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Title:
Repeated co-option of HMG-box genes for sex determination in brown algae and animals.
Authors:
Luthringer R; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Raphalen M; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Guerra C; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Colin S; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Martinho C; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Zheng M; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Hoshino M; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.; Research Center for Inland Seas, Kobe University, Kobe 658-0022, Japan.
Badis Y; Roscoff Biological Station, CNRS-Sorbonne University, Place Georges Teissier, 29680 Roscoff, France.
Lipinska AP; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Haas FB; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Barrera-Redondo J; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Alva V; Department of Protein Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Coelho SM; Department of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
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Source:
Science (New York, N.Y.) [Science] 2024 Mar 22; Vol. 383 (6689), pp. eadk5466. Date of Electronic Publication: 2024 Mar 22.
Publication Type:
Journal Article
MeSH Terms:
Phaeophyceae*/genetics
Sex Chromosomes*/genetics
Sex Determination Processes*/genetics
HMGB Proteins*/genetics
Edible Seaweeds*/genetics
Laminaria*/genetics
Animals ; Biological Evolution ; Y Chromosome ; Chromosomes, Plant/genetics ; HMG-Box Domains ; Pollen/genetics
SCR Organism:
Laminaria digitata
Academic Journal
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Title:
Engineering better artificial chromosomes.
Authors:
Dawe RK; Department of Genetics, University of Georgia, Athens, GA, USA.; Department of Plant Biology, University of Georgia, Athens, GA, USA.
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Source:
Science (New York, N.Y.) [Science] 2024 Mar 22; Vol. 383 (6689), pp. 1292-1293. Date of Electronic Publication: 2024 Mar 21.
Publication Type:
Journal Article; Comment
MeSH Terms:
Chromosomes, Artificial, Human*/genetics
Humans ; Chromosomes, Artificial/genetics ; Saccharomyces cerevisiae/genetics
Academic Journal
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Title:
Efficient formation of single-copy human artificial chromosomes.
Authors:
Gambogi CW; Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Graduate Program in Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Penn Center for Genome Integrity, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Birchak GJ; Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Graduate Program in Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Penn Center for Genome Integrity, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Graduate Program in Cell and Molecular Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Mer E; Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Graduate Program in Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Penn Center for Genome Integrity, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Brown DM; J. Craig Venter Institute, La Jolla, CA 92037, USA.
Yankson G; Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.
Kixmoeller K; Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Graduate Program in Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Penn Center for Genome Integrity, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Gavade JN; Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Penn Center for Genome Integrity, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Espinoza JL; J. Craig Venter Institute, La Jolla, CA 92037, USA.
Kashyap P; Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Penn Center for Genome Integrity, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Dupont CL; J. Craig Venter Institute, La Jolla, CA 92037, USA.
Logsdon GA; Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Graduate Program in Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Penn Center for Genome Integrity, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Biology, Molecular Genetics, Technical University Darmstadt, 64289 Darmstadt, Germany.
Heun P; Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.; Department of Biology, Molecular Genetics, Technical University Darmstadt, 64289 Darmstadt, Germany.
Glass JI; J. Craig Venter Institute, La Jolla, CA 92037, USA.
Black BE; Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Graduate Program in Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Penn Center for Genome Integrity, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Graduate Program in Cell and Molecular Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
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Source:
Science (New York, N.Y.) [Science] 2024 Mar 22; Vol. 383 (6689), pp. 1344-1349. Date of Electronic Publication: 2024 Mar 21.
Publication Type:
Journal Article
MeSH Terms:
Centromere*/genetics
Centromere*/metabolism
Chromosomes, Artificial, Human*/genetics
Chromosomes, Artificial, Human*/metabolism
Epigenesis, Genetic*
Humans ; Chromatin/metabolism ; Saccharomycetales/genetics
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
A rapid approach for sex assignment by RAD-seq using a reference genome.
Authors:
Peralta DM; Grupo de Investigación en Ecología Molecular, Instituto de Ecología y Desarrollo Sustentable (INEDES-CONICET-UNLu-CIC), Luján, Argentina.; Departamento de Ecología de la Diversidad, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, México.
Túnez JI; Grupo de Investigación en Ecología Molecular, Instituto de Ecología y Desarrollo Sustentable (INEDES-CONICET-UNLu-CIC), Luján, Argentina.; Departamento de Ciencias Básicas, Universidad Nacional de Luján, Luján, Argentina.
Rodríguez Cruz UE; Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, México.
Ceballos SG; Instituto de Ciencias Polares, Ambiente y Recursos Naturales, Universidad Nacional de Tierra del Fuego, Ushuaia, Argentina.; Centro Austral de Investigaciones Científicas (CADIC-CONICET), Ushuaia, Argentina.
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Source:
PloS one [PLoS One] 2024 Apr 05; Vol. 19 (4), pp. e0297987. Date of Electronic Publication: 2024 Apr 05 (Print Publication: 2024).
Publication Type:
Journal Article
MeSH Terms:
Genome*/genetics
Sex Chromosomes*/genetics
Humans ; Animals ; Reproducibility of Results ; Y Chromosome ; Genomics ; Mammals/genetics
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
Forensic autosomal and gonosomal short tandem repeat marker reference database for populations in Burkina Faso.
Authors:
Zeye MMJ; Department of Medical Parasitology, School of Basic Medical Sciences, Central South University, No. 172, Tongzipo Road, Changsha, 410013, Hunan, People's Republic of China.; Laboratory of Molecular Biology and Genetics (LMBG) (Labiogene), University Joseph KI-ZERBO, CERBA/LABIOGENE, 01, BP 364, Ouagadougou 01, Burkina Faso.; Human Evolution, Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
Ouedraogo SY; Department of Oncology, School of Clinical Medicine, Shandong Cancer Hospital, Shandong First Medical University, Shandong Academy of Medical Sciences, 6699 Qingdao Road, Huaiyin District, Jinan, 250000, Shandong, People's Republic of China.; Laboratory of Molecular Biology and Genetics (LMBG) (Labiogene), University Joseph KI-ZERBO, CERBA/LABIOGENE, 01, BP 364, Ouagadougou 01, Burkina Faso.
Bado P; Laboratory of Molecular Biology and Genetics (LMBG) (Labiogene), University Joseph KI-ZERBO, CERBA/LABIOGENE, 01, BP 364, Ouagadougou 01, Burkina Faso.
Zoure AA; Department of Biomedical and Public Health, Research Institute of Health Sciences (IRSS/CNRST), 03 BP 7192, Ouagadougou 01, Burkina Faso.
Djigma FW; Laboratory of Molecular Biology and Genetics (LMBG) (Labiogene), University Joseph KI-ZERBO, CERBA/LABIOGENE, 01, BP 364, Ouagadougou 01, Burkina Faso.
Wu X; Department of Medical Parasitology, School of Basic Medical Sciences, Central South University, No. 172, Tongzipo Road, Changsha, 410013, Hunan, People's Republic of China. .
Simpore J; Laboratory of Molecular Biology and Genetics (LMBG) (Labiogene), University Joseph KI-ZERBO, CERBA/LABIOGENE, 01, BP 364, Ouagadougou 01, Burkina Faso. .
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Source:
Scientific reports [Sci Rep] 2024 Mar 28; Vol. 14 (1), pp. 7369. Date of Electronic Publication: 2024 Mar 28.
Publication Type:
Journal Article
MeSH Terms:
Genetics, Population*
Chromosomes, Human, X*/genetics
Male ; Humans ; Female ; Gene Frequency ; Burkina Faso ; Microsatellite Repeats/genetics ; China
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness.
Authors:
Chowdhury HMAM; Department of Computer Science, University of Colorado at Colorado Springs, 1420 Austin Bluffs Pkwy, Colorado Springs, CO, 80918, USA.
Boult T; Department of Computer Science, University of Colorado at Colorado Springs, 1420 Austin Bluffs Pkwy, Colorado Springs, CO, 80918, USA.
Oluwadare O; Department of Computer Science, University of Colorado at Colorado Springs, 1420 Austin Bluffs Pkwy, Colorado Springs, CO, 80918, USA. .; Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus, Aurora, CO, USA. .
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Source:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 21; Vol. 25 (1), pp. 123. Date of Electronic Publication: 2024 Mar 21.
Publication Type:
Journal Article
MeSH Terms:
Chromatin*/genetics
Chromosomes*
DNA ; Chromatin Immunoprecipitation Sequencing ; Algorithms
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
The regulation of methylation on the Z chromosome and the identification of multiple novel Male Hyper-Methylated regions in the chicken.
Authors:
Höglund A; Science for Life Laboratory, Department of Environmental Science, Stockholm University, Stockholm, Sweden.
Henriksen R; AVIAN Behavioural Genomics and Physiology Group, Linköping University, Linköping, Sweden.
Churcher AM; NBIS, Umeå University, Department of Molecular Biology, Umeå, Sweden.
Guerrero-Bosagna CM; Physiology and Environmental Toxicology Program, Department of Organismal Biology, Uppsala University, Uppsala, Sweden.
Martinez-Barrio A; NBIS, Uppsala University, SciLifeLab, Uppsala, Sweden.
Johnsson M; Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Jensen P; AVIAN Behavioural Genomics and Physiology Group, Linköping University, Linköping, Sweden.
Wright D; AVIAN Behavioural Genomics and Physiology Group, Linköping University, Linköping, Sweden.
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Source:
PLoS genetics [PLoS Genet] 2024 Mar 08; Vol. 20 (3), pp. e1010719. Date of Electronic Publication: 2024 Mar 08 (Print Publication: 2024).
Publication Type:
Journal Article
MeSH Terms:
Chickens*/genetics
Sex Chromosomes*/genetics
Animals ; Male ; DNA Methylation/genetics ; Dosage Compensation, Genetic ; Genome ; Mammals/genetics
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
Loss of chromosome Y in regulatory T cells.
Authors:
Mattisson J; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Halvardson J; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Davies H; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Bruhn-Olszewska B; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Olszewski P; 3P-Medicine Laboratory, Medical University of Gdańsk, Gdańsk, Poland.
Danielsson M; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Bjurling J; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Lindberg A; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Zaghlool A; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Rychlicka-Buniowska E; 3P-Medicine Laboratory, Medical University of Gdańsk, Gdańsk, Poland.
Dumanski JP; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.; 3P-Medicine Laboratory, Medical University of Gdańsk, Gdańsk, Poland.
Forsberg LA; Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.; The Beijer Laboratory, Uppsala University, Uppsala, Sweden.
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Source:
BMC genomics [BMC Genomics] 2024 Mar 05; Vol. 25 (1), pp. 243. Date of Electronic Publication: 2024 Mar 05.
Publication Type:
Journal Article
MeSH Terms:
Chromosomes, Human, Y*/genetics
Neoplasms*
Humans ; Male ; T-Lymphocytes, Regulatory ; Leukocytes, Mononuclear ; Mosaicism
Academic Journal
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Title:
Genotype data for 60 SNP genetic markers associated with eye, hair, skin color, ABO blood group, sex, core Y-chromosome haplogroups in Kazakh population.
Authors:
Bukayev A; National Center for Biotechnology, Astana, 010000, Republic of Kazakhstan.
Aidarov B; National Center for Biotechnology, Astana, 010000, Republic of Kazakhstan.
Fesenko D; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991, Russia.
Saidamarova V; Karaganda Academy of the Ministry of Internal Affairs of the Republic of Kazakhstan Named After Barimbek Beisenov, Karaganda, 100000, Republic of Kazakhstan.
Ivanovsky I; DNA Research Center, LLC, Khimki, 141402, Russia.
Maltseva E; Almaty Branch of the National Center for Biotechnology, Almaty, 050054, Kazakhstan.; Tethys Scientific Society, Almaty, 050063, Kazakhstan.
Naizabayeva D; Almaty Branch of the National Center for Biotechnology, Almaty, 050054, Kazakhstan.
Bukayeva A; National Center for Biotechnology, Astana, 010000, Republic of Kazakhstan.
Faizov B; National Center for Biotechnology, Astana, 010000, Republic of Kazakhstan.
Pylev V; Bochkov Research Centre of Medical Genetics, Moscow, 115522, Russia.
Darmenov A; Karaganda Academy of the Ministry of Internal Affairs of the Republic of Kazakhstan Named After Barimbek Beisenov, Karaganda, 100000, Republic of Kazakhstan.
Skiba Y; Almaty Branch of the National Center for Biotechnology, Almaty, 050054, Kazakhstan.
Balanovska E; Bochkov Research Centre of Medical Genetics, Moscow, 115522, Russia.
Zhabagin M; National Center for Biotechnology, Astana, 010000, Republic of Kazakhstan. .
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Source:
BMC research notes [BMC Res Notes] 2024 Feb 18; Vol. 17 (1), pp. 51. Date of Electronic Publication: 2024 Feb 18.
Publication Type:
Journal Article
MeSH Terms:
ABO Blood-Group System*/genetics
Central Asian People*/genetics
Chromosomes, Human, Y*/genetics
Haplotypes*/genetics
Pigmentation*/genetics
Humans ; Male ; DNA/genetics ; Genetic Markers ; Genetics, Population ; Genotype ; Hair ; Polymorphism, Single Nucleotide/genetics ; Skin Pigmentation/genetics ; Genetic Variation/genetics
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
Chromosomes of Asian cyprinid fishes: Novel insight into the chromosomal evolution of Labeoninae (Teleostei, Cyprinidae).
Authors:
Khensuwan S; Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen, Thailand.
de Menezes Cavalcante Sassi F; Departamento de Genética e Evolução, Laboratório de Citogenética de Peixes, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil.
Rosa de Moraes RL; Departamento de Genética e Evolução, Laboratório de Citogenética de Peixes, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil.
Rab P; Institute of Animal Physiology and Genetics, Laboratory of Fish Genetics, Czech Academy of Sciences, Rumburská, Liběchov, Czech Republic.
Liehr T; Institute of Human Genetics, University Hospital Jena, Jena, Germany.
Supiwong W; Faculty of Interdisciplinary Studies, Khon Kaen University, Nong Khai Campus, Muang, Nong Khai, Thailand.
Seetapan K; School of Agriculture and Natural Resources, University of Phayao, Tumbol Maeka, Muang, Phayao, Thailand.
Tanomtong A; Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen, Thailand.
Tantisuwichwong N; Department of Biology, Faculty of Science, Khon Kaen University, Muang, Khon Kaen, Thailand.
Arunsang S; Program in Animal Science, Faculty of Agricultural Technology and Agro-Industry, Rajamangala University of Technology Suvarnabhumi, Phra Nakhon Si Ayutthaya, Ayutthaya, Thailand.
Buasriyot P; Faculty of Science and Technology, Rajamangala University of Technology Suvarnabhumi, Mueang Nonthaburi, Nonthaburi, Thailand.
Tongnunui S; Department of Conservation Biology, Mahidol University, Kanchanburi Campus, Sai Yok, Kanchanaburi Province, Thailand.
Cioffi MB; Departamento de Genética e Evolução, Laboratório de Citogenética de Peixes, Universidade Federal de São Carlos, São Carlos, São Paulo, Brazil.
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Source:
PloS one [PLoS One] 2024 Feb 07; Vol. 19 (2), pp. e0292689. Date of Electronic Publication: 2024 Feb 07 (Print Publication: 2024).
Publication Type:
Journal Article
MeSH Terms:
Chromosomes*/genetics
Cyprinidae*/genetics
Animals ; Phylogeny ; Karyotype ; Chromosome Aberrations ; DNA, Ribosomal/genetics ; Thailand ; Evolution, Molecular
Academic Journal
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Title:
Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts.
Authors:
Hirata Y; Faculty of Engineering, Information and Systems, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8573, Japan. .
Oda AH; Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Meguro-ku, Tokyo, 153-8902, Japan.
Motono C; Cellular and Molecular Biotechnology Research Institute, National Institute of Advanced Industrial Science and Technology, Koto-ku, Tokyo, 135-0064, Japan.; Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), National Institute of Advanced Industrial Science and Technology (AIST), Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo, 169-0072, Japan.
Shiro M; Mathematical Neuroscience Research Group, Human Informatics and Interaction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, 305-8568, Japan.
Ohta K; Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Meguro-ku, Tokyo, 153-8902, Japan.; Research Center for Complex Systems Biology, Universal Biology Institute, 3-8-1 Komaba, Meguro-ku, Tokyo, 153-8902, Japan.
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Source:
Scientific reports [Sci Rep] 2022 Jul 11; Vol. 12 (1), pp. 11757. Date of Electronic Publication: 2022 Jul 11.
Publication Type:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromosomes*
Diploidy*
Algorithms ; Alleles ; Chromosome Structures ; Chromosomes, Human/genetics ; Humans
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
Irreproducible results and unsupported conclusions in Ahmad et al. [BMC genomics (2020) 21:656].
Authors:
Ruiz-Ruano FJ; School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TU, UK.; Department of Organismal Biology - Systematic Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, SE-752 36, Sweden.; Centre for Molecular Biodiversity Research, Leibniz Institute for the Analysis of Biodiversity Change, Adenauerallee 127, 53113, Bonn, Germany.
Camacho JPM; Departamento de Genética, Universidad de Granada, Granada, 18071, Spain. .
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Source:
BMC genomics [BMC Genomics] 2023 Dec 18; Vol. 24 (1), pp. 778. Date of Electronic Publication: 2023 Dec 18.
Publication Type:
Journal Article; Comment
MeSH Terms:
Genomics*/methods
Chromosomes*
Biological Evolution
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
Delineating the dispersal of Y-chromosome sub-haplogroup O2a2b-P164 among Austronesian-speaking populations.
Authors:
Luis JR; Area de Antropología, Facultad de Biología, Universidad de Santiago de Compostela, Campus Sur s/n, 15782, Santiago de Compostela, Spain.
Palencia-Madrid L; BIOMICs Research Group, Dpto. Z. y Biologia Celular A., Lascaray Research Centre, University of the Basque Country UPV/EHU, 01006, Vitoria-Gasteiz, Spain.
Runfeldt G; FamilyTreeDNA, Gene By Gene, Houston, TX, 77008, USA.
Garcia-Bertrand R; Department of Molecular Biology, Colorado College, 14 East Cache La Poudre Street, Colorado Springs, CO, 80903-3294, USA.
Herrera RJ; Department of Molecular Biology, Colorado College, 14 East Cache La Poudre Street, Colorado Springs, CO, 80903-3294, USA. .
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Source:
Scientific reports [Sci Rep] 2024 Jan 24; Vol. 14 (1), pp. 2066. Date of Electronic Publication: 2024 Jan 24.
Publication Type:
Journal Article
MeSH Terms:
Chromosomes, Human, Y*/genetics
Maori People*
Humans ; Asian People/genetics ; Cognition ; Philippines ; Male
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
Genetic Cause of Hybrid Lethality Observed in Reciprocal Interspecific Crosses between Nicotiana simulans and N. tabacum .
Authors:
Tezuka T; Graduate School of Agriculture, Osaka Metropolitan University, Sakai 599-8531, Osaka, Japan.; Education and Research Field, School of Agriculture, Osaka Metropolitan University, Sakai 599-8531, Osaka, Japan.; Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai 599-8531, Osaka, Japan.; School of Life and Environmental Sciences, Osaka Prefecture University, Sakai 599-8531, Osaka, Japan.
Nagai S; Graduate School of Agriculture, Osaka Metropolitan University, Sakai 599-8531, Osaka, Japan.
Matsuo C; School of Life and Environmental Sciences, Osaka Prefecture University, Sakai 599-8531, Osaka, Japan.
Okamori T; School of Life and Environmental Sciences, Osaka Prefecture University, Sakai 599-8531, Osaka, Japan.
Iizuka T; Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai 599-8531, Osaka, Japan.
Marubashi W; School of Agriculture, Meiji University, Kawasaki 214-8571, Kanagawa, Japan.
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Source:
International journal of molecular sciences [Int J Mol Sci] 2024 Jan 19; Vol. 25 (2). Date of Electronic Publication: 2024 Jan 19.
Publication Type:
Journal Article
MeSH Terms:
Nicotiana*/genetics
Chromosomes, Plant*
Crosses, Genetic ; Hybridization, Genetic ; Seedlings/genetics
Academic Journal
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Title:
An in silico procedure for generating protein-mediated chromatin interaction data and comparison of significant interaction calling methods.
Authors:
Lou S; Interdisciplinary Ph.D. Program in Biostatistics, The Ohio State University, Columbus, OH, United States of America.
Lin S; Interdisciplinary Ph.D. Program in Biostatistics, The Ohio State University, Columbus, OH, United States of America.; Department of Statistics, The Ohio State University, Columbus, OH, United States of America.; Translational Data Analytics Institute, The Ohio State University, Columbus, OH, United States of America.
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Source:
PloS one [PLoS One] 2024 Jan 17; Vol. 19 (1), pp. e0287521. Date of Electronic Publication: 2024 Jan 17 (Print Publication: 2024).
Publication Type:
Journal Article
MeSH Terms:
Chromatin*
Chromosomes*
Sequence Analysis, DNA/methods ; Computer Simulation ; Chromatin Immunoprecipitation Sequencing
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
A20 haploinsufficiency in a neonate caused by a large deletion on chromosome 6q.
Authors:
Zhang F; Department of Neonatology, Hunan Children's Hospital, Changsha, Hunan, China.
Zhang L; Department of Nephrology, Rheumatology and Immunology, Hunan Provincial Key Laboratory of Pediatric Orthopedics, Hunan Children's Hospital, Changsha, Hunan, China. .
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Source:
Pediatric rheumatology online journal [Pediatr Rheumatol Online J] 2024 Jan 05; Vol. 22 (1), pp. 12. Date of Electronic Publication: 2024 Jan 05.
Publication Type:
Case Reports; Journal Article; Review
MeSH Terms:
Haploinsufficiency*/genetics
Chromosomes, Human, Pair 6*/genetics
Sequence Deletion*
Humans ; Infant, Newborn ; Asian People ; Mutation ; Rare Diseases
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
A Million-Cow Validation of a Chromosome 14 Region Interacting with All Chromosomes for Fat Percentage in U.S. Holstein Cows.
Authors:
Prakapenka D; Department of Animal Science, University of Minnesota, Saint Paul, MN 55108, USA.
Liang Z; Department of Animal Science, University of Minnesota, Saint Paul, MN 55108, USA.
Zaabza HB; Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA.
VanRaden PM; Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA.
Van Tassell CP; Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA.
Da Y; Department of Animal Science, University of Minnesota, Saint Paul, MN 55108, USA.
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Source:
International journal of molecular sciences [Int J Mol Sci] 2024 Jan 04; Vol. 25 (1). Date of Electronic Publication: 2024 Jan 04.
Publication Type:
Journal Article
MeSH Terms:
Chromosomes, Human, Pair 14*
Genome-Wide Association Study*
Female ; Humans ; Cattle/genetics ; Animals ; Fertility/genetics ; Lactation ; Phenotype ; NF-kappa B ; Poly(ADP-ribose) Polymerases ; Proto-Oncogene Proteins
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
Diversity of Clinical and Molecular Characteristics in Korean Patients with 16p11.2 Microdeletion Syndrome.
Authors:
Han JY; Department of Pediatrics, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea.
Cho YG; Department of Laboratory Medicine, Jeonbuk National University Medical School and Hospital, Jeonju 54907, Republic of Korea.; Research Institute of Clinical Medicine of Jeonbuk National University-Biomedical Research Institute of Jeonbuk National University Hospital, Jeonju 54907, Republic of Korea.
Jo DS; Research Institute of Clinical Medicine of Jeonbuk National University-Biomedical Research Institute of Jeonbuk National University Hospital, Jeonju 54907, Republic of Korea.; Department of Pediatrics, Jeonbuk National University Medical School and Hospital, Jeonju 54907, Republic of Korea.
Park J; Department of Laboratory Medicine, Jeonbuk National University Medical School and Hospital, Jeonju 54907, Republic of Korea.; Research Institute of Clinical Medicine of Jeonbuk National University-Biomedical Research Institute of Jeonbuk National University Hospital, Jeonju 54907, Republic of Korea.
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Source:
International journal of molecular sciences [Int J Mol Sci] 2023 Dec 23; Vol. 25 (1). Date of Electronic Publication: 2023 Dec 23.
Publication Type:
Journal Article
MeSH Terms:
DNA Copy Number Variations*
Chromosome Deletion*
Chromosomes, Human, Pair 16*/genetics
Genetic Diseases, Inborn*
Humans ; Infant ; Infant, Newborn ; Republic of Korea ; Phenotype ; Developmental Disabilities/genetics ; Intellectual Disability/genetics ; East Asian People
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Title:
4D nucleome equation predicts gene expression controlled by long-range enhancer-promoter interaction.
Authors:
Wang Z; Guangdong Province Key Laboratory of Computational, Sun Yat-sen University, Guangzhou, People's Republic of China.; School of Mathematics, Sun Yat-Sen University, Guangzhou, People's Republic of China.
Luo S; Guangdong Province Key Laboratory of Computational, Sun Yat-sen University, Guangzhou, People's Republic of China.; School of Mathematics, Sun Yat-Sen University, Guangzhou, People's Republic of China.
Zhang Z; Guangdong Province Key Laboratory of Computational, Sun Yat-sen University, Guangzhou, People's Republic of China.; School of Mathematics, Sun Yat-Sen University, Guangzhou, People's Republic of China.
Zhou T; Guangdong Province Key Laboratory of Computational, Sun Yat-sen University, Guangzhou, People's Republic of China.; School of Mathematics, Sun Yat-Sen University, Guangzhou, People's Republic of China.
Zhang J; Guangdong Province Key Laboratory of Computational, Sun Yat-sen University, Guangzhou, People's Republic of China.; School of Mathematics, Sun Yat-Sen University, Guangzhou, People's Republic of China.
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Source:
PLoS computational biology [PLoS Comput Biol] 2023 Dec 18; Vol. 19 (12), pp. e1011722. Date of Electronic Publication: 2023 Dec 18 (Print Publication: 2023).
Publication Type:
Journal Article
MeSH Terms:
Chromatin*/genetics
Chromosomes*
Animals ; Mice ; Promoter Regions, Genetic/genetics ; RNA, Messenger/genetics ; Gene Expression ; Enhancer Elements, Genetic/genetics
Academic Journal
Full Text  Link opens in a new window Full TextDetails
Showing 1-20 from 147684 results

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