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Wyszukujesz frazę ""Contig Mapping"" wg kryterium: Temat


Tytuł :
Regional sequence expansion or collapse in heterozygous genome assemblies.
Autorzy :
Asalone KC; Biology Department, American University, Washington DC, United States of America.
Ryan KM; Biology Department, American University, Washington DC, United States of America.
Yamadi M; Biology Department, American University, Washington DC, United States of America.
Cohen AL; Biology Department, American University, Washington DC, United States of America.
Farmer WG; Biology Department, American University, Washington DC, United States of America.
George DJ; Biology Department, American University, Washington DC, United States of America.
Joppert C; Biology Department, American University, Washington DC, United States of America.
Kim K; Biology Department, American University, Washington DC, United States of America.
Mughal MF; Biology Department, American University, Washington DC, United States of America.
Said R; Biology Department, American University, Washington DC, United States of America.
Toksoz-Exley M; Mathematics and Statistics Department, American University, Washington DC, United States of America.
Bisk E; Office of Information Technology, American University, Washington DC, United States of America.
Bracht JR; Biology Department, American University, Washington DC, United States of America.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2020 Jul 31; Vol. 16 (7), pp. e1008104. Date of Electronic Publication: 2020 Jul 31 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput. Biol. Subsets: MEDLINE
MeSH Terms :
Contig Mapping*
Genome, Helminth*
Heterozygote*
Molecular Sequence Annotation/*methods
Nematoda/*genetics
ATP Binding Cassette Transporter, Subfamily B, Member 1/metabolism ; Algorithms ; Animals ; High-Throughput Nucleotide Sequencing/methods ; Likelihood Functions ; Proteome ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information.
Autorzy :
Kim HS; KOGIC, Ulsan National Institute of Science and Technology (UNIST), UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 44919, Republic of Korea.
Jeon S; KOGIC, Ulsan National Institute of Science and Technology (UNIST), UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 44919, Republic of Korea.; Department of Biomedical Engineering, School of Life Sciences, UNIST-gil 50, Eonyang-eup, Ulju-gun, UNIST, Ulsan 44919, Republic of Korea.
Kim C; KOGIC, Ulsan National Institute of Science and Technology (UNIST), UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 44919, Republic of Korea.
Kim YK; KOGIC, Ulsan National Institute of Science and Technology (UNIST), UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 44919, Republic of Korea.
Cho YS; Clinomics Inc., UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 44919, Republic of Korea.
Kim J; Personal Genomics Institute, Genome Research Foundation, Osong saengmyong1ro, Cheongju 28160, Republic of Korea.
Blazyte A; KOGIC, Ulsan National Institute of Science and Technology (UNIST), UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 44919, Republic of Korea.
Manica A; Department of Zoology, Cambridge University, Downing street, Cambridge CB2 3EJ, UK.
Lee S; KOGIC, Ulsan National Institute of Science and Technology (UNIST), UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 44919, Republic of Korea.; Department of Biomedical Engineering, School of Life Sciences, UNIST-gil 50, Eonyang-eup, Ulju-gun, UNIST, Ulsan 44919, Republic of Korea.
Bhak J; KOGIC, Ulsan National Institute of Science and Technology (UNIST), UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 44919, Republic of Korea.; Department of Biomedical Engineering, School of Life Sciences, UNIST-gil 50, Eonyang-eup, Ulju-gun, UNIST, Ulsan 44919, Republic of Korea.; Clinomics Inc., UNIST-gil 50, Eonyang-eup, Ulju-gun, Ulsan 44919, Republic of Korea.; Personal Genomics Institute, Genome Research Foundation, Osong saengmyong1ro, Cheongju 28160, Republic of Korea.
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Źródło :
GigaScience [Gigascience] 2019 Dec 01; Vol. 8 (12).
Typ publikacji :
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN: 2047-217X (Electronic) Linking ISSN: 2047217X NLM ISO Abbreviation: Gigascience Subsets: MEDLINE
MeSH Terms :
Chromosomes, Human/*genetics
Contig Mapping/*economics
Whole Genome Sequencing/*methods
Contig Mapping/methods ; Cost-Benefit Analysis ; Databases, Genetic ; High-Throughput Nucleotide Sequencing/economics ; High-Throughput Nucleotide Sequencing/methods ; Humans ; Republic of Korea ; Single Molecule Imaging ; Whole Genome Sequencing/economics
Czasopismo naukowe
Tytuł :
MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage.
Autorzy :
Qian J; Department of Information Engineering, University of Padova, Via Giovanni Gradenigo 6, Padova, Italy.
Comin M; Department of Information Engineering, University of Padova, Via Giovanni Gradenigo 6, Padova, Italy. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2019 Nov 22; Vol. 20 (Suppl 9), pp. 367. Date of Electronic Publication: 2019 Nov 22.
Typ publikacji :
Journal Article
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE
MeSH Terms :
Algorithms*
Contig Mapping*
Metagenome*
Metagenomics*
Probability*
Statistics as Topic*
Cluster Analysis ; Databases, Genetic ; Microbiota/genetics
Czasopismo naukowe
Tytuł :
SQMtools: automated processing and visual analysis of 'omics data with R and anvi'o.
Autorzy :
Puente-Sánchez F; Systems Biology Department, Centro Nacional de Biotecnología (CNB-CSIC), C/ Darwin n° 3, Campus de Cantoblanco, 28049, Madrid, Spain. .
García-García N; Systems Biology Department, Centro Nacional de Biotecnología (CNB-CSIC), C/ Darwin n° 3, Campus de Cantoblanco, 28049, Madrid, Spain.
Tamames J; Systems Biology Department, Centro Nacional de Biotecnología (CNB-CSIC), C/ Darwin n° 3, Campus de Cantoblanco, 28049, Madrid, Spain.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Aug 14; Vol. 21 (1), pp. 358. Date of Electronic Publication: 2020 Aug 14.
Typ publikacji :
Journal Article
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE
MeSH Terms :
Software*
Computational Biology/*methods
Contig Mapping ; Databases, Factual ; High-Throughput Nucleotide Sequencing ; Metagenomics
Czasopismo naukowe
Tytuł :
FastEtch: A Fast Sketch-Based Assembler for Genomes.
Autorzy :
Ghosh P
Kalyanaraman A
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Źródło :
IEEE/ACM transactions on computational biology and bioinformatics [IEEE/ACM Trans Comput Biol Bioinform] 2019 Jul-Aug; Vol. 16 (4), pp. 1091-1106. Date of Electronic Publication: 2017 Sep 11.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info :
Publisher: IEEE Computer Society Country of Publication: United States NLM ID: 101196755 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-9964 (Electronic) Linking ISSN: 15455963 NLM ISO Abbreviation: IEEE/ACM Trans Comput Biol Bioinform Subsets: MEDLINE
MeSH Terms :
Genome*
Software*
Computational Biology/*instrumentation
Contig Mapping/*instrumentation
Algorithms ; Animals ; Caenorhabditis elegans/genetics ; Computational Biology/methods ; Contig Mapping/methods ; Escherichia coli/genetics ; Genomics ; High-Throughput Nucleotide Sequencing ; Humans ; Probability ; Yeasts/genetics
Czasopismo naukowe
Tytuł :
A Short-Read Genome Assembly Resource for Leveillula taurica Causing Powdery Mildew Disease of Sweet Pepper ( Capsicum annuum ).
Autorzy :
Kusch S; Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University, Aachen, Germany.
Németh MZ; Plant Protection Institute, Centre for Agricultural Research, Budapest, Hungary.
Vaghefi N; Centre for Crop Health, University of Southern Queensland, Toowoomba, Australia.
Ibrahim HMM; Division of Plant Biotechnics, Katholieke Universiteit Leuven, Leuven, Belgium.
Panstruga R; Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University, Aachen, Germany.
Kiss L; Plant Protection Institute, Centre for Agricultural Research, Budapest, Hungary.; Centre for Crop Health, University of Southern Queensland, Toowoomba, Australia.
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Źródło :
Molecular plant-microbe interactions : MPMI [Mol Plant Microbe Interact] 2020 Jun; Vol. 33 (6), pp. 782-786. Date of Electronic Publication: 2020 Apr 29.
Typ publikacji :
Journal Article
Journal Info :
Publisher: APS Press Country of Publication: United States NLM ID: 9107902 Publication Model: Print-Electronic Cited Medium: Print ISSN: 0894-0282 (Print) Linking ISSN: 08940282 NLM ISO Abbreviation: Mol. Plant Microbe Interact. Subsets: MEDLINE
MeSH Terms :
Genome, Fungal*
Ascomycota/*genetics
Capsicum/*microbiology
Plant Diseases/*microbiology
Base Composition ; Contig Mapping ; DNA Transposable Elements
Czasopismo naukowe
Tytuł :
Draft Genome Resource for the Ex-types of Phytophthora ramorum , P. kernoviae , and P. melonis , Species of Regulatory Concern, Using Ultra-Long Read MinION Nanopore Sequencing.
Autorzy :
Srivastava SK; USDA-APHIS-PPQ, Science and Technology Beltsville Laboratory, Beltsville, MD 20705, U.S.A.; Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, U.S.A.
Abad ZG; USDA-APHIS-PPQ, Science and Technology Beltsville Laboratory, Beltsville, MD 20705, U.S.A.
Knight LM; USDA-APHIS-PPQ, Science and Technology Beltsville Laboratory, Beltsville, MD 20705, U.S.A.; Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, U.S.A.
Zeller K; USDA-APHIS-PPQ, Science and Technology Beltsville Laboratory, Beltsville, MD 20705, U.S.A.
Mavrodieva V; USDA-APHIS-PPQ, Science and Technology Beltsville Laboratory, Beltsville, MD 20705, U.S.A.
Nakhla M; USDA-APHIS-PPQ, Science and Technology Beltsville Laboratory, Beltsville, MD 20705, U.S.A.
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Źródło :
Molecular plant-microbe interactions : MPMI [Mol Plant Microbe Interact] 2020 Jun; Vol. 33 (6), pp. 794-797. Date of Electronic Publication: 2020 Apr 16.
Typ publikacji :
Journal Article
Journal Info :
Publisher: APS Press Country of Publication: United States NLM ID: 9107902 Publication Model: Print-Electronic Cited Medium: Print ISSN: 0894-0282 (Print) Linking ISSN: 08940282 NLM ISO Abbreviation: Mol. Plant Microbe Interact. Subsets: MEDLINE
MeSH Terms :
Genome*
Nanopore Sequencing*
Phytophthora/*genetics
Plant Diseases/*parasitology
Contig Mapping ; High-Throughput Nucleotide Sequencing ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł :
Genome reconstruction of the non-culturable spinach downy mildew Peronospora effusa by metagenome filtering.
Autorzy :
Klein J; Department of Biology, Plant-Microbe Interactions, Utrecht University, Utrecht, The Netherlands.
Neilen M; Department of Biology, Plant-Microbe Interactions, Utrecht University, Utrecht, The Netherlands.
van Verk M; Department of Biology, Plant-Microbe Interactions, Utrecht University, Utrecht, The Netherlands.; Crop Data Science, KeyGene, Wageningen, The Netherlands.
Dutilh BE; Department of Biology, Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, The Netherlands.
Van den Ackerveken G; Department of Biology, Plant-Microbe Interactions, Utrecht University, Utrecht, The Netherlands.
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Źródło :
PloS one [PLoS One] 2020 May 12; Vol. 15 (5), pp. e0225808. Date of Electronic Publication: 2020 May 12 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS ONE Subsets: MEDLINE
MeSH Terms :
Metagenome*
Peronospora/*genetics
Plant Diseases/*microbiology
Spinacia oleracea/*microbiology
Contig Mapping/methods ; Peronospora/pathogenicity ; Virulence
Czasopismo naukowe
Tytuł :
Linkage disequilibrium maps to guide contig ordering for genome assembly.
Autorzy :
Pengelly RJ; Genetic Epidemiology & Bioinformatics, Faculty of Medicine, University of Southampton, Southampton, UK.
Collins A; Genetic Epidemiology & Bioinformatics, Faculty of Medicine, University of Southampton, Southampton, UK.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2019 Feb 15; Vol. 35 (4), pp. 541-545.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
MeSH Terms :
Contig Mapping*
Linkage Disequilibrium*
Polymorphism, Single Nucleotide*
Software*
Humans
Czasopismo naukowe
Tytuł :
BMC3C: binning metagenomic contigs using codon usage, sequence composition and read coverage.
Autorzy :
Yu G; College of Computer and Information Science, Southwest University, Chongqing, China.
Jiang Y; College of Computer and Information Science, Southwest University, Chongqing, China.
Wang J; College of Computer and Information Science, Southwest University, Chongqing, China.
Zhang H; School of Life Sciences and Partner State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China.
Luo H; School of Life Sciences and Partner State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2018 Dec 15; Vol. 34 (24), pp. 4172-4179.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
MeSH Terms :
Algorithms*
Codon*
Contig Mapping*
Metagenomics*
Cluster Analysis ; Computational Biology ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
Autorzy :
Roach MJ; The Australian Wine Research Institute, PO Box 197, Glen Osmond, SA, 5064, Australia. .
Schmidt SA; The Australian Wine Research Institute, PO Box 197, Glen Osmond, SA, 5064, Australia.
Borneman AR; The Australian Wine Research Institute, PO Box 197, Glen Osmond, SA, 5064, Australia.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2018 Nov 29; Vol. 19 (1), pp. 460. Date of Electronic Publication: 2018 Nov 29.
Typ publikacji :
Journal Article
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE
MeSH Terms :
Alleles*
Contig Mapping*
Diploidy*
Haplotypes/*genetics
High-Throughput Nucleotide Sequencing/*methods
Arabidopsis/genetics ; Genome, Plant ; Haploidy ; Heterozygote ; Homozygote ; Polymorphism, Single Nucleotide/genetics ; Software
Czasopismo naukowe
Tytuł :
A preliminary integrated genetic map distinguishes every chromosome pair and locates essential genes related to abiotic adaptation of Crassostrea angulata/gigas.
Autorzy :
Cross I; Area de Genética. Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz. Polígono Río San Pedro, 11510 Puerto Real, Cádiz, Spain.
Portela-Bens S; Area de Genética. Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz. Polígono Río San Pedro, 11510 Puerto Real, Cádiz, Spain.
García-Angulo A; Area de Genética. Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz. Polígono Río San Pedro, 11510 Puerto Real, Cádiz, Spain.
Merlo MA; Area de Genética. Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz. Polígono Río San Pedro, 11510 Puerto Real, Cádiz, Spain.
Rodríguez ME; Area de Genética. Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz. Polígono Río San Pedro, 11510 Puerto Real, Cádiz, Spain.
Liehr T; Institut für Humangenetik, Universitätsklinikum Jena, 07743, Jena, Germany.
Rebordinos L; Area de Genética. Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz. Polígono Río San Pedro, 11510 Puerto Real, Cádiz, Spain. .
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Źródło :
BMC genetics [BMC Genet] 2018 Nov 15; Vol. 19 (1), pp. 104. Date of Electronic Publication: 2018 Nov 15.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100966978 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2156 (Electronic) Linking ISSN: 14712156 NLM ISO Abbreviation: BMC Genet.
MeSH Terms :
Chromosomes*
Contig Mapping*
Crassostrea/*genetics
Stress, Physiological/*genetics
Aneuploidy ; Animals ; Databases, Genetic ; Gene Library ; Karyotyping
Czasopismo naukowe
Tytuł :
Chromosome assembly of large and complex genomes using multiple references.
Autorzy :
Kolmogorov M; Department of Computer Science and Engineering, University of California, San Diego, California 92093, USA.
Armstrong J; Center for Biomolecular Science and Engineering, University of California, Santa Cruz, California 95064, USA.
Raney BJ; Center for Biomolecular Science and Engineering, University of California, Santa Cruz, California 95064, USA.
Streeter I; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton CB10 1SD, United Kingdom.
Dunn M; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.
Yang F; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.
Odom D; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.; Cancer Research UK Cambridge Institute, University of Cambridge, CB2 0RE Cambridge, United Kingdom.
Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton CB10 1SD, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.
Keane TM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton CB10 1SD, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.; School of Life Sciences, University of Nottingham, Nottingham NG7 2NR, United Kingdom.
Thybert D; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton CB10 1SD, United Kingdom.; Earlham Institute, Norwich Research Park, Norwich NR4 7UG, United Kingdom.
Paten B; Center for Biomolecular Science and Engineering, University of California, Santa Cruz, California 95064, USA.
Pham S; BioTuring Incorporated, San Diego, California 92121, USA.
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Źródło :
Genome research [Genome Res] 2018 Nov; Vol. 28 (11), pp. 1720-1732. Date of Electronic Publication: 2018 Oct 19.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res. Subsets: MEDLINE
MeSH Terms :
Contig Mapping/*methods
Whole Genome Sequencing/*methods
Animals ; Contig Mapping/standards ; Mice ; Reference Standards ; Whole Genome Sequencing/standards
Czasopismo naukowe
Tytuł :
Combining independent de novo assemblies to optimize leaf transcriptome of Persian walnut.
Autorzy :
Sadat-Hosseini M; Department of Horticulture, College of Aburaihan, University of Tehran, Tehran, Iran.; Department of Horticulture, Faculty of Agriculture, University of Jiroft, Jiroft, Iran.
Bakhtiarizadeh MR; Department of Animal and Poultry Science, College of Aburaihan, University of Tehran, Tehran, Iran.
Boroomand N; Department of Soil Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, Iran.
Tohidfar M; Department of Plant Biotechnology, Faculty of Life Science and Biotechnology, Shahid Beheshti University, Tehran, Iran.
Vahdati K; Department of Horticulture, College of Aburaihan, University of Tehran, Tehran, Iran.
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Źródło :
PloS one [PLoS One] 2020 Apr 28; Vol. 15 (4), pp. e0232005. Date of Electronic Publication: 2020 Apr 28 (Print Publication: 2020).
Typ publikacji :
Journal Article
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS ONE Subsets: MEDLINE
MeSH Terms :
Contig Mapping/*methods
Gene Expression Profiling/*methods
Juglans/*genetics
Computational Biology/methods ; Gene Library ; High-Throughput Nucleotide Sequencing/methods ; Molecular Sequence Annotation ; Plant Leaves/genetics ; Plant Proteins/genetics ; Sequence Analysis, RNA/methods
Czasopismo naukowe
Tytuł :
Lep-Anchor: automated construction of linkage map anchored haploid genomes.
Autorzy :
Rastas P; Institute of Biotechnology, HiLIFE, University of Helsinki, 00014 Helsinki, Finland.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2020 Apr 15; Vol. 36 (8), pp. 2359-2364.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
MeSH Terms :
Genome*
Software*
Chromosome Mapping ; Contig Mapping ; Genetic Linkage ; Haploidy ; Humans
Czasopismo naukowe
Tytuł :
De novo transcriptome analysis of halotolerant bacterium Staphylococcus sp. strain P-TSB-70 isolated from East coast of India: In search of salt stress tolerant genes.
Autorzy :
Das P; Fishery Resource and Environmental Management Division, Biotechnology Laboratory, ICAR- Central Inland Fisheries Research Institute, Barrackpore, West Bengal, India.
Behera BK; Fishery Resource and Environmental Management Division, Biotechnology Laboratory, ICAR- Central Inland Fisheries Research Institute, Barrackpore, West Bengal, India.
Chatterjee S; Parasitology and Microbiology Research Laboratory, Department of Zoology, University of Burdwan, Burdwan, West Bengal, India.
Das BK; Fishery Resource and Environmental Management Division, Biotechnology Laboratory, ICAR- Central Inland Fisheries Research Institute, Barrackpore, West Bengal, India.
Mohapatra T; Secretary, DARE and Director General, Indian Council of Agricultural Research, New Delhi, India.
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Źródło :
PloS one [PLoS One] 2020 Feb 10; Vol. 15 (2), pp. e0228199. Date of Electronic Publication: 2020 Feb 10 (Print Publication: 2020).
Typ publikacji :
Journal Article
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS ONE Subsets: MEDLINE
MeSH Terms :
Transcriptome*
Salt Tolerance/*genetics
Seawater/*microbiology
Staphylococcus/*genetics
Bacterial Proteins/chemistry ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Contig Mapping ; Gene Expression Profiling ; Genome, Bacterial ; India ; Metabolic Networks and Pathways/genetics ; Protein Structure, Tertiary ; RNA, Bacterial/chemistry ; RNA, Bacterial/metabolism ; Staphylococcus/isolation & purification
Czasopismo naukowe
Tytuł :
CSAR-web: a web server of contig scaffolding using algebraic rearrangements.
Autorzy :
Chen KT; Department of Computer Science, National Tsing Hua University, Hsinchu 30013, Taiwan.
Lu CL; Department of Computer Science, National Tsing Hua University, Hsinchu 30013, Taiwan.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2018 Jul 02; Vol. 46 (W1), pp. W55-W59.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res.
MeSH Terms :
Contig Mapping*
Internet*
Software*
Genome/*genetics
Algorithms ; Computational Biology/methods ; Genomics/methods ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
The red deer Cervus elaphus genome CerEla1.0: sequencing, annotating, genes, and chromosomes.
Autorzy :
Bana NÁ; Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.; Department of Animal Breeding Technology and Management Faculty of Agricultural and Environmental Sciences, Kaposvár University, Guba Sándor str. 40, Kaposvár, 7400, Hungary.
Nyiri A; Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
Nagy J; Department of Animal Breeding Technology and Management Faculty of Agricultural and Environmental Sciences, Kaposvár University, Guba Sándor str. 40, Kaposvár, 7400, Hungary.
Frank K; Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.; Department of Animal Breeding Technology and Management Faculty of Agricultural and Environmental Sciences, Kaposvár University, Guba Sándor str. 40, Kaposvár, 7400, Hungary.
Nagy T; Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
Stéger V; Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
Schiller M; Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.
Lakatos P; 1st Department of Internal Medicine, Semmelweis University, Korányi Sándor str. 2/a, Budapest, 1083, Hungary.
Sugár L; Department of Animal Breeding Technology and Management Faculty of Agricultural and Environmental Sciences, Kaposvár University, Guba Sándor str. 40, Kaposvár, 7400, Hungary.
Horn P; Department of Animal Breeding Technology and Management Faculty of Agricultural and Environmental Sciences, Kaposvár University, Guba Sándor str. 40, Kaposvár, 7400, Hungary.
Barta E; Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary.; Department of Biochemistry and Molecular Biology, University of Debrecen, Nagyerdei ave 98, Debrecen, 4032, Hungary.
Orosz L; Agricultural Biotechnology Institute, National Agricultural Research and Innovation Center, Szent-Györgyi Albert str. 4, Gödöllő, 2100, Hungary. .; Department of Genetics, Faculty of Sciences, Eötvös Loránd University, Pázmány Péter ave. 1/c, Budapest, 1117, Hungary. .
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Źródło :
Molecular genetics and genomics : MGG [Mol Genet Genomics] 2018 Jun; Vol. 293 (3), pp. 665-684. Date of Electronic Publication: 2018 Jan 02.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Springer-Verlag Country of Publication: Germany NLM ID: 101093320 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1617-4623 (Electronic) Linking ISSN: 16174623 NLM ISO Abbreviation: Mol. Genet. Genomics Subsets: MEDLINE
MeSH Terms :
Contig Mapping/*methods
Deer/*genetics
Sequence Analysis, DNA/*methods
Animals ; Animals, Domestic/genetics ; Cattle ; Chromosome Mapping/methods ; Chromosome Mapping/veterinary ; Contig Mapping/veterinary ; Genome-Wide Association Study ; Molecular Sequence Annotation ; Sequence Analysis, DNA/veterinary
Czasopismo naukowe
Tytuł :
Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes.
Autorzy :
Kogawa M; Department of Life Science and Medical Bioscience, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo, 162-8480, Japan.; Computational Bio Big-Data Open Innovation Laboratory, AIST-Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo, 169-0072, Japan.
Hosokawa M; Research Organization for Nano & Life Innovation, Waseda University, 513 Wasedatsurumaki-cho, Shinjuku-ku, Tokyo, 162-0041, Japan.; PRESTO, Japan Science and Technology Agency (JST), 5-3 Yonban-cho, Chiyoda-ku, Tokyo, 102-0075, Japan.
Nishikawa Y; Department of Life Science and Medical Bioscience, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo, 162-8480, Japan.
Mori K; Computational Bio Big-Data Open Innovation Laboratory, AIST-Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo, 169-0072, Japan.
Takeyama H; Department of Life Science and Medical Bioscience, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo, 162-8480, Japan. .; Computational Bio Big-Data Open Innovation Laboratory, AIST-Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo, 169-0072, Japan. .; Research Organization for Nano & Life Innovation, Waseda University, 513 Wasedatsurumaki-cho, Shinjuku-ku, Tokyo, 162-0041, Japan. .
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Źródło :
Scientific reports [Sci Rep] 2018 Feb 01; Vol. 8 (1), pp. 2059. Date of Electronic Publication: 2018 Feb 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE
MeSH Terms :
Gastrointestinal Microbiome*
Genome, Bacterial*
Contig Mapping/*methods
Single-Cell Analysis/*methods
Whole Genome Sequencing/*methods
Animals ; Bacillus subtilis/genetics ; Contig Mapping/standards ; Escherichia coli/genetics ; Male ; Mice ; Mice, Inbred ICR ; Polymorphism, Single Nucleotide ; Single-Cell Analysis/standards ; Whole Genome Sequencing/standards
Czasopismo naukowe
Tytuł :
Whole-genome sequencing of wild Siberian musk deer (Moschus moschiferus) provides insights into its genetic features.
Autorzy :
Yi L; Inner Mongolia Agricultural University / Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture and Rural Affairs, Hohhot, 010018, China.
Dalai M; Affiliated Hospital of Inner Mongolia Medical University, Hohhot, 010050, China. .
Su R; Inner Mongolia Agricultural University / Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture and Rural Affairs, Hohhot, 010018, China.
Lin W; Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China.
Erdenedalai M; Institute of Traditional Medicine and Technology, Ulaanbaatar, Mongolia.
Luvsantseren B; Institute of Traditional Medicine and Technology, Ulaanbaatar, Mongolia.
Chimedtseren C; Institute of Traditional Medicine and Technology, Ulaanbaatar, Mongolia. .
Wang Z; Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute of Nutrition and Health, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China. .
Hasi S; Inner Mongolia Agricultural University / Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture and Rural Affairs, Hohhot, 010018, China. .
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Źródło :
BMC genomics [BMC Genomics] 2020 Jan 31; Vol. 21 (1), pp. 108. Date of Electronic Publication: 2020 Jan 31.
Typ publikacji :
Journal Article
Journal Info :
Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
MeSH Terms :
Contig Mapping/*veterinary
Deer/*genetics
Gene Expression Profiling/*veterinary
Whole Genome Sequencing/*veterinary
Adaptation, Biological ; Animals ; Deer/classification ; Evolution, Molecular ; Female ; Genome Size ; Molecular Sequence Annotation ; Phylogeny ; Population Density ; Sequence Analysis, RNA/veterinary
Czasopismo naukowe

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