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Tytuł:
The European Bioinformatics Institute (EMBL-EBI) in 2021.
Autorzy:
Cantelli G; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Bateman A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Brooksbank C; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Petrov AI; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Malik-Sheriff RS; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Ide-Smith M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Hermjakob H; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Apweiler R; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Birney E; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
McEntyre J; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 Jan 07; Vol. 50 (D1), pp. D11-D19.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Factual*/economics
Databases, Factual*/statistics & numerical data
Computational Biology/*education
Computational Biology/*methods
Academies and Institutes ; Artificial Intelligence ; COVID-19 ; Databases, Pharmaceutical ; Databases, Protein ; Europe ; Genome, Human ; Humans ; Information Storage and Retrieval ; RNA, Untranslated/genetics ; SARS-CoV-2/genetics
Czasopismo naukowe
Tytuł:
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.
Corporate Authors:
CNCB-NGDC Members and Partners
Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 Jan 07; Vol. 50 (D1), pp. D27-D38.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Factual*
Animals ; China ; Computational Biology ; Databases, Genetic ; Databases, Pharmaceutical ; Dogs ; Epigenome ; Genome, Human ; Genome, Viral ; Genomics ; Humans ; Methylation ; Neoplasms/genetics ; Neoplasms/pathology ; Regeneration ; SARS-CoV-2/genetics ; Single-Cell Analysis ; Software ; Synthetic Biology
Czasopismo naukowe
Tytuł:
The 2022 Nucleic Acids Research database issue and the online molecular biology database collection.
Autorzy:
Rigden DJ; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK.
Fernández XM; Institut Curie, 25 rue d'Ulm, 75005 Paris, France.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 Jan 07; Vol. 50 (D1), pp. D1-D10.
Typ publikacji:
Editorial; Introductory Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Factual*
Molecular Biology*
Animals ; COVID-19 ; Databases, Nucleic Acid ; Databases, Protein ; Genome, Microbial ; Genome, Viral ; Humans ; Mice ; Plants/genetics ; Protein Processing, Post-Translational ; Proteome ; SARS-CoV-2/genetics ; Signal Transduction
Czasopismo naukowe
Tytuł:
SuperTCM: A biocultural database combining biological pathways and historical linguistic data of Chinese Materia Medica for drug development.
Autorzy:
Chen Q; Structural Bioinformatics Group, Institute for Physiology, 10115 Berlin, Germany; China Scholarship Council (CSC), Beijing 100044, China.
Springer L; King's College London, University College London, UK; Sichuan University, Key Institute for Chinese Folk Culture, China.
Gohlke BO; Structural Bioinformatics Group, Institute for Physiology, 10115 Berlin, Germany; Science-IT, Germany.
Goede A; Structural Bioinformatics Group, Institute for Physiology, 10115 Berlin, Germany.
Dunkel M; Structural Bioinformatics Group, Institute for Physiology, 10115 Berlin, Germany; Science-IT, Germany.
Abel R; Structural Bioinformatics Group, Institute for Physiology, 10115 Berlin, Germany.
Gallo K; Structural Bioinformatics Group, Institute for Physiology, 10115 Berlin, Germany.
Preissner S; Structural Bioinformatics Group, Institute for Physiology, 10115 Berlin, Germany.
Eckert A; Structural Bioinformatics Group, Institute for Physiology, 10115 Berlin, Germany; Science-IT, Germany.
Seshadri L; Science-IT, Germany.
Preissner R; Structural Bioinformatics Group, Institute for Physiology, 10115 Berlin, Germany; Science-IT, Germany. Electronic address: .
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Źródło:
Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie [Biomed Pharmacother] 2021 Dec; Vol. 144, pp. 112315. Date of Electronic Publication: 2021 Oct 15.
Typ publikacji:
Journal Article
MeSH Terms:
Databases, Factual*
Linguistics*
Medicine, Chinese Traditional*
Network Pharmacology*
Systems Integration*
Drugs, Chinese Herbal/*therapeutic use
Materia Medica/*therapeutic use
Animals ; Databases, Chemical ; Databases, Pharmaceutical ; Drugs, Chinese Herbal/adverse effects ; Humans ; International Classification of Diseases ; Materia Medica/adverse effects ; Pharmacopoeias as Topic
Czasopismo naukowe
Tytuł:
Complex Portal 2022: new curation frontiers.
Autorzy:
Meldal BHM; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Perfetto L; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; Fondazione Human Technopole, 20157 Milan, Italy.
Combe C; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK.
Lubiana T; Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, Av. Professor Lineu Prestes 580, CEP 05508-000 São Paulo SP, Brasil.
Ferreira Cavalcante JV; Bioinformatics Multidisciplinary Environment (BioME), Digital Metropolis Institute, Federal University of Rio Grande do Norte, Av. Odilon Gomes de Lima 1722, Capim Macio, 59078-400 Natal/RN, Brasil.
Bye-A-Jee H; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Waagmeester A; Micelio, Veltwijcklaan 305, 2180 Ekeren, Belgium.
Del-Toro N; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Shrivastava A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Barrera E; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Wong E; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA.
Mlecnik B; Laboratory of Integrative Cancer Immunology, INSERM, 75006 Paris, France.; Equipe Labellisée Ligue Contre le Cancer, 75006 Paris, France.; Centre de Recherche des Cordeliers, Sorbonne Université, Université de Paris, 75006 Paris, France.; Inovarion, 75005 Paris, France.
Bindea G; Laboratory of Integrative Cancer Immunology, INSERM, 75006 Paris, France.; Equipe Labellisée Ligue Contre le Cancer, 75006 Paris, France.; Centre de Recherche des Cordeliers, Sorbonne Université, Université de Paris, 75006 Paris, France.
Panneerselvam K; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Willighagen E; Dept of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Universiteitssingel 50, 6229 ER Maastricht, The Netherlands.
Rappsilber J; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK.; Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
Porras P; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Hermjakob H; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Orchard S; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 Jan 07; Vol. 50 (D1), pp. D578-D586.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Protein*
Data Curation/*methods
Multiprotein Complexes/*chemistry
Coronavirus/chemistry ; Data Visualization ; Databases, Chemical ; Enzymes/chemistry ; Enzymes/metabolism ; Escherichia coli/chemistry ; Humans ; International Cooperation ; Molecular Sequence Annotation ; Multiprotein Complexes/metabolism ; User-Computer Interface
Czasopismo naukowe
Tytuł:
DNA Data Bank of Japan (DDBJ) update report 2021.
Autorzy:
Okido T; Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Kodama Y; Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Mashima J; Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Kosuge T; Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Fujisawa T; Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Ogasawara O; Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 Jan 07; Vol. 50 (D1), pp. D102-D105.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Genetic*
Databases, Nucleic Acid ; Genome, Microbial ; Japan ; Metabolomics ; SARS-CoV-2/genetics ; Transcriptome
Czasopismo naukowe
Tytuł:
Manual Annotation Studio (MAS): a collaborative platform for manual functional annotation of viral and microbial genomes.
Autorzy:
Lueder MR; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Cer RZ; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.
Patrick M; Mount St. Mary's University, Emmitsburg, MD, USA.
Voegtly LJ; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Long KA; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Rice GK; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Bishop-Lilly KA; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA. .
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Źródło:
BMC genomics [BMC Genomics] 2021 Oct 09; Vol. 22 (1), pp. 733. Date of Electronic Publication: 2021 Oct 09.
Typ publikacji:
Journal Article
MeSH Terms:
Databases, Genetic*
Genome, Microbial*
Databases, Protein ; Genome, Viral ; Software
Czasopismo naukowe
Tytuł:
Database resources of the national center for biotechnology information.
Autorzy:
Sayers EW; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Bolton EE; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Brister JR; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Canese K; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Chan J; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Comeau DC; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Connor R; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Funk K; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Kelly C; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Kim S; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Madej T; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Marchler-Bauer A; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Lanczycki C; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Lathrop S; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Lu Z; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Murphy T; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Phan L; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Skripchenko Y; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Tse T; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Wang J; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Williams R; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Trawick BW; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Pruitt KD; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Sherry ST; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 Jan 07; Vol. 50 (D1), pp. D20-D26.
Typ publikacji:
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms:
Biotechnology/*trends
Databases, Genetic/*trends
Databases, Chemical ; Databases, Nucleic Acid ; Databases, Protein ; Humans ; Internet ; National Library of Medicine (U.S.) ; PubMed ; United States
Czasopismo naukowe
Tytuł:
Molecular-level similarity search brings computing to DNA data storage.
Autorzy:
Bee C; Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA.
Chen YJ; Microsoft Research, Redmond, WA, USA.
Queen M; Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA.
Ward D; Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA.
Liu X; Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA.
Organick L; Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA.
Seelig G; Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA.; Department of Electrical & Computer Engineering, University of Washington, Seattle, WA, USA.
Strauss K; Microsoft Research, Redmond, WA, USA. .
Ceze L; Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA. .
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Źródło:
Nature communications [Nat Commun] 2021 Aug 06; Vol. 12 (1), pp. 4764. Date of Electronic Publication: 2021 Aug 06.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Databases, Genetic*
Information Storage and Retrieval*
Computational Biology/*methods
DNA/*chemistry
Algorithms ; Base Sequence ; Computer Simulation ; DNA/genetics ; DNA Probes ; Databases, Factual ; Neural Networks, Computer
Czasopismo naukowe
Tytuł:
A database resource and online analysis tools for coronaviruses on a historical and global scale.
Autorzy:
Zhu Z; School of Life Sciences, Chongqing University, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China.
Meng K; College of Veterinary Medicine, China Agricultural University, HaiDian District, Beijing, 100094, China.
Liu G; School of Life Sciences, Chongqing University, No. 55 Daxuecheng South Rd., Shapingba, Chongqing, 401331, China.
Meng G; College of Veterinary Medicine, China Agricultural University, HaiDian District, Beijing, 100094, China.
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Źródło:
Database : the journal of biological databases and curation [Database (Oxford)] 2021 Aug 05; Vol. 2020.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Genetic*
Genes, Viral*
Genome, Viral*
Proteome*
COVID-19/*virology
SARS-CoV-2/*pathogenicity
Viral Proteins/*genetics
Viral Proteins/*metabolism
Animals ; COVID-19/diagnosis ; COVID-19/epidemiology ; COVID-19/therapy ; Data Mining ; Databases, Protein ; Evolution, Molecular ; Gene Expression Regulation, Viral ; Humans ; Internet ; Phylogeny ; Protein Conformation ; SARS-CoV-2/genetics ; SARS-CoV-2/metabolism ; Structure-Activity Relationship
Czasopismo naukowe
Tytuł:
TCM-Blast for traditional Chinese medicine genome alignment with integrated resources.
Autorzy:
Chen Z; School of Chinese Materia Medica, Beijing University of Chinese Medicine, Yangguang South Avenue, Fangshan District, Beijing, 102488, China. .; Research Center of TCM-Information Engineering, State Administration of Traditional Chinese Medicine of The Peoples Republic of China, Yangguang South Avenue, Fangshan District, Beijing, 102488, China. .
Li J; School of Chinese Materia Medica, Beijing University of Chinese Medicine, Yangguang South Avenue, Fangshan District, Beijing, 102488, China.; Research Center of TCM-Information Engineering, State Administration of Traditional Chinese Medicine of The Peoples Republic of China, Yangguang South Avenue, Fangshan District, Beijing, 102488, China.
Hou N; School of Chinese Materia Medica, Beijing University of Chinese Medicine, Yangguang South Avenue, Fangshan District, Beijing, 102488, China.; Research Center of TCM-Information Engineering, State Administration of Traditional Chinese Medicine of The Peoples Republic of China, Yangguang South Avenue, Fangshan District, Beijing, 102488, China.
Zhang Y; School of Chinese Materia Medica, Beijing University of Chinese Medicine, Yangguang South Avenue, Fangshan District, Beijing, 102488, China.; Research Center of TCM-Information Engineering, State Administration of Traditional Chinese Medicine of The Peoples Republic of China, Yangguang South Avenue, Fangshan District, Beijing, 102488, China.
Qiao Y; School of Chinese Materia Medica, Beijing University of Chinese Medicine, Yangguang South Avenue, Fangshan District, Beijing, 102488, China. .; Research Center of TCM-Information Engineering, State Administration of Traditional Chinese Medicine of The Peoples Republic of China, Yangguang South Avenue, Fangshan District, Beijing, 102488, China. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2021 Jul 17; Vol. 21 (1), pp. 339. Date of Electronic Publication: 2021 Jul 17.
Typ publikacji:
Evaluation Study; Journal Article
MeSH Terms:
DNA, Plant*
Databases, Genetic*
Genome, Plant*
Medicine, Chinese Traditional*
Plants, Medicinal/*genetics
Databases, Nucleic Acid ; Internet ; Plant Proteins/genetics ; Sequence Alignment ; User-Computer Interface
Czasopismo naukowe
Tytuł:
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing.
Autorzy:
Harrison PW; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Lopez R; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Rahman N; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Allen SG; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Aslam R; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Buso N; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Cummins C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Fathy Y; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Felix E; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Glont M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Jayathilaka S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Kadam S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Kumar M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Lauer KB; ELIXIR, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Malhotra G; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Mosaku A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Edbali O; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Park YM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Parton A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Pearce M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Estrada Pena JF; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Rossetto J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Russell C; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Selvakumar S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Sitjà XP; ELIXIR, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Sokolov A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Thorne R; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Ventouratou M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Walter P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Yordanova G; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Zadissa A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Cochrane G; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Blomberg N; ELIXIR, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Apweiler R; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2021 Jul 02; Vol. 49 (W1), pp. W619-W623.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Biomedical Research*
COVID-19*/epidemiology
COVID-19*/genetics
COVID-19*/virology
Databases, Factual*
Datasets as Topic*
Information Dissemination*
Open Access Publishing*
SARS-CoV-2*/chemistry
SARS-CoV-2*/genetics
SARS-CoV-2*/metabolism
SARS-CoV-2*/ultrastructure
Databases, Bibliographic ; Disease Outbreaks ; Humans ; Pandemics ; Time Factors ; Viral Proteins/chemistry ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł:
Sequence data: expand comprehensive access.
Autorzy:
Roberts RJ
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Źródło:
Nature [Nature] 2021 Mar; Vol. 591 (7849), pp. 202.
Typ publikacji:
Historical Article; Letter
MeSH Terms:
Databases, Genetic*/history
Databases, Genetic*/trends
Information Dissemination*
Sequence Analysis, DNA*
SARS-CoV-2/*genetics
COVID-19/diagnosis ; COVID-19/epidemiology ; COVID-19/virology ; COVID-19 Vaccines ; China ; Databases, Nucleic Acid/history ; History, 20th Century ; History, 21st Century ; Japan ; Polymerase Chain Reaction
Opinia redakcyjna
Tytuł:
Database resources of the National Center for Biotechnology Information.
Autorzy:
Sayers EW; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Beck J; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Bolton EE; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Bourexis D; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Brister JR; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Canese K; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Comeau DC; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Funk K; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Kim S; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Klimke W; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Marchler-Bauer A; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Landrum M; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Lathrop S; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Lu Z; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Madden TL; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
O'Leary N; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Phan L; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Rangwala SH; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Schneider VA; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Skripchenko Y; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Wang J; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Ye J; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Trawick BW; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Pruitt KD; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Sherry ST; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Pokaż więcej
Źródło:
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D10-D17.
Typ publikacji:
Journal Article; Research Support, N.I.H., Intramural; Review
MeSH Terms:
Databases, Genetic*
National Library of Medicine (U.S.)*
Computational Biology/methods ; Databases, Chemical ; Databases, Nucleic Acid ; Databases, Protein ; Genomics/methods ; Humans ; PubMed ; United States
Czasopismo naukowe
Tytuł:
Comparative Toxicogenomics Database (CTD): update 2021.
Autorzy:
Davis AP; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Grondin CJ; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Johnson RJ; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Sciaky D; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Wiegers J; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Wiegers TC; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.
Mattingly CJ; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA.; Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D1138-D1143.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Databases, Factual*
Gene-Environment Interaction*
Genome, Human/*drug effects
Genomics/*methods
Prescription Drugs/*pharmacology
Xenobiotics/*toxicity
Databases, Chemical ; Databases, Genetic ; Genotype ; Humans ; Internet ; Knowledge Bases ; Organ Specificity ; Phenotype ; Prescription Drugs/chemistry ; Software ; Toxicogenetics/methods ; Xenobiotics/chemistry
Czasopismo naukowe
Tytuł:
Integration of the Drug-Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts.
Autorzy:
Freshour SL; Department of Medicine, Division of Oncology, Washington University School of Medicine, St Louis, MO 63110, USA.; McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.
Kiwala S; McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.
Cotto KC; Department of Medicine, Division of Oncology, Washington University School of Medicine, St Louis, MO 63110, USA.; McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.
Coffman AC; McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.
McMichael JF; McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.
Song JJ; Department of Medicine, Division of Oncology, Washington University School of Medicine, St Louis, MO 63110, USA.; McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.
Griffith M; Department of Medicine, Division of Oncology, Washington University School of Medicine, St Louis, MO 63110, USA.; McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.; Department of Genetics, Washington University School of Medicine, St Louis, MO 63110, USA.; Siteman Cancer Center, Washington University School of Medicine, St Louis, MO 63110, USA.
Griffith OL; Department of Medicine, Division of Oncology, Washington University School of Medicine, St Louis, MO 63110, USA.; McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.; Department of Genetics, Washington University School of Medicine, St Louis, MO 63110, USA.; Siteman Cancer Center, Washington University School of Medicine, St Louis, MO 63110, USA.
Wagner AH; Department of Medicine, Division of Oncology, Washington University School of Medicine, St Louis, MO 63110, USA.; McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63108, USA.; The Steve and Cindy Rasmussen Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH 43215, USA.; Department of Pediatrics, The Ohio State University College of Medicine, Columbus, OH 43210, USA.
Pokaż więcej
Źródło:
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D1144-D1151.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Crowdsourcing*
Databases, Factual*
Databases, Genetic*
Drugs, Investigational/*pharmacology
Genome, Human/*drug effects
Prescription Drugs/*pharmacology
Databases, Chemical ; Drugs, Investigational/chemistry ; Genotype ; Humans ; Internet ; Knowledge Bases ; Phenotype ; Prescription Drugs/chemistry ; Software
Czasopismo naukowe
Tytuł:
Microbial natural product databases: moving forward in the multi-omics era.
Autorzy:
van Santen JA; Department of Chemistry, Simon Fraser University, Burnaby, CA, USA. .
Kautsar SA
Medema MH
Linington RG
Pokaż więcej
Źródło:
Natural product reports [Nat Prod Rep] 2021 Jan 01; Vol. 38 (1), pp. 264-278. Date of Electronic Publication: 2020 Aug 28.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Biological Products*
Databases, Factual*
Microbiology*
Anti-Bacterial Agents ; Biosynthetic Pathways/genetics ; Databases, Chemical ; Databases, Pharmaceutical ; Information Storage and Retrieval ; Metabolomics ; Multigene Family
Czasopismo naukowe
Tytuł:
ExAgBov: A public database of annotated variations from hundreds of bovine whole-exome sequencing samples.
Autorzy:
Raz R; Department of Ruminant Science, Institute of Animal Sciences, Agricultural Research Organization, The Volcani Center, Rishon LeZion, 7505101, Israel.; Department of Animal Sciences, Robert H. Smith Faculty of Agriculture, Food and Environment, the Hebrew University, Rehovot, 76100, Israel.
Roth Z; Department of Ruminant Science, Institute of Animal Sciences, Agricultural Research Organization, The Volcani Center, Rishon LeZion, 7505101, Israel.
Gershoni M; Department of Ruminant Science, Institute of Animal Sciences, Agricultural Research Organization, The Volcani Center, Rishon LeZion, 7505101, Israel. .
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Źródło:
Scientific data [Sci Data] 2022 Aug 02; Vol. 9 (1), pp. 469. Date of Electronic Publication: 2022 Aug 02.
Typ publikacji:
Dataset; Journal Article
MeSH Terms:
Cattle*/genetics
Databases, Genetic*
Whole Exome Sequencing*
Animals ; Chromosome Mapping ; Exome ; High-Throughput Nucleotide Sequencing ; INDEL Mutation ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Tytuł:
Gene Updater: a web tool that autocorrects and updates for Excel misidentified gene names.
Autorzy:
Koh CWT; Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, 169857, Singapore.
Ooi JSG; Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, 169857, Singapore.
Joly GLC; Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, 169857, Singapore.
Chan KR; Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, 169857, Singapore. .
Pokaż więcej
Źródło:
Scientific reports [Sci Rep] 2022 Jul 26; Vol. 12 (1), pp. 12743. Date of Electronic Publication: 2022 Jul 26.
Typ publikacji:
Journal Article
MeSH Terms:
Databases, Genetic*
Names*
Data Collection ; Humans ; Internet ; Records ; Software ; Translocation, Genetic
Czasopismo naukowe

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