Temat: "Chromatin Immunoprecipitation" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Glucocorticoid receptor wields chromatin interactions to tune transcription for cytoskeleton stabilization in podocytes.
Autorzy:: Wang H; Medical School of Nanjing University, Nanjing, Jiangsu, China.
Duan A; Medical School of Nanjing University, Nanjing, Jiangsu, China.; National Clinical Research Center for Kidney Disease, Jinling Hospital, Medical School of Nanjing University, Nanjing, Jiangsu, China.
Zhang J; Medical School of Nanjing University, Nanjing, Jiangsu, China.
Wang Q; Medical School of Nanjing University, Nanjing, Jiangsu, China.
Xing Y; National Clinical Research Center for Kidney Disease, Jinling Hospital, Medical School of Nanjing University, Nanjing, Jiangsu, China.
Qin Z; Department of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, GA, USA.
Liu Z; Medical School of Nanjing University, Nanjing, Jiangsu, China. .; National Clinical Research Center for Kidney Disease, Jinling Hospital, Medical School of Nanjing University, Nanjing, Jiangsu, China. .
Yang J; Medical School of Nanjing University, Nanjing, Jiangsu, China. .; National Clinical Research Center for Kidney Disease, Jinling Hospital, Medical School of Nanjing University, Nanjing, Jiangsu, China. .; Pokaż więcej
Źródło:: Communications biology [Commun Biol] 2021 Jun 03; Vol. 4 (1), pp. 675. Date of Electronic Publication: 2021 Jun 03.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Transcription, Genetic*
Chromatin/*metabolism
Cytoskeleton/*metabolism
Podocytes/*metabolism
Receptors, Glucocorticoid/*metabolism
A549 Cells ; Binding Sites/genetics ; Cell Line ; Cells, Cultured ; Chromatin/genetics ; Chromatin Immunoprecipitation Sequencing/methods ; Glucocorticoids/pharmacology ; HeLa Cells ; Humans ; K562 Cells ; MCF-7 Cells ; Podocytes/cytology ; Podocytes/drug effects ; Protein Binding ; Receptors, Glucocorticoid/genetics ; Regulatory Elements, Transcriptional/genetics ; Transcriptome/genetics

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Skocz do pozycji: 2.

Tytuł:: Genome-wide histone acetylation analysis reveals altered transcriptional regulation in the Parkinson's disease brain.
Autorzy:: Toker L; Neuro-SysMed Center of Excellence for Clinical Research in Neurological Diseases, Department of Neurology, Haukeland University Hospital, 5021, Bergen, Norway.; Department of Clinical Medicine, University of Bergen, Pb 7804, 5020, Bergen, Norway.
Tran GT; Neuro-SysMed Center of Excellence for Clinical Research in Neurological Diseases, Department of Neurology, Haukeland University Hospital, 5021, Bergen, Norway.; Department of Clinical Medicine, University of Bergen, Pb 7804, 5020, Bergen, Norway.
Sundaresan J; Neuro-SysMed Center of Excellence for Clinical Research in Neurological Diseases, Department of Neurology, Haukeland University Hospital, 5021, Bergen, Norway.; Department of Clinical Medicine, University of Bergen, Pb 7804, 5020, Bergen, Norway.
Tysnes OB; Neuro-SysMed Center of Excellence for Clinical Research in Neurological Diseases, Department of Neurology, Haukeland University Hospital, 5021, Bergen, Norway.; Department of Clinical Medicine, University of Bergen, Pb 7804, 5020, Bergen, Norway.
Alves G; The Norwegian Centre for Movement Disorders and Department of Neurology, Stavanger University Hospital, Pb 8100, 4068, Stavanger, Norway.; Department of Mathematics and Natural Sciences, University of Stavanger, 4062, Stavanger, Norway.
Haugarvoll K; Neuro-SysMed Center of Excellence for Clinical Research in Neurological Diseases, Department of Neurology, Haukeland University Hospital, 5021, Bergen, Norway.; Department of Clinical Medicine, University of Bergen, Pb 7804, 5020, Bergen, Norway.
Nido GS; Neuro-SysMed Center of Excellence for Clinical Research in Neurological Diseases, Department of Neurology, Haukeland University Hospital, 5021, Bergen, Norway.; Department of Clinical Medicine, University of Bergen, Pb 7804, 5020, Bergen, Norway.
Dölle C; Neuro-SysMed Center of Excellence for Clinical Research in Neurological Diseases, Department of Neurology, Haukeland University Hospital, 5021, Bergen, Norway.; Department of Clinical Medicine, University of Bergen, Pb 7804, 5020, Bergen, Norway.
Tzoulis C; Neuro-SysMed Center of Excellence for Clinical Research in Neurological Diseases, Department of Neurology, Haukeland University Hospital, 5021, Bergen, Norway. .; Department of Clinical Medicine, University of Bergen, Pb 7804, 5020, Bergen, Norway. .; Pokaż więcej
Źródło:: Molecular neurodegeneration [Mol Neurodegener] 2021 May 05; Vol. 16 (1), pp. 31. Date of Electronic Publication: 2021 May 05.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:: Brain Chemistry*
Histone Code*
Protein Processing, Post-Translational*
Transcription, Genetic*
Histones/*metabolism
Parkinson Disease/*genetics
Acetylation ; Antiparkinson Agents/pharmacology ; Base Sequence ; Cell Line, Tumor ; Chromatin Immunoprecipitation ; Gene Expression Regulation/drug effects ; Genome, Human ; Humans ; Neurons/drug effects ; Parkinson Disease/metabolism ; Prefrontal Cortex/chemistry ; Sirtuin 1/analysis ; Sirtuin 2/analysis ; Sirtuin 3/analysis

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Skocz do pozycji: 3.

Tytuł:: TRlnc: a comprehensive database for human transcriptional regulatory information of lncRNAs.
Autorzy:: Li Y
Li X
Yang Y
Li M
Qian F
Tang Z
Zhao J
Zhang J
Bai X
Jiang Y
Zhou J
Zhang Y
Zhou L
Xie J
Li E
Wang Q
Li C; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.; Pokaż więcej
Źródło:: Briefings in bioinformatics [Brief Bioinform] 2021 Mar 22; Vol. 22 (2), pp. 1929-1939.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Databases, Genetic*
Regulatory Sequences, Nucleic Acid*
Transcription, Genetic*
RNA, Long Noncoding/*genetics
Chromatin Immunoprecipitation ; Enhancer Elements, Genetic ; Humans ; Linkage Disequilibrium ; Methylation ; Polymorphism, Single Nucleotide ; Promoter Regions, Genetic ; Quantitative Trait Loci

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Skocz do pozycji: 4.

Tytuł:: Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function.
Autorzy:: de Jonge WJ; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Brok M; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Lijnzaad P; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Kemmeren P; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Holstege FC; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.; Pokaż więcej
Źródło:: Molecular systems biology [Mol Syst Biol] 2020 Oct; Vol. 16 (10), pp. e9885.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Transcription, Genetic*/genetics
Chromatin/*metabolism
Chromatin Immunoprecipitation Sequencing/*methods
DNA-Binding Proteins/*metabolism
Nucleosomes/*metabolism
Saccharomyces cerevisiae/*metabolism
Saccharomyces cerevisiae Proteins/*metabolism
Transcription Factors/*metabolism
Binding Sites ; Chromatin/genetics ; Chromatin Assembly and Disassembly/genetics ; DNA-Binding Proteins/genetics ; Gene Expression Regulation, Fungal/genetics ; Genome, Fungal ; Micrococcal Nuclease/metabolism ; Nucleosomes/genetics ; Promoter Regions, Genetic ; Protein Binding ; RNA Polymerase II/genetics ; RNA Polymerase II/metabolism ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae Proteins/genetics ; Transcription Factors/genetics

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Skocz do pozycji: 5.

Tytuł:: Active transcription and Orc1 drive chromatin association of the AAA+ ATPase Pch2 during meiotic G2/prophase.
Autorzy:: Cardoso da Silva R; Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany.
Villar-Fernández MA; Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany.; International Max Planck Research School (IMPRS) in Chemical and Molecular Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany.
Vader G; Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany.; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2020 Jun 22; Vol. 16 (6), pp. e1008905. Date of Electronic Publication: 2020 Jun 22 (Print Publication: 2020).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Transcription, Genetic*
Nuclear Proteins/*metabolism
Origin Recognition Complex/*metabolism
Saccharomyces cerevisiae/*genetics
Saccharomyces cerevisiae Proteins/*metabolism
Synaptonemal Complex/*metabolism
Chromatin/metabolism ; Chromatin Immunoprecipitation Sequencing ; Chromosomes, Fungal/metabolism ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; G2 Phase/genetics ; Mutation ; Nuclear Proteins/genetics ; Origin Recognition Complex/genetics ; RNA Polymerase II/metabolism ; RNA-Seq ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/genetics ; Synaptonemal Complex/genetics

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Skocz do pozycji: 6.

Tytuł:: Transcriptional Regulation of the Angptl8 Gene by Hepatocyte Nuclear Factor-1 in the Murine Liver.
Autorzy:: Watanabe T; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Ozawa A; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan. .
Masuda S; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Yoshino S; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Ishida E; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Kondo Y; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Matsumoto S; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Katano-Toki A; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Horiguchi K; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Nakajima Y; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Yamada E; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Tomaru T; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Saito T; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Ishii S; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Shibusawa N; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Okada S; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Satoh T; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.
Yamada M; Department of Internal Medicine, Division of Endocrinology and Metabolism, Gunma University Graduate School of Medicine, 3-39-15 Showa-machi, Maebashi, 371-8511, Japan.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2020 Jun 19; Vol. 10 (1), pp. 9999. Date of Electronic Publication: 2020 Jun 19.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Gene Expression Regulation*
Angiopoietin-like Proteins/*genetics
Hepatocyte Nuclear Factor 1/*genetics
Liver/*metabolism
Transcription, Genetic/*genetics
Angiopoietin-Like Protein 8 ; Angiopoietin-like Proteins/metabolism ; Animals ; Cell Line ; Chromatin Immunoprecipitation ; Hepatocyte Nuclear Factor 1/metabolism ; Hepatocytes/metabolism ; Mice ; Promoter Regions, Genetic

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Skocz do pozycji: 7.

Tytuł:: Benzodiazepines Drive Alteration of Chromatin at the Integrated HIV-1 LTR.
Autorzy:: Elbezanti W; Department of Biological Sciences, University of the Sciences, Philadelphia, PA 19104, USA.
Lin A; Department of Biological Sciences, University of the Sciences, Philadelphia, PA 19104, USA.
Schirling A; Department of Biological Sciences, University of the Sciences, Philadelphia, PA 19104, USA.
Jackson A; Department of Biological Sciences, University of the Sciences, Philadelphia, PA 19104, USA.
Marshall M; Department of Biological Sciences, University of the Sciences, Philadelphia, PA 19104, USA.
Duyne RV; Department of Biological Sciences, University of the Sciences, Philadelphia, PA 19104, USA.
Maldarelli F; HIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.
Sardo L; Department of Biological Sciences, University of the Sciences, Philadelphia, PA 19104, USA.; Currently at Department of Infectious Diseases and Vaccines, MRL, Merck & Co., Inc., West Point, PA 19486, USA.
Klase Z; Department of Biological Sciences, University of the Sciences, Philadelphia, PA 19104, USA.; Substance Use Disorder Institute, University of the Sciences, Philadelphia, PA 19104, USA.; Pokaż więcej
Źródło:: Viruses [Viruses] 2020 Feb 09; Vol. 12 (2). Date of Electronic Publication: 2020 Feb 09.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:: Virus Integration*
Benzodiazepines/*pharmacology
Chromatin/*genetics
Core Binding Factor Alpha 2 Subunit/*metabolism
HIV Long Terminal Repeat/*genetics
Transcription, Genetic/*drug effects
Chromatin Immunoprecipitation ; Core Binding Factor Alpha 2 Subunit/antagonists & inhibitors ; Gene Expression Regulation ; HIV-1 ; Humans ; Leukocytes, Mononuclear/virology ; STAT5 Transcription Factor/genetics

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Skocz do pozycji: 8.

Tytuł:: Distinct patterns of transcriptional and epigenetic alterations characterize acute and chronic kidney injury.
Autorzy:: Sharifian R; UW Medicine South Lake Union, University of Washington, Seattle, WA, 98109, USA.
Okamura DM; Seattle Children's Research Institute, Center for Developmental Biology & Regenerative Medicine, University of Washington, Seattle, WA, 98105, USA.
Denisenko O; UW Medicine South Lake Union, University of Washington, Seattle, WA, 98109, USA.
Zager RA; The Fred Hutchinson Cancer Research Center Seattle, Seattle, WA, 98109, USA.
Johnson A; The Fred Hutchinson Cancer Research Center Seattle, Seattle, WA, 98109, USA.
Gharib SA; UW Medicine South Lake Union, University of Washington, Seattle, WA, 98109, USA.; Computational Medicine Core, Center for Lung Biology, University of Washington, Seattle, WA, 98109, USA.
Bomsztyk K; UW Medicine South Lake Union, University of Washington, Seattle, WA, 98109, USA. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2018 Dec 14; Vol. 8 (1), pp. 17870. Date of Electronic Publication: 2018 Dec 14.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:: Epigenesis, Genetic*
Transcription, Genetic*
Acute Kidney Injury/*pathology
Renal Insufficiency, Chronic/*pathology
Animals ; Chromatin Immunoprecipitation ; Disease Models, Animal ; Gene Expression Profiling ; Mice ; Real-Time Polymerase Chain Reaction ; Sequence Analysis, RNA

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Skocz do pozycji: 9.

Tytuł:: Insights into mammalian transcription control by systematic analysis of ChIP sequencing data.
Autorzy:: Devailly G; Division of Developmental Biology, the Roslin Institute, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK.
Joshi A; Division of Developmental Biology, the Roslin Institute, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK. .; Pokaż więcej
Źródło:: BMC bioinformatics [BMC Bioinformatics] 2018 Nov 20; Vol. 19 (Suppl 14), pp. 409. Date of Electronic Publication: 2018 Nov 20.
Typ publikacji:: Journal Article
MeSH Terms:: Data Analysis*
Transcription, Genetic*
Chromatin Immunoprecipitation/*methods
Mammals/*genetics
Animals ; Base Sequence ; Gene Expression Regulation ; Genetic Loci ; Genetic Predisposition to Disease ; Genome ; Humans ; Mice ; Nucleotide Motifs/genetics ; Promoter Regions, Genetic ; Sequence Analysis, DNA ; Transcription Factors/metabolism ; Transcription Initiation Site

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Skocz do pozycji: 10.

Tytuł:: H4K20me3 co-localizes with activating histone modifications at transcriptionally dynamic regions in embryonic stem cells.
Autorzy:: Xu J; Department of Neurology, Wayne State University School of Medicine, Detroit, MI, USA.
Kidder BL; Department of Oncology, Wayne State University School of Medicine, Detroit, MI, USA. .; Karmanos Cancer Institute, Wayne State University School of Medicine, Detroit, MI, USA. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2018 Jul 03; Vol. 19 (1), pp. 514. Date of Electronic Publication: 2018 Jul 03.
Typ publikacji:: Journal Article
MeSH Terms:: Transcription, Genetic*
Histones/*metabolism
Animals ; Cell Line ; Chromatin Immunoprecipitation ; Epigenomics ; Heterochromatin/metabolism ; Histones/genetics ; Methylation ; Mice ; Mouse Embryonic Stem Cells/cytology ; Mouse Embryonic Stem Cells/metabolism ; Promoter Regions, Genetic ; RNA Polymerase II/metabolism ; Sequence Analysis, RNA

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Skocz do pozycji: 11.

Tytuł:: ChIP-Seq analysis identifies p27(Kip1)-target genes involved in cell adhesion and cell signalling in mouse embryonic fibroblasts.
Autorzy:: Biçer A; Department of Biomedical Sciences, University of Barcelona-IDIBAPS (Institut d'investigacions Biomèdiques August Pi i Sunyer), Barcelona, Spain.
Orlando S; Department of Biomedical Sciences, University of Barcelona-IDIBAPS (Institut d'investigacions Biomèdiques August Pi i Sunyer), Barcelona, Spain.
Islam ABMMK; Department of Genetic Engineering and Biotechnology, University of Dhaka, Dhaka, Bangladesh.
Gallastegui E; Department of Biomedical Sciences, University of Barcelona-IDIBAPS (Institut d'investigacions Biomèdiques August Pi i Sunyer), Barcelona, Spain.
Besson A; INSERM UMR1037, Cancer Research Center of Toulouse, Toulouse, France.; Université de Toulouse, Toulouse, France.; CNRS ERL5294, Toulouse, France.
Aligué R; Department of Biomedical Sciences, University of Barcelona-IDIBAPS (Institut d'investigacions Biomèdiques August Pi i Sunyer), Barcelona, Spain.
Bachs O; Department of Biomedical Sciences, University of Barcelona-IDIBAPS (Institut d'investigacions Biomèdiques August Pi i Sunyer), Barcelona, Spain.
Pujol MJ; Department of Biomedical Sciences, University of Barcelona-IDIBAPS (Institut d'investigacions Biomèdiques August Pi i Sunyer), Barcelona, Spain.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2017 Nov 20; Vol. 12 (11), pp. e0187891. Date of Electronic Publication: 2017 Nov 20 (Print Publication: 2017).
Typ publikacji:: Journal Article
MeSH Terms:: Genome*
Transcription, Genetic*
Chromatin/*chemistry
Cyclin-Dependent Kinase Inhibitor p27/*genetics
DNA, Intergenic/*genetics
Fibroblasts/*metabolism
Animals ; Binding Sites ; Cell Adhesion ; Chromatin/metabolism ; Chromatin Immunoprecipitation ; Chromosome Mapping ; Cyclin-Dependent Kinase Inhibitor p27/metabolism ; DNA, Intergenic/metabolism ; Embryo, Mammalian ; Fibroblasts/cytology ; Gene Expression Regulation ; Gene Ontology ; HCT116 Cells ; Humans ; Mice ; Molecular Sequence Annotation ; Primary Cell Culture ; Promoter Regions, Genetic ; Protein Binding ; Sequence Analysis, DNA ; Signal Transduction

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Skocz do pozycji: 12.

Tytuł:: Repression of Human T-lymphotropic virus type 1 Long Terminal Repeat sense transcription by Sp1 recruitment to novel Sp1 binding sites.
Autorzy:: Fauquenoy S; Service of Molecular Virology, Department of Molecular Biology (DBM), Université Libre de Bruxelles (ULB), Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium.
Robette G; Service of Molecular Virology, Department of Molecular Biology (DBM), Université Libre de Bruxelles (ULB), Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium.
Kula A; Service of Molecular Virology, Department of Molecular Biology (DBM), Université Libre de Bruxelles (ULB), Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium.
Vanhulle C; Service of Molecular Virology, Department of Molecular Biology (DBM), Université Libre de Bruxelles (ULB), Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium.
Bouchat S; Service of Molecular Virology, Department of Molecular Biology (DBM), Université Libre de Bruxelles (ULB), Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium.
Delacourt N; Service of Molecular Virology, Department of Molecular Biology (DBM), Université Libre de Bruxelles (ULB), Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium.
Rodari A; Service of Molecular Virology, Department of Molecular Biology (DBM), Université Libre de Bruxelles (ULB), Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium.
Marban C; Biomaterials and Bioengineering, Inserm UMR 1121, Faculty of Dentistry, University of Strasbourg, France.
Schwartz C; Institut Universitaire de Technologie Louis Pasteur, University of Strasbourg, Schiltigheim, France.; Laboratory of Dynamic of Host-Pathogen Interactions (DHPI), EA7292, University of Strasbourg, Strasbourg, France.
Burny A; Laboratory of Experimental Hematology, Institut Jules Bordet, Université Libre de Bruxelles (ULB), Brussels, Belgium.
Rohr O; Institut Universitaire de Technologie Louis Pasteur, University of Strasbourg, Schiltigheim, France.; Laboratory of Dynamic of Host-Pathogen Interactions (DHPI), EA7292, University of Strasbourg, Strasbourg, France.
Van Driessche B; Service of Molecular Virology, Department of Molecular Biology (DBM), Université Libre de Bruxelles (ULB), Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium.
Van Lint C; Service of Molecular Virology, Department of Molecular Biology (DBM), Université Libre de Bruxelles (ULB), Rue des Professeurs Jeener et Brachet 12, 6041 Gosselies, Belgium.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2017 Mar 03; Vol. 7, pp. 43221. Date of Electronic Publication: 2017 Mar 03.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Epigenetic Repression*
Host-Pathogen Interactions*
Terminal Repeat Sequences*
Transcription, Genetic*
Human T-lymphotropic virus 1/*genetics
Human T-lymphotropic virus 1/*growth & development
Sp1 Transcription Factor/*metabolism
Binding Sites ; Chromatin Immunoprecipitation ; HEK293 Cells ; Humans ; Jurkat Cells ; Protein Binding ; Sp3 Transcription Factor/metabolism

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Skocz do pozycji: 13.

Tytuł:: Distributed gene expression modelling for exploring variability in epigenetic function.
Autorzy:: Budden DM; Massachusetts Institute of Technology, Computer Science and Artificial Intelligence Laboratory, Cambridge, 02139, USA. .; Systems Biology Laboratory, Melbourne School of Engineering, the University of Melbourne, Parkville, 3010, Australia. .
Crampin EJ; Systems Biology Laboratory, Melbourne School of Engineering, the University of Melbourne, Parkville, 3010, Australia.; ARC Centre of Excellence in Convergent Bio-Nano Science and Technology, Parkville, 3010, Australia.; Department of Mathematics and Statistics, the University of Melbourne, Parkville, 3010, Australia.; School of Medicine, the University of Melbourne, Parkville, 3010, Australia.; Pokaż więcej
Źródło:: BMC bioinformatics [BMC Bioinformatics] 2016 Nov 05; Vol. 17 (1), pp. 446. Date of Electronic Publication: 2016 Nov 05.
Typ publikacji:: Journal Article
MeSH Terms:: Epigenomics*
Gene Expression Regulation, Neoplastic*
Computational Biology/*methods
Histones/*genetics
Neoplasms/*genetics
Transcription, Genetic/*genetics
Chromatin Immunoprecipitation/methods ; Gene Expression Profiling ; Genome, Human ; High-Throughput Nucleotide Sequencing/methods ; Histones/metabolism ; Humans ; Sequence Analysis, DNA/methods

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Skocz do pozycji: 14.

Tytuł:: metagene Profiles Analyses Reveal Regulatory Element's Factor-Specific Recruitment Patterns.
Autorzy:: Joly Beauparlant C; Centre de Recherche du CHU de Québec - Université Laval, Québec, Québec, Canada.; Département de Médecine Moléculaire, Faculté de médecine, Québec, Canada.
Lamaze FC; Centre de Recherche du CHU de Québec - Université Laval, Québec, Québec, Canada.; Centre de Recherche sur le Cancer de l'Université Laval, Québec, Québec, Canada.
Deschênes A; Centre de Recherche du CHU de Québec - Université Laval, Québec, Québec, Canada.
Samb R; Centre de Recherche du CHU de Québec - Université Laval, Québec, Québec, Canada.
Lemaçon A; Centre de Recherche du CHU de Québec - Université Laval, Québec, Québec, Canada.
Belleau P; Centre de Recherche du CHU de Québec - Université Laval, Québec, Québec, Canada.
Bilodeau S; Centre de Recherche du CHU de Québec - Université Laval, Québec, Québec, Canada.; Centre de Recherche sur le Cancer de l'Université Laval, Québec, Québec, Canada.; Département de Biologie Moléculaire, Biochimie Médicale et Pathologie, Faculté de médecine, Québec, Canada.
Droit A; Centre de Recherche du CHU de Québec - Université Laval, Québec, Québec, Canada.; Département de Médecine Moléculaire, Faculté de médecine, Québec, Canada.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2016 Aug 18; Vol. 12 (8), pp. e1004751. Date of Electronic Publication: 2016 Aug 18 (Print Publication: 2016).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Chromatin Immunoprecipitation/*methods
Gene Expression Profiling/*methods
Metagenomics/*methods
Regulatory Sequences, Nucleic Acid/*genetics
Transcription, Genetic/*genetics
Algorithms ; B-Lymphocytes/metabolism ; Cell Line ; High-Throughput Nucleotide Sequencing ; Humans ; Software

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Skocz do pozycji: 15.

Tytuł:: RUNX2 controls human IPO8 basal transcription in Saos-2 cells.
Autorzy:: Xiong J; Department of Pharmacology, College of Basic Medical Science, Jiujiang University, Jiujiang, Jiangxi 332000, P.R. China.
Hu Z; Department of Pharmacology, College of Basic Medical Science, Jiujiang University, Jiujiang, Jiangxi 332000, P.R. China.
Wang T; Department of Pharmacology, College of Basic Medical Science, Jiujiang University, Jiujiang, Jiangxi 332000, P.R. China.
Xu X; Department of Pharmacology, College of Basic Medical Science, Jiujiang University, Jiujiang, Jiangxi 332000, P.R. China.
Liu J; Key Laboratory of Jiangxi for the Systems Bio‑medicine, Jiujiang University, Jiujiang, Jiangxi 332000, P.R. China.
Wu P; Key Laboratory of Jiangxi for the Systems Bio‑medicine, Jiujiang University, Jiujiang, Jiangxi 332000, P.R. China.
Che X; Department of Pharmacology, College of Basic Medical Science, Jiujiang University, Jiujiang, Jiangxi 332000, P.R. China.
Li W; Key Laboratory of Jiangxi for the Systems Bio‑medicine, Jiujiang University, Jiujiang, Jiangxi 332000, P.R. China.; Pokaż więcej
Źródło:: Molecular medicine reports [Mol Med Rep] 2016 Aug; Vol. 14 (2), pp. 1418-24. Date of Electronic Publication: 2016 Jun 01.
Typ publikacji:: Journal Article
MeSH Terms:: Gene Expression Regulation, Neoplastic*
Transcription, Genetic*
Core Binding Factor Alpha 1 Subunit/*metabolism
beta Karyopherins/*genetics
Binding Sites ; Bone Neoplasms/genetics ; Bone Neoplasms/metabolism ; Cell Line, Tumor ; Chromatin Immunoprecipitation ; Humans ; Mesenchymal Stem Cells/metabolism ; Osteosarcoma/genetics ; Osteosarcoma/metabolism ; Promoter Regions, Genetic ; Protein Binding

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Skocz do pozycji: 16.

Tytuł:: Phylogenetic and Epigenetic Footprinting of the Putative Enhancers of the Peg3 Domain.
Autorzy:: Kim J; Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, United States of America.
Ye A; Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2016 Apr 22; Vol. 11 (4), pp. e0154216. Date of Electronic Publication: 2016 Apr 22 (Print Publication: 2016).
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:: Phylogeny*
Transcription, Genetic*
Enhancer Elements, Genetic/*genetics
Epigenomics/*methods
Kruppel-Like Transcription Factors/*genetics
Animals ; Base Sequence ; Binding Sites/genetics ; Chromatin Immunoprecipitation ; DNA Methylation ; E-Box Elements/genetics ; Female ; Gene Expression Regulation ; Humans ; Kruppel-Like Transcription Factors/classification ; Mice, Inbred C57BL ; MyoD Protein/metabolism ; Nucleotide Motifs/genetics ; Protein Binding ; Regulatory Sequences, Nucleic Acid/genetics ; Sequence Homology, Amino Acid

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Skocz do pozycji: 17.

Tytuł:: Ceramide Induces Human Hepcidin Gene Transcription through JAK/STAT3 Pathway.
Autorzy:: Lu S; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, 985870 Nebraska Medical Center, Omaha, NE, 68198-5870, United States of America.
Natarajan SK; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, 985870 Nebraska Medical Center, Omaha, NE, 68198-5870, United States of America.
Mott JL; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, 985870 Nebraska Medical Center, Omaha, NE, 68198-5870, United States of America.
Kharbanda KK; Division of Gastroenterology and Hepatology, Department of Internal Medicine, University of Nebraska Medical Center, 982000 Nebraska Medical Center, Omaha, NE, 68198-2000, United States of America.
Harrison-Findik DD; Division of Gastroenterology and Hepatology, Department of Internal Medicine, University of Nebraska Medical Center, 982000 Nebraska Medical Center, Omaha, NE, 68198-2000, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2016 Jan 25; Vol. 11 (1), pp. e0147474. Date of Electronic Publication: 2016 Jan 25 (Print Publication: 2016).
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:: Ceramides/*pharmacology
Hepcidins/*biosynthesis
Janus Kinases/*physiology
STAT3 Transcription Factor/*physiology
Signal Transduction/*drug effects
Transcription, Genetic/*drug effects
Anthracenes/pharmacology ; Chromatin Immunoprecipitation ; Dactinomycin/pharmacology ; Hep G2 Cells ; Hepcidins/genetics ; Humans ; Iron/metabolism ; Liver/metabolism ; Mutagenesis, Site-Directed ; NF-kappa B/metabolism ; Non-alcoholic Fatty Liver Disease/epidemiology ; Non-alcoholic Fatty Liver Disease/etiology ; Non-alcoholic Fatty Liver Disease/metabolism ; Obesity/complications ; Obesity/metabolism ; Phosphorylation/drug effects ; Prevalence ; Promoter Regions, Genetic/drug effects ; Promoter Regions, Genetic/genetics ; Protein Kinase Inhibitors/pharmacology ; Protein Processing, Post-Translational/drug effects ; RNA Interference ; RNA, Messenger/biosynthesis ; RNA, Messenger/genetics ; RNA, Small Interfering/genetics ; Recombinant Fusion Proteins/genetics ; Recombinant Fusion Proteins/metabolism ; Response Elements ; STAT3 Transcription Factor/antagonists & inhibitors ; STAT3 Transcription Factor/genetics

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Skocz do pozycji: 18.

Tytuł:: The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection.
Autorzy:: Roquis D; Université de Perpignan Via Domitia, Perpignan, France; CNRS, UMR 5244, Interactions Hôtes-Pathogènes-Environnements (IHPE), Perpignan, France.
Lepesant JM; Université de Perpignan Via Domitia, Perpignan, France; CNRS, UMR 5244, Interactions Hôtes-Pathogènes-Environnements (IHPE), Perpignan, France.
Picard MA; Université de Perpignan Via Domitia, Perpignan, France; CNRS, UMR 5244, Interactions Hôtes-Pathogènes-Environnements (IHPE), Perpignan, France.
Freitag M; Oregon State University, Corvallis, Oregon, United States of America.
Parrinello H; CNRS, GenomiX IBiSA, Montpellier, France.
Groth M; Leibniz Institute for Age Research-Fritz Lipmann Institute, Jena, Germany.
Emans R; Université de Perpignan Via Domitia, Perpignan, France; CNRS, UMR 5244, Interactions Hôtes-Pathogènes-Environnements (IHPE), Perpignan, France.
Cosseau C; Université de Perpignan Via Domitia, Perpignan, France; CNRS, UMR 5244, Interactions Hôtes-Pathogènes-Environnements (IHPE), Perpignan, France.
Grunau C; Université de Perpignan Via Domitia, Perpignan, France; CNRS, UMR 5244, Interactions Hôtes-Pathogènes-Environnements (IHPE), Perpignan, France.; Pokaż więcej
Źródło:: PLoS neglected tropical diseases [PLoS Negl Trop Dis] 2015 Aug 25; Vol. 9 (8), pp. e0003853. Date of Electronic Publication: 2015 Aug 25 (Print Publication: 2015).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Transcription, Genetic*
Cercaria/*genetics
Schistosoma mansoni/*genetics
Acetylation ; Animals ; Cercaria/growth & development ; Cercaria/metabolism ; Chromatin Immunoprecipitation ; Female ; Gastropoda ; Genome, Helminth ; Helminth Proteins/genetics ; Helminth Proteins/metabolism ; Histones/genetics ; Humans ; Male ; Methylation ; Mice ; Schistosoma mansoni/growth & development ; Schistosoma mansoni/metabolism ; Snails/parasitology

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Skocz do pozycji: 19.

Tytuł:: The Role of α-CTD in the Genome-Wide Transcriptional Regulation of the Bacillus subtilis Cells.
Autorzy:: Murayama S; Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5, Takayama, Ikoma, Nara 630-0192, Japan.
Ishikawa S; Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5, Takayama, Ikoma, Nara 630-0192, Japan.
Chumsakul O; Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5, Takayama, Ikoma, Nara 630-0192, Japan.
Ogasawara N; Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5, Takayama, Ikoma, Nara 630-0192, Japan.
Oshima T; Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5, Takayama, Ikoma, Nara 630-0192, Japan.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2015 Jul 08; Vol. 10 (7), pp. e0131588. Date of Electronic Publication: 2015 Jul 08 (Print Publication: 2015).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Genome, Bacterial*
Transcription, Genetic*/drug effects
Bacillus subtilis/*genetics
DNA-Directed RNA Polymerases/*metabolism
Bacillus subtilis/drug effects ; Bacillus subtilis/growth & development ; Carbon/pharmacology ; Chromatin Immunoprecipitation ; DNA, Bacterial/metabolism ; DNA-Directed RNA Polymerases/chemistry ; DNA-Directed RNA Polymerases/genetics ; Down-Regulation/drug effects ; Down-Regulation/genetics ; Gene Expression Regulation, Bacterial/drug effects ; Genes, Bacterial ; Genetic Loci ; Isopropyl Thiogalactoside/metabolism ; Multiprotein Complexes/metabolism ; Promoter Regions, Genetic ; Protein Binding/drug effects ; Ribosomes/drug effects ; Ribosomes/metabolism ; Sigma Factor/metabolism ; Transcription Elongation, Genetic/drug effects ; Transcriptional Activation/drug effects ; Transcriptional Activation/genetics ; Transcriptome/genetics ; Up-Regulation/drug effects ; Up-Regulation/genetics ; Xylose/metabolism

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Skocz do pozycji: 20.

Tytuł:: An Ikaros Promoter Element with Dual Epigenetic and Transcriptional Activities.
Autorzy:: Perotti EA; Cutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA 02129, United States of America.
Georgopoulos K; Cutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA 02129, United States of America.
Yoshida T; Cutaneous Biology Research Center, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA 02129, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2015 Jul 02; Vol. 10 (7), pp. e0131568. Date of Electronic Publication: 2015 Jul 02 (Print Publication: 2015).
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:: Epigenesis, Genetic*
Promoter Regions, Genetic*
Transcription, Genetic*
Ikaros Transcription Factor/*genetics
Amino Acid Motifs ; Animals ; Base Sequence ; Binding Sites ; Chromatin Immunoprecipitation ; Female ; Flow Cytometry ; Gene Deletion ; Genes, Reporter ; Green Fluorescent Proteins/metabolism ; Humans ; Ikaros Transcription Factor/metabolism ; Lymphocytes/cytology ; Male ; Mice ; Mice, Inbred C3H ; Mice, Inbred C57BL ; Molecular Sequence Data ; Protein Binding ; Thymocytes/metabolism

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