Autor: "Clarke ND" - OpacWWW

Skocz do pozycji: 21.

Tytuł:: Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome.
Autorzy:: Wollmann H; Temasek Lifesciences Laboratory, National University of Singapore, Singapore, Singapore.
Holec S
Alden K
Clarke ND
Jacques PÉ
Berger F; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2012; Vol. 8 (5), pp. e1002658. Date of Electronic Publication: 2012 May 03.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Arabidopsis*/genetics
Arabidopsis*/growth & development
Chromatin*/genetics
Chromatin*/metabolism
Evolution, Molecular*
Histones/*genetics
Histones/*metabolism
Cell Cycle Checkpoints/genetics ; Cell Differentiation ; Gene Expression Regulation, Plant ; Genome, Plant ; Histone Demethylases/genetics ; Transcriptome/genetics

Czasopismo naukowe

Skocz do pozycji: 22.

Tytuł:: Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes.
Autorzy:: Johnson MT; Department of Biology, University of Toronto at Mississauga, Mississauga, Ontario, Canada.
Carpenter EJ
Tian Z
Bruskiewich R
Burris JN
Carrigan CT
Chase MW
Clarke ND
Covshoff S
Depamphilis CW
Edger PP
Goh F
Graham S
Greiner S
Hibberd JM
Jordon-Thaden I
Kutchan TM
Leebens-Mack J
Melkonian M
Miles N
Myburg H
Patterson J
Pires JC
Ralph P
Rolf M
Sage RF
Soltis D
Soltis P
Stevenson D
Stewart CN Jr
Surek B
Thomsen CJ
Villarreal JC
Wu X
Zhang Y
Deyholos MK
Wong GK; Pokaż więcej
Źródło:: PloS one [PLoS One] 2012; Vol. 7 (11), pp. e50226. Date of Electronic Publication: 2012 Nov 21.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Genome, Plant*
Flowers/*genetics
High-Throughput Nucleotide Sequencing/*standards
Plant Leaves/*genetics
Plants/*genetics
RNA, Plant/*genetics
RNA, Plant/*isolation & purification
Base Sequence ; Gene Expression Profiling ; High-Throughput Nucleotide Sequencing/methods ; Phylogeny ; Plants/classification ; RNA, Plant/classification ; RNA, Plant/standards ; Sequence Analysis, RNA

Czasopismo naukowe

Skocz do pozycji: 23.

Tytuł:: Integrative model of genomic factors for determining binding site selection by estrogen receptor-α.
Autorzy:: Joseph R; Genome Institute of Singapore, Agency for Science, Technology and Research, Singapore.
Orlov YL
Huss M
Sun W
Kong SL
Ukil L
Pan YF
Li G
Lim M
Thomsen JS
Ruan Y
Clarke ND
Prabhakar S
Cheung E
Liu ET; Pokaż więcej
Źródło:: Molecular systems biology [Mol Syst Biol] 2010 Dec 21; Vol. 6, pp. 456.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Chromatin/*metabolism
Estrogen Receptor alpha/*metabolism
Transcription Factors/*metabolism
Base Sequence ; Binding Sites ; Cell Line ; Cell Line, Tumor ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Estrogen Receptor alpha/chemistry ; Estrogen Receptor alpha/genetics ; Hepatocyte Nuclear Factor 3-alpha ; Humans ; Ligands ; Models, Biological ; Protein Binding ; RNA Polymerase II/metabolism ; Response Elements ; Transcription Initiation Site

Czasopismo naukowe

Skocz do pozycji: 24.

Tytuł:: A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.
Autorzy:: Chia NY; Gene Regulation Laboratory, Genome Institute of Singapore, 60 Biopolis Street, Singapore 138672.
Chan YS
Feng B
Lu X
Orlov YL
Moreau D
Kumar P
Yang L
Jiang J
Lau MS
Huss M
Soh BS
Kraus P
Li P
Lufkin T
Lim B
Clarke ND
Bard F
Ng HH; Pokaż więcej
Źródło:: Nature [Nature] 2010 Nov 11; Vol. 468 (7321), pp. 316-20. Date of Electronic Publication: 2010 Oct 17.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: RNA Interference*
Embryonic Stem Cells/*cytology
Embryonic Stem Cells/*metabolism
Genome, Human/*genetics
Repressor Proteins/*metabolism
Animals ; Base Sequence ; Cell Line ; Cellular Reprogramming/genetics ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Enhancer Elements, Genetic/genetics ; Fibroblasts/cytology ; Fibroblasts/metabolism ; Gene Expression Regulation/genetics ; Humans ; Induced Pluripotent Stem Cells/cytology ; Induced Pluripotent Stem Cells/metabolism ; Kruppel-Like Factor 4 ; Mice ; Octamer Transcription Factor-3/genetics ; Octamer Transcription Factor-3/metabolism ; RNA-Binding Proteins ; Repressor Proteins/genetics ; SOXB1 Transcription Factors/metabolism ; Transcription Factors

Czasopismo naukowe

Skocz do pozycji: 25.

Tytuł:: Towards a rigorous assessment of systems biology models: the DREAM3 challenges.
Autorzy:: Prill RJ; IBM T. J. Watson Research Center, Yorktown Heights, New York, United States of America.
Marbach D
Saez-Rodriguez J
Sorger PK
Alexopoulos LG
Xue X
Clarke ND
Altan-Bonnet G
Stolovitzky G; Pokaż więcej
Źródło:: PloS one [PLoS One] 2010 Feb 23; Vol. 5 (2), pp. e9202. Date of Electronic Publication: 2010 Feb 23.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Algorithms*
Models, Biological*
Computational Biology/*methods
Systems Biology/*methods
Animals ; Cluster Analysis ; Gene Expression Profiling/methods ; Gene Regulatory Networks ; Humans ; Protein Interaction Mapping/methods ; Reproducibility of Results ; Signal Transduction ; Software

Czasopismo naukowe

Skocz do pozycji: 26.

Tytuł:: Success in the DREAM3 signaling response challenge using simple weighted-average imputation: lessons for community-wide experiments in systems biology.
Autorzy:: Clarke ND; Genome Institute of Singapore, Singapore. />Bourque G; Pokaż więcej
Źródło:: PloS one [PLoS One] 2010 Jan 26; Vol. 5 (1), pp. e8417. Date of Electronic Publication: 2010 Jan 26.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Signal Transduction*
Systems Biology*
Phosphoproteins/*metabolism