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Wyszukujesz frazę ""Chromatin"" wg kryterium: Temat


Starter badań:

Tytuł:
Uncovering uncharacterized binding of transcription factors from ATAC-seq footprinting data.
Autorzy:
Schultheis H; Bioinformatics Core Unit (BCU), Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Bentsen M; Bioinformatics Core Unit (BCU), Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Heger V; Bioinformatics Core Unit (BCU), Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Looso M; Bioinformatics Core Unit (BCU), Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany. .; Cardio-Pulmonary Institute (CPI), Bad Nauheim, Germany. .
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Źródło:
Scientific reports [Sci Rep] 2024 Apr 23; Vol. 14 (1), pp. 9275. Date of Electronic Publication: 2024 Apr 23.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcription Factors*/metabolism
Transcription Factors*/genetics
Zebrafish*/genetics
Zebrafish*/metabolism
Chromatin Immunoprecipitation Sequencing*/methods
Nucleotide Motifs*
Animals ; Humans ; Binding Sites ; Protein Binding ; DNA Footprinting/methods ; Computational Biology/methods ; Chromatin/metabolism ; Chromatin/genetics
Czasopismo naukowe
Tytuł:
From compartments to loops: understanding the unique chromatin organization in neuronal cells.
Autorzy:
Zagirova D; Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Bolshoy Boulevard 30, Build.1, Moscow, 121205, Russia.; Research and Training Center on Bioinformatics, Institute for Information Transmission Problems (Kharkevich Institute) RAS, Bolshoy Karetny per. 19, Build.1, Moscow, 127051, Russia.
Kononkova A; Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Bolshoy Boulevard 30, Build.1, Moscow, 121205, Russia.
Vaulin N; Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Bolshoy Boulevard 30, Build.1, Moscow, 121205, Russia.
Khrameeva E; Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Bolshoy Boulevard 30, Build.1, Moscow, 121205, Russia. .
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Źródło:
Epigenetics & chromatin [Epigenetics Chromatin] 2024 May 23; Vol. 17 (1), pp. 18. Date of Electronic Publication: 2024 May 23.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Neurons*/metabolism
Neurons*/cytology
Chromatin*/metabolism
Brain*/metabolism
Humans ; Animals ; Polycomb-Group Proteins/metabolism ; Polycomb-Group Proteins/genetics ; Chromatin Assembly and Disassembly
Czasopismo naukowe
Tytuł:
MMGAT: a graph attention network framework for ATAC-seq motifs finding.
Autorzy:
Wu X; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China.; School of Artificial Intelligence, Jilin University, Changchun, 130012, China.
Hou W; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China.
Zhao Z; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China.
Huang L; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China.
Sheng N; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China.
Yang Q; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China.
Zhang S; School of Cyber Science and Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China. .
Wang Y; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China. .; School of Artificial Intelligence, Jilin University, Changchun, 130012, China. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Apr 20; Vol. 25 (1), pp. 158. Date of Electronic Publication: 2024 Apr 20.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
Genomics*/methods
Humans ; Animals ; Mice ; Binding Sites ; Protein Binding ; Chromatin/genetics ; Transcription Factors/metabolism
Czasopismo naukowe
Tytuł:
A low-input high resolution sequential chromatin immunoprecipitation method captures genome-wide dynamics of bivalent chromatin.
Autorzy:
Seneviratne JA; Peter MacCallum Cancer Centre, Melbourne, Victoria, 3000, Australia.; Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria, 3010, Australia.
Ho WWH; Peter MacCallum Cancer Centre, Melbourne, Victoria, 3000, Australia.
Glancy E; Peter MacCallum Cancer Centre, Melbourne, Victoria, 3000, Australia.; Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria, 3010, Australia.
Eckersley-Maslin MA; Peter MacCallum Cancer Centre, Melbourne, Victoria, 3000, Australia. .; Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria, 3010, Australia. .; Department of Anatomy and Physiology, The University of Melbourne, Victoria, 3010, Australia. .
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Źródło:
Epigenetics & chromatin [Epigenetics Chromatin] 2024 Feb 10; Vol. 17 (1), pp. 3. Date of Electronic Publication: 2024 Feb 10.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/genetics
Histones*/genetics
Animals ; Mice ; Nucleosomes ; Genome ; Chromatin Immunoprecipitation ; Transcription Factors/genetics
Czasopismo naukowe
Tytuł:
Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness.
Autorzy:
Chowdhury HMAM; Department of Computer Science, University of Colorado at Colorado Springs, 1420 Austin Bluffs Pkwy, Colorado Springs, CO, 80918, USA.
Boult T; Department of Computer Science, University of Colorado at Colorado Springs, 1420 Austin Bluffs Pkwy, Colorado Springs, CO, 80918, USA.
Oluwadare O; Department of Computer Science, University of Colorado at Colorado Springs, 1420 Austin Bluffs Pkwy, Colorado Springs, CO, 80918, USA. .; Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus, Aurora, CO, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 21; Vol. 25 (1), pp. 123. Date of Electronic Publication: 2024 Mar 21.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/genetics
Chromosomes*
DNA ; Chromatin Immunoprecipitation Sequencing ; Algorithms
Czasopismo naukowe
Tytuł:
Integration analysis of ATAC-seq and RNA-seq provides insight into fatty acid biosynthesis in Schizochytrium limacinum under nitrogen limitation stress.
Autorzy:
Chen D; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Chen J; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Dai R; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Zheng X; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Han Y; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Chen Y; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China.
Xue T; The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian, Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, College of Life Sciences, Fujian Normal University, Fuzhou, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Feb 05; Vol. 25 (1), pp. 141. Date of Electronic Publication: 2024 Feb 05.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
Stramenopiles*/genetics
Stramenopiles*/metabolism
Humans ; RNA-Seq ; Nitrogen/metabolism ; Fatty Acids/metabolism ; Chromatin/metabolism ; Docosahexaenoic Acids
Czasopismo naukowe
Tytuł:
Peak Scores Significantly Depend on the Relationships between Contextual Signals in ChIP-Seq Peaks.
Autorzy:
Vishnevsky OV; Institute of Cytology and Genetics, 630090 Novosibirsk, Russia.; Department of Natural Science, Novosibirsk State University, 630090 Novosibirsk, Russia.
Bocharnikov AV; Department of Natural Science, Novosibirsk State University, 630090 Novosibirsk, Russia.
Ignatieva EV; Institute of Cytology and Genetics, 630090 Novosibirsk, Russia.; Department of Natural Science, Novosibirsk State University, 630090 Novosibirsk, Russia.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Jan 13; Vol. 25 (2). Date of Electronic Publication: 2024 Jan 13.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
Transcription Factors*/genetics
Chromatin Immunoprecipitation ; Sequence Analysis, DNA ; DNA/genetics
Czasopismo naukowe
Tytuł:
The CHD family chromatin remodeling enzyme, Kismet, promotes both clathrin-mediated and activity-dependent bulk endocytosis.
Autorzy:
Hendricks EL; Department of Biological Sciences, Southern Illinois University Edwardsville, Edwardsville, Illinois, United States of America.
Liebl FLW; Department of Biological Sciences, Southern Illinois University Edwardsville, Edwardsville, Illinois, United States of America.
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Źródło:
PloS one [PLoS One] 2024 Mar 21; Vol. 19 (3), pp. e0300255. Date of Electronic Publication: 2024 Mar 21 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Clathrin*/metabolism
Chromatin*
Animals ; Chromatin Assembly and Disassembly ; Synaptic Transmission/physiology ; Drosophila/metabolism ; Endocytosis/genetics ; DNA Helicases/genetics ; DNA Helicases/metabolism
Czasopismo naukowe
Tytuł:
GNNMF: a multi-view graph neural network for ATAC-seq motif finding.
Autorzy:
Zhang S; School of Cyber Science and Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China.
Wu X; School of Artificial Intelligence, Jilin University, Changchun, 130012, China.
Lian Z; School of Cyber Science and Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China. .
Zuo C; Institute of Artificial Intelligence, Donghua University, Shanghai, 201620, China.
Wang Y; School of Artificial Intelligence, Jilin University, Changchun, 130012, China. .; Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China. .
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Źródło:
BMC genomics [BMC Genomics] 2024 Mar 21; Vol. 25 (1), pp. 300. Date of Electronic Publication: 2024 Mar 21.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
High-Throughput Nucleotide Sequencing*
Humans ; Animals ; Mice ; Sequence Analysis, DNA ; Chromatin/genetics ; Neural Networks, Computer
Czasopismo naukowe
Tytuł:
An in silico procedure for generating protein-mediated chromatin interaction data and comparison of significant interaction calling methods.
Autorzy:
Lou S; Interdisciplinary Ph.D. Program in Biostatistics, The Ohio State University, Columbus, OH, United States of America.
Lin S; Interdisciplinary Ph.D. Program in Biostatistics, The Ohio State University, Columbus, OH, United States of America.; Department of Statistics, The Ohio State University, Columbus, OH, United States of America.; Translational Data Analytics Institute, The Ohio State University, Columbus, OH, United States of America.
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Źródło:
PloS one [PLoS One] 2024 Jan 17; Vol. 19 (1), pp. e0287521. Date of Electronic Publication: 2024 Jan 17 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*
Chromosomes*
Sequence Analysis, DNA/methods ; Computer Simulation ; Chromatin Immunoprecipitation Sequencing
Czasopismo naukowe
Tytuł:
High-capacity sample multiplexing for single cell chromatin accessibility profiling.
Autorzy:
Booth GT; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Daza RM; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Srivatsan SR; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
McFaline-Figueroa JL; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Department of Biomedical Engineering, Columbia University, New York City, NY, USA.
Gladden RG; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Mullen AC; Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Furlan SN; Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Department of Pediatrics, University of Washington, Seattle, WA, USA.
Shendure J; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.; Allen Discovery Center for Cell Lineage Tracing, Seattle, WA, USA.; Howard Hughes Medical Institute, Seattle, WA, USA.
Trapnell C; Department of Genome Sciences, University of Washington, Seattle, WA, USA. .; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA. .; Allen Discovery Center for Cell Lineage Tracing, Seattle, WA, USA. .
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Źródło:
BMC genomics [BMC Genomics] 2023 Dec 04; Vol. 24 (1), pp. 737. Date of Electronic Publication: 2023 Dec 04.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/genetics
DNA*/genetics
Chromatin Immunoprecipitation Sequencing ; Sequence Analysis, DNA/methods ; Epigenomics/methods
Czasopismo naukowe
Tytuł:
Transcription induces context-dependent remodeling of chromatin architecture during differentiation.
Autorzy:
Chahar S; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
Ben Zouari Y; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
Salari H; Laboratoire de Biologie et Modélisation de la Cellule, École Normale Supérieure de Lyon, CNRS, UMR5239, Inserm U1293, Université Claude Bernard Lyon 1, Lyon, France.
Kobi D; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
Maroquenne M; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
Erb C; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
Molitor AM; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
Mossler A; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
Karasu N; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
Jost D; Laboratoire de Biologie et Modélisation de la Cellule, École Normale Supérieure de Lyon, CNRS, UMR5239, Inserm U1293, Université Claude Bernard Lyon 1, Lyon, France.
Sexton T; University of Strasbourg, CNRS, Inserm, IGBMC UMR 7104-UMR-S 1258, Illkirch, France.
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Źródło:
PLoS biology [PLoS Biol] 2023 Dec 04; Vol. 21 (12), pp. e3002424. Date of Electronic Publication: 2023 Dec 04 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/genetics
Chromosomes*/metabolism
Animals ; Mice ; Transcription, Genetic ; Cell Differentiation/genetics ; Genome ; Chromatin Assembly and Disassembly ; CCCTC-Binding Factor/genetics
Czasopismo naukowe
Tytuł:
Improved quality metrics for association and reproducibility in chromatin accessibility data using mutual information.
Autorzy:
Roth C; Los Alamos National Laboratory, Genomics and Bioanalytics, Los Alamos, NM, USA. .
Venu V; Los Alamos National Laboratory, Climate, Ecosystems, and Environmental Science, Los Alamos, NM, USA.
Job V; Los Alamos National Laboratory, High Performance Computing and Design, Los Alamos, NM, USA.
Lubbers N; Los Alamos National Laboratory, Information Sciences, Los Alamos, NM, USA.
Sanbonmatsu KY; Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, NM, USA.
Steadman CR; Los Alamos National Laboratory, Climate, Ecosystems, and Environmental Science, Los Alamos, NM, USA.
Starkenburg SR; Los Alamos National Laboratory, Genomics and Bioanalytics, Los Alamos, NM, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Nov 22; Vol. 24 (1), pp. 441. Date of Electronic Publication: 2023 Nov 22.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/genetics
High-Throughput Nucleotide Sequencing*
Humans ; Reproducibility of Results ; Chromatin Immunoprecipitation Sequencing ; Transposases/genetics ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł:
Analyzing histone ChIP-seq data with a bin-based probability of being signal.
Autorzy:
Hecht V; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Dong K; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Rajesh S; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Shpilker P; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Wekhande S; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Shoresh N; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Oct 20; Vol. 19 (10), pp. e1011568. Date of Electronic Publication: 2023 Oct 20 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Histones*/genetics
Histones*/metabolism
Chromatin Immunoprecipitation Sequencing*
Chromatin Immunoprecipitation/methods ; Genome ; Probability ; Sequence Analysis, DNA/methods ; High-Throughput Nucleotide Sequencing/methods
Czasopismo naukowe
Tytuł:
Ribosome biogenesis disruption mediated chromatin structure changes revealed by SRAtac, a customizable end to end analysis pipeline for ATAC-seq.
Autorzy:
Freeman TF; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA.
Zhao Q; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA.
Surya A; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA.
Rothe R; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA.
Cenik ES; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA. .
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Źródło:
BMC genomics [BMC Genomics] 2023 Sep 01; Vol. 24 (1), pp. 512. Date of Electronic Publication: 2023 Sep 01.
Typ publikacji:
Journal Article
MeSH Terms:
Caenorhabditis elegans*/genetics
Chromatin Immunoprecipitation Sequencing*
Animals ; Chromatin/genetics ; RNA, Ribosomal/genetics ; Ribosomes
Czasopismo naukowe
Tytuł:
Recruitment of the Histone Variant MacroH2A1 to the Pericentric Region Occurs upon Chromatin Relaxation and Is Responsible for Major Satellite Transcriptional Regulation.
Autorzy:
Recoules L; Centre de Biologie Intégrative (CBI), MCD, Université de Toulouse Paul Sabatier, UPS, Université de Toulouse, UT, CNRS, F-31062 Toulouse, France.
Tanguy Le Gac N; Centre de Biologie Intégrative (CBI), MCD, Université de Toulouse Paul Sabatier, UPS, Université de Toulouse, UT, CNRS, F-31062 Toulouse, France.
Moutahir F; Centre de Biologie Intégrative (CBI), MCD, Université de Toulouse Paul Sabatier, UPS, Université de Toulouse, UT, CNRS, F-31062 Toulouse, France.
Bystricky K; Centre de Biologie Intégrative (CBI), MCD, Université de Toulouse Paul Sabatier, UPS, Université de Toulouse, UT, CNRS, F-31062 Toulouse, France.; Institut Universitaire de France (IUF), F-75231 Paris, France.
Lavigne AC; Centre de Biologie Intégrative (CBI), MCD, Université de Toulouse Paul Sabatier, UPS, Université de Toulouse, UT, CNRS, F-31062 Toulouse, France.
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Źródło:
Cells [Cells] 2023 Aug 30; Vol. 12 (17). Date of Electronic Publication: 2023 Aug 30.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromatin*
Histones*
Animals ; Mice ; Heterochromatin ; Gene Expression Regulation ; Chromatin Assembly and Disassembly
Czasopismo naukowe
Tytuł:
Differential Contributions of mSWI/SNF Chromatin Remodeler Sub-Families to Myoblast Differentiation.
Autorzy:
Padilla-Benavides T; Department of Molecular Biology and Biochemistry, Wesleyan University, Middletown, CT 06459, USA.
Olea-Flores M; Department of Molecular Biology and Biochemistry, Wesleyan University, Middletown, CT 06459, USA.; Department of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Sharma T; Department of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Syed SA; Department of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Witwicka H; Department of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Zuñiga-Eulogio MD; Department of Molecular Biology and Biochemistry, Wesleyan University, Middletown, CT 06459, USA.; Facultad de Ciencias Químico Biológicas, Universidad Autónoma de Guerrero, Chilpancingo de los Bravo 39086, GRO, Mexico.
Zhang K; Department of Molecular Biology and Biochemistry, Wesleyan University, Middletown, CT 06459, USA.
Navarro-Tito N; Facultad de Ciencias Químico Biológicas, Universidad Autónoma de Guerrero, Chilpancingo de los Bravo 39086, GRO, Mexico.
Imbalzano AN; Department of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Jul 09; Vol. 24 (14). Date of Electronic Publication: 2023 Jul 09.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*
Chromosomal Proteins, Non-Histone*/genetics
Chromosomal Proteins, Non-Histone*/metabolism
Humans ; Animals ; Chromatin Assembly and Disassembly/genetics ; Myoblasts/metabolism ; Mammals/metabolism
Czasopismo naukowe
Tytuł:
An Integrative ATAC-Seq and RNA-Seq Analysis of the Endometrial Tissues of Meishan and Duroc Pigs.
Autorzy:
Zhang H; National Engineering Laboratory for Animal Breeding, Department of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China.
Liu Z; National Engineering Laboratory for Animal Breeding, Department of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China.
Wang J; National Engineering Laboratory for Animal Breeding, Department of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China.
Zeng T; National Engineering Laboratory for Animal Breeding, Department of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China.
Ai X; National Engineering Laboratory for Animal Breeding, Department of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China.
Wu K; National Engineering Laboratory for Animal Breeding, Department of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Sep 30; Vol. 24 (19). Date of Electronic Publication: 2023 Sep 30.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
Fertility*/genetics
Pregnancy ; Female ; Swine ; Animals ; RNA-Seq ; Litter Size/genetics ; Chromatin
Czasopismo naukowe
Tytuł:
Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1.
Autorzy:
Liu CP; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Yu Z; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Xiong J; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Hu J; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Song A; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Ding D; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Yu C; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.; Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, Zhejiang 310024, China.
Yang N; State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy and Key Laboratory of Medical Data Analysis and Statistical Research of Tianjin, Nankai University, Tianjin 300353, China.
Wang M; Institutes of Physical Science and Information Technology, Anhui University, Hefei, Anhui 230601, China.
Yu J; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Hou P; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Zeng K; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.; School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
Li Z; School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
Zhang Z; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Zhang X; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.; School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
Li W; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.; School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
Zhang Z; Institute for Cancer Genetics, Department of Pediatrics and Department of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032, USA.
Zhu B; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.; School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.; New Cornerstone Science Laboratory, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Li G; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.; School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
Xu RM; National Laboratory of Biomacromolecules and Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.; Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, Zhejiang 310024, China.; School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
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Źródło:
Science (New York, N.Y.) [Science] 2023 Aug 25; Vol. 381 (6660), pp. eadd8673. Date of Electronic Publication: 2023 Aug 25.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Assembly Factor-1*/chemistry
Histones*/chemistry
Nucleosomes*
Humans ; Chromatin ; Cryoelectron Microscopy ; Crystallography, X-Ray ; Protein Domains
Czasopismo naukowe
Tytuł:
Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility.
Autorzy:
Wu H; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA.
Muñoz EN; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA.; Tetrad Graduate Program, University of California San Francisco, San Francisco, CA 94158, USA.
Hsieh LJ; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA.
Chio US; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA.
Gourdet MA; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA.; Tetrad Graduate Program, University of California San Francisco, San Francisco, CA 94158, USA.
Narlikar GJ; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA.
Cheng Y; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA 94158, USA.; Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CA 94158, USA.
Pokaż więcej
Źródło:
Science (New York, N.Y.) [Science] 2023 Jul 21; Vol. 381 (6655), pp. 319-324. Date of Electronic Publication: 2023 Jun 29.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin Assembly and Disassembly*
Nucleosomes*/chemistry
Saccharomyces cerevisiae*/chemistry
Saccharomyces cerevisiae*/ultrastructure
Saccharomyces cerevisiae Proteins*/chemistry
Chromatin/metabolism ; Histones/metabolism
Czasopismo naukowe

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