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Tytuł:
Concerning the eXclusion in human genomics: the choice of sex chromosome representation in the human genome drastically affects the number of identified variants.
Autorzy:
Pinto BJ; School of Life Sciences, Arizona State University, Tempe, AZ 85282, USA.; Center for Evolution and Medicine, Arizona State University, Tempe, AZ 85282, USA.; Department of Zoology, Milwaukee Public Museum, Milwaukee, WI 53233, USA.
O'Connor B; Sage Bionetworks, Seattle, WA 98121, USA.
Schatz MC; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA.
Zarate S; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA.
Wilson MA; School of Life Sciences, Arizona State University, Tempe, AZ 85282, USA.; Center for Evolution and Medicine, Arizona State University, Tempe, AZ 85282, USA.; The Biodesign Center for Mechanisms of Evolution, Arizona State University, Tempe, AZ 85282, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Sep 30; Vol. 13 (10).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Human*
Sex Chromosomes*/genetics
Humans ; Female ; Male ; Pilot Projects ; Genomics ; X Chromosome
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Chromosomal-level reference genome of a wild North American mallard (Anas platyrhynchos).
Autorzy:
Lavretsky P; Department of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA.
Hernández F; Department of Biological Sciences, University of Texas at El Paso, El Paso, TX 79968, USA.
Swale T; Cantata Bio, 100 Enterprise Way Suite A101, Scotts Valley, CA 95066.
Mohl JE; Department of Mathematical Sciences, University of Texas at El Paso, El Paso, TX 79968, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Sep 30; Vol. 13 (10).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Genome*
Chromosomes*
Animals ; Humans ; Ducks/genetics ; North America
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
FLInt: single shot safe harbor transgene integration via Fluorescent Landmark Interference.
Autorzy:
Malaiwong N; Institut de Ciències Fotòniques (ICFO), 08860 Castelldefels, Spain.
Porta-de-la-Riva M
Krieg M
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 May 02; Vol. 13 (5).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome*
Chromosomes*
Animals ; Transgenes ; Animals, Genetically Modified ; Phenotype ; CRISPR-Cas Systems
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
A chromosome-scale assembly for 'd'Anjou' pear.
Autorzy:
Yocca A; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Akinyuwa M; Department of Entomology and Plant Pathology, Auburn University, Auburn, AL 36849, USA.
Bailey N; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Cliver B; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Estes H; Department of Entomology and Plant Pathology, Auburn University, Auburn, AL 36849, USA.
Guillemette A; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Hasannin O; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Hutchison J; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Jenkins W; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Kaur I; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Khanna RR; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Loftin M; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Lopes L; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Moore-Pollard E; Department of Biological Sciences, University of Memphis, Memphis, TN 38152-3530, USA.
Olofintila O; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Oyebode GO; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Patel J; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Thapa P; Department of Entomology and Plant Pathology, Auburn University, Auburn, AL 36849, USA.
Waldinger M; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Zhang J; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Zhang Q; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Goertzen L; Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Carey SB; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Hargarten H; Physiology and Pathology of Tree Fruits Research Laboratory, USDA ARS, Wenatchee, WA 98801, USA.
Mattheis J; Physiology and Pathology of Tree Fruits Research Laboratory, USDA ARS, Wenatchee, WA 98801, USA.
Zhang H; Physiology and Pathology of Tree Fruits Research Laboratory, USDA ARS, Wenatchee, WA 98801, USA.; Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USA.
Jones T; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.; HudsonAlpha Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Boston L; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.; HudsonAlpha Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Grimwood J; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.; HudsonAlpha Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Ficklin S; Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USA.
Honaas L; Physiology and Pathology of Tree Fruits Research Laboratory, USDA ARS, Wenatchee, WA 98801, USA.
Harkess A; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Mar 06; Vol. 14 (3).
Typ publikacji:
Journal Article
MeSH Terms:
Pyrus*/genetics
Malus*/genetics
Genome, Plant ; Plant Breeding ; Chromosomes
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A chromosome-level genome assembly of Zasmidium syzygii isolated from banana leaves.
Autorzy:
van Westerhoven AC; Laboratory of Phytopathology, Wageningen University & Research, Wageningen 6700 AA, The Netherlands.; Theoretical Biology and Bioinformatics, Department of Biology, Utrecht University, Utrecht 3584 CS, The Netherlands.
Mehrabi R; Laboratory of Phytopathology, Wageningen University & Research, Wageningen 6700 AA, The Netherlands.; Keygene N.V., Wageningen 6700 AE, The Netherlands.
Talebi R; Keygene N.V., Wageningen 6700 AE, The Netherlands.
Steentjes MBF; Laboratory of Phytopathology, Wageningen University & Research, Wageningen 6700 AA, The Netherlands.
Corcolon B; Research, Information, Compliance Department, Tadeco Inc., Panabo, Davao del Norte 8105, Philippines.
Chong PA; Escuela Superior Politécnica del Litoral, Centro de Investigaciones Biotecnológicas del Ecuador, Laboratorio de Biología Molecular, ESPOL Polytechnic University, Guayaquil 090112, Ecuador.
Kema GHJ; Laboratory of Phytopathology, Wageningen University & Research, Wageningen 6700 AA, The Netherlands.
Seidl MF; Theoretical Biology and Bioinformatics, Department of Biology, Utrecht University, Utrecht 3584 CS, The Netherlands.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Mar 06; Vol. 14 (3).
Typ publikacji:
Journal Article
MeSH Terms:
Musa*/genetics
Ascomycota*
Base Sequence ; Chromosomes ; Plant Leaves/genetics
SCR Organism:
Zasmidium syzygii
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Chromosome-level genome of the transformable northern wattle, Acacia crassicarpa.
Autorzy:
Massaro I; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA.
Poethig RS; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Sinha NR; Department of Plant Biology, University of California Davis, Davis, CA 95616, USA.
Leichty AR; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA.; Department of Plant Biology, University of California Davis, Davis, CA 95616, USA.; USDA Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA.; 800 Buchanan Street, Albany, CA 94710, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Mar 06; Vol. 14 (3).
Typ publikacji:
Journal Article
MeSH Terms:
Acacia*/genetics
Animals ; Comb and Wattles ; Base Sequence ; Chromosomes
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Whole-genome sequence and annotation of Penstemon davidsonii.
Autorzy:
Ostevik KL; Department of Evolution, Ecology, and Organismal Biology, University of California Riverside, Riverside, CA 92521, USA.; Department of Biology, Duke University, Durham, NC 27708, USA.
Alabady M; Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.
Zhang M; Department of Statistics, University of Georgia, Athens, GA 30602, USA.
Rausher MD; Department of Biology, Duke University, Durham, NC 27708, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Mar 06; Vol. 14 (3).
Typ publikacji:
Journal Article
MeSH Terms:
Penstemon*/genetics
Molecular Sequence Annotation ; Genome ; High-Throughput Nucleotide Sequencing ; Transcriptome ; Chromosomes
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Chromosome-level genome assembly of navel orange cv. Gannanzao (Citrus sinensis Osbeck cv. Gannanzao).
Autorzy:
Xiong Z; National Navel Orange Engineering Research Center, Gannan Normal University, Ganzhou, Jiangxi 341000, China.
Yin H; National Navel Orange Engineering Research Center, Gannan Normal University, Ganzhou, Jiangxi 341000, China.
Wang N; Citrus Research and Education Center, Department of Microbiology and Cell Science, IFAS, University of Florida, Lake Alfred, FL 33850, USA.
Han G; College of Life Sciences, Nanjing Normal University, Jiangsu 210098, China.
Gao Y; National Navel Orange Engineering Research Center, Gannan Normal University, Ganzhou, Jiangxi 341000, China.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Feb 07; Vol. 14 (2).
Typ publikacji:
Journal Article
MeSH Terms:
Citrus sinensis*/genetics
Fruit ; Chromosomes
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The chromosome-scale genome and the genetic resistance machinery against insect herbivores of the Mexican toloache, Datura stramonium.
Autorzy:
De-la-Cruz IM; Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.; Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Lomma, Alnarp 230 53, Sweden.
Oyama K; Escuela Nacional de Estudios Superiores (ENES), Universidad Nacional Autónoma de México (UNAM), Campus Morelia, Morelia, Michoacán 8701, Mexico.
Núñez-Farfán J; Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Feb 07; Vol. 14 (2).
Typ publikacji:
Journal Article
MeSH Terms:
Datura stramonium*/genetics
Animals ; Herbivory ; Insecta ; Ecology ; Plants ; Chromosomes
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Conserving a threatened North American walnut: a chromosome-scale reference genome for butternut (Juglans cinerea).
Autorzy:
Guzman-Torres CR; Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.
Trybulec E; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06269, USA.
LeVasseur H; Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.
Akella H; Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.
Amee M; Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.
Strickland E; Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.
Pauloski N; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06269, USA.
Williams M; Atlantic Forestry Center, Canadian Forest Service, Natural Resources Canada, Fredericton, NB E3B 5P7, Canada.
Romero-Severson J; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.
Hoban S; The Center for Tree Science, The Morton Arboretum, Lisle, IL 60532, USA.
Woeste K; USDA Forest Service, Northern Research Station, West Lafayette, IN 47906, USA.
Pike CC; USDA Forest Service, Eastern Region State, Private and Tribal Forestry, West Lafayette, IN 47906, USA.
Fetter KC; Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.
Webster CN; Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.
Neitzey ML; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06269, USA.
O'Neill RJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06269, USA.
Wegrzyn JL; Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Feb 07; Vol. 14 (2).
Typ publikacji:
Journal Article
MeSH Terms:
Juglans*/genetics
Humans ; United States ; Phylogeny ; Ecosystem ; Chromosomes ; North America
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The gyrfalcon (Falco rusticolus) genome.
Autorzy:
Zuccolo A; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.; Crop Science Research Center, Sant'Anna School of Advanced Studies, Piazza Martiri della Libertà 33, 56127 Pisa, Italy.
Mfarrej S; King Abdullah University of Science and Technology (KAUST), Pathogen Genomics Laboratory, Biological and Environmental Science and Engineering (BESE), Thuwal-Jeddah 23955-6900, Saudi Arabia.
Celii M; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.
Mussurova S; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.
Rivera LF; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.
Llaca V; Research and Development, Corteva Agriscience, Johnston, IA 50131, USA.
Mohammed N; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.
Pain A; King Abdullah University of Science and Technology (KAUST), Pathogen Genomics Laboratory, Biological and Environmental Science and Engineering (BESE), Thuwal-Jeddah 23955-6900, Saudi Arabia.
Alrefaei AF; Department of Biology, Jamoum University College, Umm Al-Qura University, Mecca 24382, Saudi Arabia.
Alrefaei AF; Department of Zoology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia.
Wing RA; Center for Desert Agriculture (CDA), Biological and Environmental Sciences & Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.; School of Plant Sciences, Arizona Genomics Institute, University of Arizona, 24 Tucson, Arizona 85721, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Mar 09; Vol. 13 (3).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genomics*
Chromosomes*
Molecular Sequence Annotation ; DNA Transposable Elements
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Polyploidy on islands - concerted evolution and gene loss amid chromosomal stasis.
Autorzy:
Joshi P; School of Natural Sciences, Massey University, Palmerston North, New Zealand.
Ansari H; AgResearch Grasslands Research Centre, Palmerston North, New Zealand.
Dickson R; School of Natural Sciences, Massey University, Palmerston North, New Zealand.
Ellison NW; AgResearch Grasslands Research Centre, Palmerston North, New Zealand.
Skema C; School of Natural Sciences, Massey University, Palmerston North, New Zealand.; Morris Arboretum of the University of Pennsylvania, Philadelphia, PA, USA.
Tate JA; School of Natural Sciences, Massey University, Palmerston North, New Zealand.
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Źródło:
Annals of botany [Ann Bot] 2023 Feb 07; Vol. 131 (1), pp. 33-44.
Typ publikacji:
Journal Article
MeSH Terms:
Chromosomes*
Polyploidy*
Phylogeny ; In Situ Hybridization, Fluorescence ; Australia ; DNA, Ribosomal/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Chromosome size matters: genome evolution in the cyperid clade.
Autorzy:
Elliott TL; Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.
Zedek F; Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.
Barrett RL; National Herbarium of New South Wales, Australian Institute of Botanical Science, Australian Botanic Garden, Locked Bag 6002, Mount Annan, New South Wales 2567, Australia.
Bruhl JJ; Botany and N.C.W. Beadle Herbarium, School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia.
Escudero M; Department of Plant Biology and Ecology, University of Seville, Reina Mercedes 6, 41012 Seville, Spain.
Hroudová Z; Institute of Botany of the Czech Academy of Sciences, 252 43 Průhonice, Czech Republic.; National Museum, Department of Botany, Cirkusová 1740, 193 00 Prague 9, Czech Republic.
Joly S; Montreal Botanical Garden, 4101, Sherbrooke East, Montreal, QC H1X 2B2, Canada.; Institut de recherche en biologie végétale, Département de sciences biologiques, Université de Montréal, 4101, Sherbrooke East, Montreal, QC H1X 2B2, Canada.
Larridon I; Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK.; Systematic and Evolutionary Botany Lab, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium.
Luceño M; Botany Area, Department of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, ctra. de Utrera km. 1, 41013, Seville, Spain.
Márquez-Corro JI; Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK.; Botany Area, Department of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, ctra. de Utrera km. 1, 41013, Seville, Spain.
Martín-Bravo S; Botany Area, Department of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, ctra. de Utrera km. 1, 41013, Seville, Spain.
Muasya AM; Bolus Herbarium, Department of Biological Sciences, University of Cape Town, Private Bag X3, Rondebosch, Cape Town 7701, South Africaand.
Šmarda P; Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.
Thomas WW; New York Botanical Garden, Bronx, NY 10458-5126, USA.
Wilson KL; National Herbarium of New South Wales, Australian Institute of Botanical Science, Australian Botanic Garden, Locked Bag 6002, Mount Annan, New South Wales 2567, Australia.
Bureš P; Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.
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Źródło:
Annals of botany [Ann Bot] 2022 Dec 31; Vol. 130 (7), pp. 999-1014.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromosomes, Plant*/genetics
Evolution, Molecular*
Phylogeny ; Genome Size ; Genome, Plant/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Deep generative modeling and clustering of single cell Hi-C data.
Autorzy:
Liu Q; Department of Statistics, Stanford University, Stanford, CA 94305, USA.
Zeng W; College of Software, Nankai University, Tianjin 300071, China.
Zhang W; Department of Biomedical Engineering, School of Control Science and Engineering, Shandong University, Jinan, Shandong 250061, China.
Wang S; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA 92093, USA.
Chen H; The Research Center for Intelligent Network, Zhejiang Lab, Hangzhou 311121, China.
Jiang R; Ministry of Education Key Laboratory of Bioinformatics, Research Department of Bioinformatics at the Beijing National Research Center for Information Science and Technology, Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University, Beijing 100084, China.
Zhou M; SenseBrain Research, San Jose, CA 95131, USA.
Zhang S; Shanghai Artificial Intelligence Laboratory, Shanghai 200240, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromatin*/genetics
Chromosomes*
Genome ; DNA ; Cluster Analysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A review and performance evaluation of clustering frameworks for single-cell Hi-C data.
Autorzy:
Zhen C; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.; Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, 710072, Xi'an, China.
Wang Y; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.; Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, 710072, Xi'an, China.
Geng J; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.; Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, 710072, Xi'an, China.
Han L; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.; Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, 710072, Xi'an, China.
Li J; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.; Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, 710072, Xi'an, China.
Peng J; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.; Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, 710072, Xi'an, China.
Wang T; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.; Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, 710072, Xi'an, China.
Hao J; School of Computer Software, Tianjin University, 300350, Tianjin, China.
Shang X; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.; Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, 710072, Xi'an, China.
Wei Z; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.
Zhu P; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.
Peng J; School of Computer Science, Northwestern Polytechnical University, 710072, Xi'an, China.; Key Laboratory of Big Data Storage and Management, Northwestern Polytechnical University, 710072, Xi'an, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2022 Nov 19; Vol. 23 (6).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromatin*
Chromosomes*
Humans ; Mice ; Animals ; Cluster Analysis ; Genome ; Molecular Conformation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A high-quality chromosome-level genome assembly of the bivalve mollusk Mactra veneriformis.
Autorzy:
Sun Y; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Liu X; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Xie X; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Bai Y; Panjin Guanghe Crab Industry Co., LTD, Panjin 124299, China.
Wang S; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Teng W; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Li D; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Li H; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Yu Z; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Zhang M; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Zhou Z; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
Liu X; Panjin Guanghe Crab Industry Co., LTD, Panjin 124299, China.
Nie H; College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China.
Du S; Department of Biochemistry and Molecular Biology, Institute of Marine and Environmental Technology, University of Maryland School of Medicine, Baltimore, MD 21202, USA.
Li X; Key Laboratory of Zoonosis, Aquaculture Department, College of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang 110866, China.
Li Q; Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China.
Wang Q; Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute, Dalian 116023, China.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2022 Nov 04; Vol. 12 (11).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromosomes*/genetics
Bivalvia*/genetics
Animals ; Phylogeny ; Genome
SCR Organism:
Mizuhopecten yessoensis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Chromosome-level phased genome assembly of "Antonovka" identified candidate apple scab-resistance genes highly homologous to HcrVf2 and HcrVf1 on linkage group 1.
Autorzy:
Švara A; Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Geneva, NY 14456, USA.
Sun H; Boyce Thompson Institute, Cornell University, Ithaca, NY 14853, USA.; Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
Fei Z; Boyce Thompson Institute, Cornell University, Ithaca, NY 14853, USA.; USDA-ARS Robert W. Holley Center for Agriculture and Health, Ithaca, NY 14853, USA.
Khan A; Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Geneva, NY 14456, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Dec 29; Vol. 14 (1).
Typ publikacji:
Journal Article
MeSH Terms:
Malus*/metabolism
Ascomycota*/genetics
Genes, Plant ; Chromosomes ; Plant Diseases/genetics ; Plant Diseases/microbiology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797).
Autorzy:
Destanović D; Department of Neurosciences and Developmental Biology, University of Vienna, Vienna 1030, Austria.
Schultz DT; Department of Neurosciences and Developmental Biology, University of Vienna, Vienna 1030, Austria.
Styfhals R; Department of Biology, Lab of Developmental Neurobiology, Animal Physiology and Neurobiology Division, KU Leuven, Leuven 3000, Belgium.; Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples 80121, Italy.
Cruz F; Centro Nacional de Análisis Genómico (CNAG), Barcelona 08028, Spain.
Gómez-Garrido J; Centro Nacional de Análisis Genómico (CNAG), Barcelona 08028, Spain.
Gut M; Centro Nacional de Análisis Genómico (CNAG), Barcelona 08028, Spain.
Gut I; Centro Nacional de Análisis Genómico (CNAG), Barcelona 08028, Spain.
Fiorito G; Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples 80121, Italy.
Simakov O; Department of Neurosciences and Developmental Biology, University of Vienna, Vienna 1030, Austria.
Alioto TS; Centro Nacional de Análisis Genómico (CNAG), Barcelona 08028, Spain.
Ponte G; Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Naples 80121, Italy.
Seuntjens E; Department of Biology, Lab of Developmental Neurobiology, Animal Physiology and Neurobiology Division, KU Leuven, Leuven 3000, Belgium.; KU Leuven Institute for Single Cell Omics (LISCO), KU Leuven, Leuven 3000, Belgium.; Leuven Brain Institute, KU Leuven, Leuven 3000, Belgium.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Dec 06; Vol. 13 (12).
Typ publikacji:
Journal Article
MeSH Terms:
Octopodiformes*/genetics
Animals ; Genome ; Genomics ; Nervous System ; Chromosomes/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
A haplotype-resolved chromosome-scale genome for Quercus rubra L. provides insights into the genetics of adaptive traits for red oak species.
Autorzy:
Kapoor B; Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN 37996, USA.
Jenkins J; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Schmutz J; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Zhebentyayeva T; Department of Forestry and Natural Resources, University of Kentucky, Lexington, KY 40506, USA.; Department of Ecosystem Science and Management, Pennsylvania State University, University Park, PA 16802, USA.
Kuelheim C; College of Forest Resources and Environmental Science, Michigan Tech University, Houghton, MI 49931, USA.
Coggeshall M; College of Agriculture, Food and Natural Resources, University of Missouri, Columbia, MO 65211, USA.
Heim C; Horticultural Science, North Carolina State University, Raleigh, NC 27695, USA.
Lasky JR; Department of Biology, Pennsylvania State University, University Park, PA 16802, USA.
Leites L; Department of Ecosystem Science and Management, Pennsylvania State University, University Park, PA 16802, USA.
Islam-Faridi N; Forest Tree Molecular Cytogenetics Laboratory, USDA-FS, SRS-4160, Department of Ecology & Conservation Biology, Texas A&M University, College Station, TX 77843, USA.
Romero-Severson J; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.
DeLeo VL; Department of Biology, Pennsylvania State University, University Park, PA 16802, USA.
Lucas SM; Department of Biology, Pennsylvania State University, University Park, PA 16802, USA.
Lazic D; Department of Forest Genetics and Forest Tree Breeding, University of Göttingen, Göttingen, Lower Saxony 37077, Germany.
Gailing O; Department of Forest Genetics and Forest Tree Breeding, University of Göttingen, Göttingen, Lower Saxony 37077, Germany.
Carlson J; Department of Ecosystem Science and Management, Pennsylvania State University, University Park, PA 16802, USA.
Staton M; Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN 37996, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Nov 01; Vol. 13 (11).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Quercus*/genetics
Phylogeny ; Haplotypes ; Genomics ; Chromosomes
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Near-complete de novo assembly of Tricholoma bakamatsutake chromosomes revealed the structural divergence and differentiation of Tricholoma genomes.
Autorzy:
Ichida H; Ion Beam Breeding Group, RIKEN Nishina Center for Accelerator-Based Science, Wako, Saitama 351-0198, Japan.
Murata H; Forestry and Forest Products Research Institute (FFPRI), Forest Research and Management Organization, Tsukuba, Ibaraki 305-8687, Japan.
Hatakeyama S; Department of Regulatory Biology, Faculty of Science, Saitama University, Saitama, Saitama 338-8570, Japan.
Yamada A; Faculty of Agriculture, Shinshu University, Minami-minowa, Nagano 399-4598, Japan.
Ohta A; Kansai Research Center, FFPRI, Kyoto, Kyoto 612-0855, Japan.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Nov 01; Vol. 13 (11).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Tricholoma*/genetics
Mycorrhizae*
Quercus*/genetics
Phylogeny ; Chromosomes
SCR Organism:
Tricholoma bakamatsutake
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Wyświetlanie 1-20 z 801

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