemistry and Molecular Medicine and the Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90089, USA. .
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Źródło:
Epigenetics & chromatin [Epigenetics Chromatin] 2022 Dec 21; Vol. 15 (1), pp. 41. Date of Electronic Publication: 2022 Dec 21.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Assembly and Disassembly*/genetics
Chromatin Assembly and Disassembly*/physiology
Nucleosomes*/genetics
Regulatory Sequences, Nucleic Acid*/genetics
Humans ; Chromatin/genetics ; Enhancer Elements, Genetic ; Promoter Regions, Genetic
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype.
Autorzy:
Shah PP; Departments of Medicine and Cell and Developmental Biology, Penn CVI, Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Smilow TRC, 3400 Civic Center Blvd, Philadelphia, PA, 19104, USA.
Keough KC; University of California, San Francisco, CA, 94117, USA.; Gladstone Institute of Data Science and Biotechnology, 1650 Owens Street, San Francisco, CA, 94158, USA.
Gjoni K; University of California, San Francisco, CA, 94117, USA.; Gladstone Institute of Data Science and Biotechnology, 1650 Owens Street, San Francisco, CA, 94158, USA.
Santini GT; Departments of Medicine and Cell and Developmental Biology, Penn CVI, Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Smilow TRC, 3400 Civic Center Blvd, Philadelphia, PA, 19104, USA.
Abdill RJ; Departments of Medicine and Cell and Developmental Biology, Penn CVI, Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Smilow TRC, 3400 Civic Center Blvd, Philadelphia, PA, 19104, USA.
Wickramasinghe NM; Department of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Dundes CE; Department of Developmental Biology and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Karnay A; Departments of Medicine and Cell and Developmental Biology, Penn CVI, Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Smilow TRC, 3400 Civic Center Blvd, Philadelphia, PA, 19104, USA.
Chen A; Department of Developmental Biology and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Salomon REA; Department of Developmental Biology and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Walsh PJ; Department of Genetics, Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Nguyen SC; Department of Genetics, Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Whalen S; Gladstone Institute of Data Science and Biotechnology, 1650 Owens Street, San Francisco, CA, 94158, USA.
Joyce EF; Department of Genetics, Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Loh KM; Department of Developmental Biology and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Dubois N; Department of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Pollard KS; University of California, San Francisco, CA, 94117, USA. .; Gladstone Institute of Data Science and Biotechnology, 1650 Owens Street, San Francisco, CA, 94158, USA. .; Chan Zuckerberg Biohub, San Francisco, CA, 94158, USA. .
Jain R; Departments of Medicine and Cell and Developmental Biology, Penn CVI, Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Smilow TRC, 3400 Civic Center Blvd, Philadelphia, PA, 19104, USA. .; Smilow TRC, 3400 Civic Center Blvd, Philadelphia, PA, 19104, USA. .
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Źródło:
Genome biology [Genome Biol] 2023 Jan 23; Vol. 24 (1), pp. 16. Date of Electronic Publication: 2023 Jan 23.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/metabolism
Nuclear Lamina*/genetics
Humans ; Cell Nucleus/genetics ; Chromatin Assembly and Disassembly ; Cell Differentiation
Czasopismo naukowe
Szczegóły
Tytuł:
Direct assessment of histone function using histone replacement.
Autorzy:
Corcoran ET; Yale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CT 06511, USA.
Jacob Y; Yale University, Department of Molecular, Cellular and Developmental Biology, Faculty of Arts and Sciences, 260 Whitney Avenue, New Haven, CT 06511, USA. Electronic address: .
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Źródło:
Trends in biochemical sciences [Trends Biochem Sci] 2023 Jan; Vol. 48 (1), pp. 53-70. Date of Electronic Publication: 2022 Jul 16.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Histones*/metabolism
Chromatin*
Chromatin Assembly and Disassembly ; Eukaryotic Cells/metabolism ; DNA Repair
Czasopismo naukowe
Szczegóły
Tytuł:
Switching defective/sucrose non-fermenting chromatin remodeling complex coordinates meiotic gene activation via promoter remodeling and Meiosin activation in female germline.
Autorzy:
Ito T; Laboratory of Stem Cell Biology, Department of Biosciences, Graduate School of Science, School of Science, Kitasato University, Sagamihara, Kanagawa, Japan.; Chitose Laboratory Corp., Biotechnology Research Center, Kawasaki, Kanagawa, Japan.
Ohta M; Laboratory of Stem Cell Biology, Department of Biosciences, Graduate School of Science, School of Science, Kitasato University, Sagamihara, Kanagawa, Japan.
Osada A; Laboratory of Stem Cell Biology, Department of Biosciences, Graduate School of Science, School of Science, Kitasato University, Sagamihara, Kanagawa, Japan.
Nishiyama A; Department of Immunology, Yokohama City University Graduate School of Medicine, Yokohama, Kanagawa, Japan.
Ishiguro KI; Department of Chromosome Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.
Tamura T; Department of Immunology, Yokohama City University Graduate School of Medicine, Yokohama, Kanagawa, Japan.; Advanced Medical Research Center, Yokohama City University, Yokohama, Kanagawa, Japan.
Sekita Y; Laboratory of Stem Cell Biology, Department of Biosciences, Graduate School of Science, School of Science, Kitasato University, Sagamihara, Kanagawa, Japan.
Kimura T; Laboratory of Stem Cell Biology, Department of Biosciences, Graduate School of Science, School of Science, Kitasato University, Sagamihara, Kanagawa, Japan.
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Źródło:
Genes to cells : devoted to molecular & cellular mechanisms [Genes Cells] 2023 Jan; Vol. 28 (1), pp. 15-28. Date of Electronic Publication: 2022 Nov 20.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Assembly and Disassembly*
Chromosomal Proteins, Non-Histone*/genetics
Chromosomal Proteins, Non-Histone*/metabolism
Animals ; Female ; Mice ; Chromatin ; Germ Cells/metabolism ; Mammals/metabolism ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Transcriptional Activation
Czasopismo naukowe
Szczegóły
Tytuł:
Chromatin accessibility: methods, mechanisms, and biological insights.
Autorzy:
Mansisidor AR; Laboratory of Genome Architecture and Dynamics, The Rockefeller University, New York, NY.
Risca VI; Laboratory of Genome Architecture and Dynamics, The Rockefeller University, New York, NY.
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Źródło:
Nucleus (Austin, Tex.) [Nucleus] 2022 Dec; Vol. 13 (1), pp. 236-276.
Typ publikacji:
Review; Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Chromatin*/genetics
Nucleosomes*
Chromatin Assembly and Disassembly ; DNA/genetics ; DNA/chemistry ; DNA Replication
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Chromatin complex dependencies reveal targeting opportunities in leukemia.
Autorzy:
Najm FJ; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
DeWeirdt P; Genetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Moore MM; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Bevill SM; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.; Departments of Cell Biology and Pathology, Harvard Medical School, Boston, MA, USA.
El Farran CA; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.; Departments of Cell Biology and Pathology, Harvard Medical School, Boston, MA, USA.
Macias KA; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.; Departments of Cell Biology and Pathology, Harvard Medical School, Boston, MA, USA.
Hegde M; Genetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Waterbury AL; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
Liau BB; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
van Galen P; Division of Hematology, Brigham and Women's Hospital, Boston, MA, USA.
Doench JG; Genetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Bernstein BE; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA. Bradley_.; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Bradley_.; Departments of Cell Biology and Pathology, Harvard Medical School, Boston, MA, USA. Bradley_.
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Źródło:
Nature communications [Nat Commun] 2023 Jan 27; Vol. 14 (1), pp. 448. Date of Electronic Publication: 2023 Jan 27.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/genetics
Leukemia*/drug therapy
Leukemia*/genetics
Humans ; Mi-2 Nucleosome Remodeling and Deacetylase Complex/metabolism ; Chromatin Assembly and Disassembly ; Histone Acetyltransferases/metabolism
Czasopismo naukowe
Szczegóły
Tytuł:
xcore: an R package for inference of gene expression regulators.
Autorzy:
Migdał M; Laboratory of Zebrafish Developmental Genomics, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.
Arakawa T; RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Takizawa S; RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Furuno M; RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Suzuki H; RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Arner E; RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.; GSK, Gunnels Wood Rd, Stevenage, SG1 2NY, UK.
Winata CL; Laboratory of Zebrafish Developmental Genomics, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland. .
Kaczkowski B; RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan. .; Data Sciences and Quantitative Biology, Discovery Sciences, AstraZeneca R&D, Cambridge, UK. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Jan 11; Vol. 24 (1), pp. 14. Date of Electronic Publication: 2023 Jan 11.
Typ publikacji:
Journal Article
MeSH Terms:
Transcription Factors*/genetics
Transcription Factors*/metabolism
Chromatin Immunoprecipitation Sequencing*
Animals ; Chromatin Immunoprecipitation/methods ; Protein Binding ; Gene Expression ; Binding Sites
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Multiomics data integration to reveal chromatin remodeling and reorganization induced by gene mutational synergy.
Autorzy:
Yun H; Department of Medicine V, Hematology, Oncology and Rheumatology, University Hospital Heidelberg, Heidelberg, Germany; Molecular Medicine Partnership Unit, European Molecular Biology Laboratory, Heidelberg, Germany. Electronic address: .
Vohra S; Department of Haematology, University of Cambridge, Cambridge, UK; Wellcome - MRC Cambridge Stem Cell Institute, Cambridge, UK.
Lara-Astiaso D; Department of Haematology, University of Cambridge, Cambridge, UK; Wellcome - MRC Cambridge Stem Cell Institute, Cambridge, UK.
Huntly BJP; Department of Haematology, University of Cambridge, Cambridge, UK; Wellcome - MRC Cambridge Stem Cell Institute, Cambridge, UK. Electronic address: .
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Źródło:
STAR protocols [STAR Protoc] 2022 Dec 16; Vol. 3 (4), pp. 101770. Date of Electronic Publication: 2022 Oct 14.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromatin Assembly and Disassembly*
Multiomics*
Animals ; Mice ; Chromatin ; Mutation
Czasopismo naukowe
Szczegóły
Tytuł:
Protocol for isolation and ATAC-seq library construction of zebrafish red blood cells.
Autorzy:
Ding Y; State Key Laboratory of Membrane Biology, Institute of Zoology, Chinese Academy of Sciences, Institute for Stem Cell and Regeneration, University of Chinese Academy of Sciences, Beijing, China; School of Life Sciences, Shandong University, Qingdao, China.
Liu F; State Key Laboratory of Membrane Biology, Institute of Zoology, Chinese Academy of Sciences, Institute for Stem Cell and Regeneration, University of Chinese Academy of Sciences, Beijing, China; School of Life Sciences, Shandong University, Qingdao, China. Electronic address: .
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Źródło:
STAR protocols [STAR Protoc] 2022 Dec 16; Vol. 3 (4), pp. 101889. Date of Electronic Publication: 2022 Nov 23.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Zebrafish*/genetics
Chromatin Immunoprecipitation Sequencing*
Animals ; Sequence Analysis, DNA/methods ; Chromatin ; Erythrocytes
Czasopismo naukowe
Szczegóły
Tytuł:
Cell-type specific profiling of histone post-translational modifications in the adult mouse striatum.
Autorzy:
Carpenter MD; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.; Institute for Translational Medicine and Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.; Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Fischer DK; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.; Institute for Translational Medicine and Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.; Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Zhang S; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.; Institute for Translational Medicine and Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.; Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Bond AM; Department of Neuroscience, University of Pennsylvania, Philadelphia, PA, USA.
Czarnecki KS; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.
Woolf MT; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA.
Song H; Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.; Department of Neuroscience, University of Pennsylvania, Philadelphia, PA, USA.
Heller EA; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA. .; Institute for Translational Medicine and Therapeutics, University of Pennsylvania, Philadelphia, PA, USA. .; Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. .
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Źródło:
Nature communications [Nat Commun] 2022 Dec 13; Vol. 13 (1), pp. 7720. Date of Electronic Publication: 2022 Dec 13.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Histones*/metabolism
Chromatin*
Animals ; Mice ; Chromatin Immunoprecipitation/methods ; Protein Processing, Post-Translational ; DNA/metabolism
Czasopismo naukowe
Szczegóły
Tytuł:
Low cell number ChIP-seq reveals chromatin state-based regulation of gene transcription in the rice male meiocytes.
Autorzy:
Zhang A; State Key Laboratory for Crop Genetics and Germplasm Enhancement, CIC-MCP, Nanjing Agricultural University, Nanjing, Jiangsu, China.
You H; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; University of Chinese Academy of Sciences, Beijing, China.
Cao L; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; University of Chinese Academy of Sciences, Beijing, China.
Shi Y; State Key Laboratory for Crop Genetics and Germplasm Enhancement, CIC-MCP, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Chen J; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; University of Chinese Academy of Sciences, Beijing, China.
Shen Y; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Tao S; State Key Laboratory for Crop Genetics and Germplasm Enhancement, CIC-MCP, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Cheng Z; Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, China.
Zhang W; State Key Laboratory for Crop Genetics and Germplasm Enhancement, CIC-MCP, Nanjing Agricultural University, Nanjing, Jiangsu, China.
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Źródło:
Plant biotechnology journal [Plant Biotechnol J] 2022 Dec; Vol. 20 (12), pp. 2236-2238. Date of Electronic Publication: 2022 Sep 22.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
Oryza*/genetics
Chromatin/genetics ; Transcription, Genetic
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
scVAEBGM: Clustering Analysis of Single-Cell ATAC-seq Data Using a Deep Generative Model.
Autorzy:
Duan H; School of Computer Science, Qufu Normal University, Rizhao, 276826, China.
Li F; School of Computer Science, Qufu Normal University, Rizhao, 276826, China. lifeng_10_.
Shang J; School of Computer Science, Qufu Normal University, Rizhao, 276826, China.
Liu J; School of Computer Science, Qufu Normal University, Rizhao, 276826, China.
Li Y; Department of Electrical Engineering and Information Technology, Shandong University of Science and Technology, Jinan, 250031, Shandong, China.
Liu X; Department of Electrical Engineering and Information Technology, Shandong University of Science and Technology, Jinan, 250031, Shandong, China.
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Źródło:
Interdisciplinary sciences, computational life sciences [Interdiscip Sci] 2022 Dec; Vol. 14 (4), pp. 917-928. Date of Electronic Publication: 2022 Aug 08.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
Single-Cell Analysis*/methods
Bayes Theorem ; Cluster Analysis ; Chromatin ; Transposases
Czasopismo naukowe
Szczegóły
Tytuł:
Nucleosomes and flipons exchange energy to alter chromatin conformation, the readout of genomic information, and cell fate.
Autorzy:
Herbert A; InsideOutBio, Charlestown, Massachusetts, USA.
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Źródło:
BioEssays : news and reviews in molecular, cellular and developmental biology [Bioessays] 2022 Dec; Vol. 44 (12), pp. e2200166. Date of Electronic Publication: 2022 Nov 01.
Typ publikacji:
Review; Journal Article
MeSH Terms:
Nucleosomes*
Chromatin*
Histones/metabolism ; Chromatin Assembly and Disassembly ; Genomics
Czasopismo naukowe
Szczegóły
Tytuł:
Acly Deficiency Enhances Myelopoiesis through Acetyl Coenzyme A and Metabolic-Epigenetic Cross-Talk.
Autorzy:
Greenwood DL; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.
Ramsey HE; Division of Hematology and Oncology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN.
Nguyen PTT; Department of Cancer Biology, Abramson Family Cancer Research Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.; Neuroscience Graduate Group, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA.
Patterson AR; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.
Voss K; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.
Bader JE; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.
Sugiura A; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.
Bacigalupa ZA; Department of Medicine, Vanderbilt University Medical Center, Nashville, TN.
Schaefer S; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.
Ye X; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.
Dahunsi DO; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.
Madden MZ; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.
Wellen KE; Department of Cancer Biology, Abramson Family Cancer Research Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.
Savona MR; Division of Hematology and Oncology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN.; Vanderbilt Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN; and.; Vanderbilt Center for Immunobiology, Vanderbilt University Medical Center, Nashville, TN.
Ferrell PB; Division of Hematology and Oncology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN.; Vanderbilt Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN; and.; Vanderbilt Center for Immunobiology, Vanderbilt University Medical Center, Nashville, TN.
Rathmell JC; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN.; Vanderbilt Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN; and.; Vanderbilt Center for Immunobiology, Vanderbilt University Medical Center, Nashville, TN.
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Źródło:
ImmunoHorizons [Immunohorizons] 2022 Dec 01; Vol. 6 (12), pp. 837-850.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
ATP Citrate (pro-S)-Lyase*/deficiency
ATP Citrate (pro-S)-Lyase*/genetics
Epigenesis, Genetic*
Myelopoiesis*/genetics
Chromatin Assembly and Disassembly*
Animals ; Mice ; Acetyl Coenzyme A/genetics ; Acetyl Coenzyme A/metabolism ; Chromatin/metabolism
Czasopismo naukowe
Szczegóły
Tytuł:
Unorthodox PCNA Binding by Chromatin Assembly Factor 1.
Autorzy:
Gopinathan Nair A; Institute for Research in Immunology and Cancer, University of Montreal, Montreal, QC H3T 1J4, Canada.; Molecular Biology Program, University of Montreal, Montreal, QC H3T 1J4, Canada.
Rabas N; Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, UK.
Lejon S; Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, UK.
Homiski C; Departments of Biochemistry and Microbiology & Immunology, University at Buffalo Jacobs School of Medicine & Biomedical Sciences, 955 Main Street, Buffalo, NY 14210, USA.
Osborne MJ; Institute for Research in Immunology and Cancer, University of Montreal, Montreal, QC H3T 1J4, Canada.
Cyr N; Department of Biochemistry and Molecular Medicine, University of Montreal, Montreal, QC H3C 3J7, Canada.
Sverzhinsky A; Department of Biochemistry and Molecular Medicine, University of Montreal, Montreal, QC H3C 3J7, Canada.
Melendy T; Departments of Biochemistry and Microbiology & Immunology, University at Buffalo Jacobs School of Medicine & Biomedical Sciences, 955 Main Street, Buffalo, NY 14210, USA.
Pascal JM; Department of Biochemistry and Molecular Medicine, University of Montreal, Montreal, QC H3C 3J7, Canada.
Laue ED; Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, UK.
Borden KLB; Institute for Research in Immunology and Cancer, University of Montreal, Montreal, QC H3T 1J4, Canada.; Department of Pathology and Cell Biology, University of Montreal, Montreal, QC H3T 1J4, Canada.
Omichinski JG; Department of Biochemistry and Molecular Medicine, University of Montreal, Montreal, QC H3C 3J7, Canada.
Verreault A; Institute for Research in Immunology and Cancer, University of Montreal, Montreal, QC H3T 1J4, Canada.; Department of Pathology and Cell Biology, University of Montreal, Montreal, QC H3T 1J4, Canada.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Sep 21; Vol. 23 (19). Date of Electronic Publication: 2022 Sep 21.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/genetics
Chromatin*/metabolism
DNA Replication*
Amino Acids/metabolism ; Arginine/metabolism ; Chromatin Assembly Factor-1/chemistry ; Chromatin Assembly Factor-1/genetics ; Chromatin Assembly Factor-1/metabolism ; DNA/metabolism ; Humans ; Peptides/metabolism ; Proliferating Cell Nuclear Antigen/metabolism ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Developmental and housekeeping transcriptional programs in Drosophila require distinct chromatin remodelers.
Autorzy:
Hendy O; Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Campus-Vienna-Biocenter 1, 1030 Vienna, Austria; Vienna BioCenter PhD Program, Doctoral School of the University of Vienna, Medical University of Vienna, 1030 Vienna, Austria.
Serebreni L; Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Campus-Vienna-Biocenter 1, 1030 Vienna, Austria; Vienna BioCenter PhD Program, Doctoral School of the University of Vienna, Medical University of Vienna, 1030 Vienna, Austria.
Bergauer K; Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Campus-Vienna-Biocenter 1, 1030 Vienna, Austria.
Muerdter F; Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Campus-Vienna-Biocenter 1, 1030 Vienna, Austria.
Huber L; Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Campus-Vienna-Biocenter 1, 1030 Vienna, Austria.
Nemčko F; Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Campus-Vienna-Biocenter 1, 1030 Vienna, Austria; Vienna BioCenter PhD Program, Doctoral School of the University of Vienna, Medical University of Vienna, 1030 Vienna, Austria.
Stark A; Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Campus-Vienna-Biocenter 1, 1030 Vienna, Austria; Medical University of Vienna, Vienna BioCenter (VBC), Vienna 1030, Austria. Electronic address: .
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Źródło:
Molecular cell [Mol Cell] 2022 Oct 06; Vol. 82 (19), pp. 3598-3612.e7. Date of Electronic Publication: 2022 Sep 15.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromatin*/genetics
Chromatin*/metabolism
Nucleosomes*/genetics
Nucleosomes*/metabolism
Animals ; Chromatin Assembly and Disassembly ; DNA/metabolism ; Drosophila/genetics ; Drosophila melanogaster/genetics ; Drosophila melanogaster/metabolism ; Household Work
Czasopismo naukowe
Szczegóły
Tytuł:
Phase-separation antagonists potently inhibit transcription and broadly increase nucleosome density.
Autorzy:
Meduri R; Department of Biochemistry and Molecular Biology, Louisiana State University Health Sciences Center, Shreveport, Louisiana, USA.
Rubio LS; Department of Biochemistry and Molecular Biology, Louisiana State University Health Sciences Center, Shreveport, Louisiana, USA.
Mohajan S; Department of Biochemistry and Molecular Biology, Louisiana State University Health Sciences Center, Shreveport, Louisiana, USA.
Gross DS; Department of Biochemistry and Molecular Biology, Louisiana State University Health Sciences Center, Shreveport, Louisiana, USA. Electronic address: .
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Źródło:
The Journal of biological chemistry [J Biol Chem] 2022 Oct; Vol. 298 (10), pp. 102365. Date of Electronic Publication: 2022 Aug 11.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Chromatin*/chemistry
Chromatin*/metabolism
Nucleosomes*/genetics
RNA Polymerase II*/genetics
RNA Polymerase II*/metabolism
Transcription, Genetic*
Glycols*/pharmacology
Chromatin Immunoprecipitation
Czasopismo naukowe
Szczegóły
Tytuł:
Regulation of human cortical interneuron development by the chromatin remodeling protein CHD2.
Autorzy:
Lewis EMA; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Chapman G; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Kaushik K; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Determan J; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Antony I; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Meganathan K; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Narasimhan M; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Gontarz P; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Zhang B; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA.
Kroll KL; Department of Developmental Biology, Washington University School of Medicine, Saint Louis, MO, 63110, USA. .
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Źródło:
Scientific reports [Sci Rep] 2022 Sep 17; Vol. 12 (1), pp. 15636. Date of Electronic Publication: 2022 Sep 17.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Cerebral Cortex*/metabolism
Cerebral Cortex*/physiology
Chromatin Assembly and Disassembly*/genetics
Chromatin Assembly and Disassembly*/physiology
DNA-Binding Proteins*/genetics
DNA-Binding Proteins*/metabolism
Interneurons*/metabolism
Interneurons*/physiology
Neurogenesis*/genetics
Neurogenesis*/physiology
Chromatin/genetics ; Chromatin/metabolism ; Histones/genetics ; Histones/metabolism ; Humans ; Lysine/metabolism ; Transcription Factors/genetics ; Transcription Factors/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The Landscape of Accessible Chromatin during Yak Adipocyte Differentiation.
Autorzy:
Zhang Z; College of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China.
Zhang Y; Key Laboratory of Yak Breeding Engineering Gansu Province, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.; Key Laboratory of Animal Genetics and Breeding on Tibetan Plateau, Ministry of Agriculture and Rural Affairs, Lanzhou 730050, China.
Bao Q; Key Laboratory of Yak Breeding Engineering Gansu Province, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.; Key Laboratory of Animal Genetics and Breeding on Tibetan Plateau, Ministry of Agriculture and Rural Affairs, Lanzhou 730050, China.
Gu Y; Key Laboratory of Yak Breeding Engineering Gansu Province, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.; Key Laboratory of Animal Genetics and Breeding on Tibetan Plateau, Ministry of Agriculture and Rural Affairs, Lanzhou 730050, China.
Liang C; Key Laboratory of Yak Breeding Engineering Gansu Province, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.; Key Laboratory of Animal Genetics and Breeding on Tibetan Plateau, Ministry of Agriculture and Rural Affairs, Lanzhou 730050, China.
Chu M; Key Laboratory of Yak Breeding Engineering Gansu Province, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.; Key Laboratory of Animal Genetics and Breeding on Tibetan Plateau, Ministry of Agriculture and Rural Affairs, Lanzhou 730050, China.
Guo X; Key Laboratory of Yak Breeding Engineering Gansu Province, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.; Key Laboratory of Animal Genetics and Breeding on Tibetan Plateau, Ministry of Agriculture and Rural Affairs, Lanzhou 730050, China.
Bao P; Key Laboratory of Yak Breeding Engineering Gansu Province, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.; Key Laboratory of Animal Genetics and Breeding on Tibetan Plateau, Ministry of Agriculture and Rural Affairs, Lanzhou 730050, China.
Yan P; College of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Sep 01; Vol. 23 (17). Date of Electronic Publication: 2022 Sep 01.
Typ publikacji:
Journal Article
MeSH Terms:
Adipogenesis*/genetics
Chromatin*/genetics
Chromatin*/metabolism
Adipocytes/metabolism ; Animals ; Cattle ; Chromatin Immunoprecipitation Sequencing ; High-Throughput Nucleotide Sequencing
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Manipulating chromatin architecture in C. elegans.
Autorzy:
Carter JL; Department of Microbiology and Molecular Biology, College of Life Sciences, Brigham Young University, Provo, UT, 84602, USA.
Kempton CE; Department of Microbiology and Molecular Biology, College of Life Sciences, Brigham Young University, Provo, UT, 84602, USA.
Hales EDS; Department of Microbiology and Molecular Biology, College of Life Sciences, Brigham Young University, Provo, UT, 84602, USA.
Johnson SM; Department of Microbiology and Molecular Biology, College of Life Sciences, Brigham Young University, Provo, UT, 84602, USA. .
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Źródło:
Epigenetics & chromatin [Epigenetics Chromatin] 2022 Nov 29; Vol. 15 (1), pp. 38. Date of Electronic Publication: 2022 Nov 29.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*
Caenorhabditis elegans*/genetics
Animals ; Nucleosomes ; Chromatin Assembly and Disassembly ; Transcription Factors/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Wyświetlanie 1-20 z 124759

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