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Wyszukujesz frazę ""DNA, Bacterial"" wg kryterium: Temat


Tytuł :
Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins.
Autorzy :
Stracy M; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK. Electronic address: .
Schweizer J; Max Planck Institute for Dynamics of Complex Technical Systems, 39106 Magdeburg, Germany.
Sherratt DJ; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Kapanidis AN; Biological Physics Research Group, Clarendon Laboratory, Department of Physics, University of Oxford, Oxford OX1 3PU, UK.
Uphoff S; Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK. Electronic address: .
Lesterlin C; Molecular Microbiology and Structural Biochemistry (MMSB), Université Lyon 1, CNRS, INSERM, UMR5086, 69007 Lyon, France. Electronic address: .
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Źródło :
Molecular cell [Mol Cell] 2021 Apr 01; Vol. 81 (7), pp. 1499-1514.e6. Date of Electronic Publication: 2021 Feb 22.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA, Bacterial/*metabolism
DNA-Binding Proteins/*metabolism
Escherichia coli/*metabolism
Escherichia coli Proteins/*metabolism
DNA, Bacterial/genetics ; DNA-Binding Proteins/genetics ; Escherichia coli/genetics ; Escherichia coli Proteins/genetics
Czasopismo naukowe
Tytuł :
Endophytic Fungi from Dalbergia odorifera T. Chen Producing Naringenin Inhibit the Growth of Staphylococcus aureus by Interfering with Cell Membrane, DNA, and Protein.
Autorzy :
Gao Y; School of Pharmacy, Harbin University of Commerce, Harbin, Heilongjiang, China.; Post-Doctoral Research Center of Traditional Chinese Medicine, Harbin University of Commerce, Harbin, Heilongjiang, China.
Ji Y; School of Pharmacy, Harbin University of Commerce, Harbin, Heilongjiang, China.; Post-Doctoral Research Center of Traditional Chinese Medicine, Harbin University of Commerce, Harbin, Heilongjiang, China.
Li W; School of Pharmacy, Harbin University of Commerce, Harbin, Heilongjiang, China.; Post-Doctoral Research Center of Traditional Chinese Medicine, Harbin University of Commerce, Harbin, Heilongjiang, China.
Luo J; School of Pharmacy, Harbin University of Commerce, Harbin, Heilongjiang, China.
Wang F; School of Pharmacy, Harbin University of Commerce, Harbin, Heilongjiang, China.
Zhang X; School of Pharmacy, Harbin University of Commerce, Harbin, Heilongjiang, China.
Niu Z; School of Pharmacy, Harbin University of Commerce, Harbin, Heilongjiang, China.
Zhou L; School of Pharmacy, Harbin University of Commerce, Harbin, Heilongjiang, China.
Yan L; School of Pharmacy, Harbin University of Commerce, Harbin, Heilongjiang, China.
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Źródło :
Journal of medicinal food [J Med Food] 2021 Feb; Vol. 24 (2), pp. 116-123. Date of Electronic Publication: 2021 Feb 01.
Typ publikacji :
Journal Article
MeSH Terms :
Bacterial Proteins*/drug effects
Cell Membrane*/drug effects
DNA, Bacterial*/drug effects
Dalbergia*/microbiology
Flavanones*/pharmacology
Fungi*/chemistry
Staphylococcus aureus*/drug effects
Anti-Bacterial Agents/pharmacology ; Microbial Sensitivity Tests
Czasopismo naukowe
Tytuł :
Direct loop-mediated isothermal amplification (LAMP) assay for rapid on-site detection of Bifidobacterium longum subspecies longum, infantis, and suis in probiotic products.
Autorzy :
Kim MJ; Institute of Life Sciences & Resources and Department of Food Science & Biotechnology, Kyung Hee University, Yongin 17104, Republic of Korea.
Shin SW; Institute of Life Sciences & Resources and Department of Food Science & Biotechnology, Kyung Hee University, Yongin 17104, Republic of Korea.
Kim HB; Institute of Life Sciences & Resources and Department of Food Science & Biotechnology, Kyung Hee University, Yongin 17104, Republic of Korea.
Kim E; Institute of Life Sciences & Resources and Department of Food Science & Biotechnology, Kyung Hee University, Yongin 17104, Republic of Korea.
Kim HY; Institute of Life Sciences & Resources and Department of Food Science & Biotechnology, Kyung Hee University, Yongin 17104, Republic of Korea. Electronic address: .
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Źródło :
Food chemistry [Food Chem] 2021 Jun 01; Vol. 346, pp. 128887. Date of Electronic Publication: 2020 Dec 24.
Typ publikacji :
Journal Article
MeSH Terms :
Bifidobacterium/*isolation & purification
Bifidobacterium longum subspecies infantis/*isolation & purification
DNA, Bacterial/*analysis
Probiotics/*analysis
Bifidobacterium/genetics ; Bifidobacterium longum subspecies infantis/genetics ; DNA, Bacterial/metabolism ; Humans ; Limit of Detection ; Molecular Diagnostic Techniques ; Nucleic Acid Amplification Techniques
SCR Protocol :
LAMP assay
Czasopismo naukowe
Tytuł :
Nonspecific DNA binding by P1 ParA determines the distribution of plasmid partition and repressor activities.
Autorzy :
Baxter JC; Department of Molecular Genetics, University of Toronto, Toronto, Ontario Canada.
Waples WG; Department of Molecular Genetics, University of Toronto, Toronto, Ontario Canada.
Funnell BE; Department of Molecular Genetics, University of Toronto, Toronto, Ontario Canada. Electronic address: .
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Źródło :
The Journal of biological chemistry [J Biol Chem] 2020 Dec 11; Vol. 295 (50), pp. 17298-17309. Date of Electronic Publication: 2020 Oct 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Bacteriophage P1/*metabolism
Chromosomes, Bacterial/*metabolism
DNA, Bacterial/*metabolism
Escherichia coli/*metabolism
Viral Proteins/*metabolism
Amino Acid Substitution ; Bacteriophage P1/chemistry ; Bacteriophage P1/genetics ; Chromosomes, Bacterial/chemistry ; Chromosomes, Bacterial/genetics ; DNA Primase/chemistry ; DNA Primase/genetics ; DNA Primase/metabolism ; DNA, Bacterial/chemistry ; DNA, Bacterial/genetics ; Escherichia coli/chemistry ; Escherichia coli/genetics ; Escherichia coli/virology ; Escherichia coli Proteins/chemistry ; Escherichia coli Proteins/genetics ; Escherichia coli Proteins/metabolism ; Mutation, Missense ; Operator Regions, Genetic ; Viral Proteins/chemistry ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł :
The RNA Polymerase α Subunit Recognizes the DNA Shape of the Upstream Promoter Element.
Autorzy :
Lara-Gonzalez S; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, New Jersey 08854, United States.
Dantas Machado AC; Quantitative and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, United States.
Rao S; Quantitative and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, United States.
Napoli AA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, New Jersey 08854, United States.
Birktoft J; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, New Jersey 08854, United States.
Di Felice R; Quantitative and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, United States.; Department of Physics and Astronomy, University of Southern California, Los Angeles, California 90089, United States.; CNR-NANO Modena, Via Campi 213/A, 41125 Modena, Italy.
Rohs R; Quantitative and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, United States.; Department of Physics and Astronomy, University of Southern California, Los Angeles, California 90089, United States.; Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States.; Department of Computer Science, University of Southern California, Los Angeles, California 90089, United States.
Lawson CL; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, New Jersey 08854, United States.; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, 174 Frelinghuysen Road, Piscataway, New Jersey 08854, United States.
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Źródło :
Biochemistry [Biochemistry] 2020 Dec 08; Vol. 59 (48), pp. 4523-4532. Date of Electronic Publication: 2020 Nov 18.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA, Bacterial/*chemistry
DNA, Bacterial/*metabolism
DNA-Directed RNA Polymerases/*chemistry
DNA-Directed RNA Polymerases/*metabolism
Escherichia coli Proteins/*chemistry
Escherichia coli Proteins/*metabolism
Binding Sites ; Crystallography, X-Ray ; Cyclic AMP Receptor Protein/chemistry ; Cyclic AMP Receptor Protein/genetics ; Cyclic AMP Receptor Protein/metabolism ; DNA, Bacterial/genetics ; DNA-Directed RNA Polymerases/genetics ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Escherichia coli Proteins/genetics ; Gene Knockout Techniques ; Genes, Bacterial ; Models, Molecular ; Mutation ; Nucleic Acid Conformation ; Promoter Regions, Genetic ; Protein Domains ; Static Electricity
Czasopismo naukowe
Tytuł :
Responses of DNA Mismatch Repair Proteins to a Stable G-Quadruplex Embedded into a DNA Duplex Structure.
Autorzy :
Pavlova AV; Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
Monakhova MV; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
Ogloblina AM; Institute of Carcinogenesis, N.N. Blokhin NMRCO, Kashirskoe Shosse 24, 115478 Moscow, Russia.
Andreeva NA; Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
Laptev GY; Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.; Faculty of Fundamental Medicine, Lomonosov Moscow State University, Lomonosovsky Avenue 27/1, 119991 Moscow, Russia.
Polshakov VI; Faculty of Fundamental Medicine, Lomonosov Moscow State University, Lomonosovsky Avenue 27/1, 119991 Moscow, Russia.
Gromova ES; Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
Zvereva MI; Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
Yakubovskaya MG; Institute of Carcinogenesis, N.N. Blokhin NMRCO, Kashirskoe Shosse 24, 115478 Moscow, Russia.
Oretskaya TS; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
Kubareva EA; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
Dolinnaya NG; Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2020 Nov 20; Vol. 21 (22). Date of Electronic Publication: 2020 Nov 20.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Mismatch Repair*
G-Quadruplexes*
Genome, Bacterial*
DNA, Bacterial/*genetics
Escherichia coli/*genetics
Rhodobacter sphaeroides/*genetics
Binding Sites ; DNA Breaks, Double-Stranded ; DNA, Bacterial/chemistry ; DNA, Bacterial/metabolism ; Escherichia coli/metabolism ; Escherichia coli Proteins/genetics ; Escherichia coli Proteins/metabolism ; MutL Proteins/genetics ; MutL Proteins/metabolism ; MutS DNA Mismatch-Binding Protein/genetics ; MutS DNA Mismatch-Binding Protein/metabolism ; Nucleotide Motifs ; Protein Binding ; Rhodobacter sphaeroides/metabolism
Czasopismo naukowe
Tytuł :
Development of lipL32 real-time PCR combined with an internal and extraction control for pathogenic Leptospira detection.
Autorzy :
Ahmed AA; Department of Medical Microbiology, OIE and National Collaborating Centre for Reference and Research on Leptospirosis, Amsterdam University Medical Center, University of Amsterdam, Amsterdam, the Netherlands.
Goris MGA; Department of Medical Microbiology, OIE and National Collaborating Centre for Reference and Research on Leptospirosis, Amsterdam University Medical Center, University of Amsterdam, Amsterdam, the Netherlands.
Meijer MC; Department of Medical Microbiology, OIE and National Collaborating Centre for Reference and Research on Leptospirosis, Amsterdam University Medical Center, University of Amsterdam, Amsterdam, the Netherlands.
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Źródło :
PloS one [PLoS One] 2020 Nov 02; Vol. 15 (11), pp. e0241584. Date of Electronic Publication: 2020 Nov 02 (Print Publication: 2020).
Typ publikacji :
Journal Article; Validation Study
MeSH Terms :
Real-Time Polymerase Chain Reaction*
Bacterial Outer Membrane Proteins/*genetics
DNA, Bacterial/*isolation & purification
Leptospira interrogans/*isolation & purification
Leptospirosis/*diagnosis
Lipoproteins/*genetics
DNA, Bacterial/blood ; DNA, Bacterial/urine ; Early Diagnosis ; Humans ; Leptospira interrogans/genetics ; Leptospirosis/blood ; Leptospirosis/microbiology ; Leptospirosis/urine ; Sensitivity and Specificity
Czasopismo naukowe
Tytuł :
Multifunctional Printable Micropattern Array for Digital Nucleic Acid Assay for Microbial Pathogen Detection.
Autorzy :
Choi Y; Department of Chemical & Biomolecular Engineering, Korea Advanced Institute of Science and Technology, 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
Song Y; Department of Chemical & Biomolecular Engineering, Korea Advanced Institute of Science and Technology, 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
Kim YT; Department of Chemical Engineering & Biotechnology, Korea Polytechnic University, 237 Sangidaehak-ro, Siheung-si, Gyeonggi-do 15073, Republic of Korea.
Lee SJ; National Nanofab Center, 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
Lee KG; National Nanofab Center, 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
Im SG; Department of Chemical & Biomolecular Engineering, Korea Advanced Institute of Science and Technology, 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.; KAIST Institute for NanoCentury, Korea Advanced Institute of Science and Technology, 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
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Źródło :
ACS applied materials & interfaces [ACS Appl Mater Interfaces] 2021 Jan 20; Vol. 13 (2), pp. 3098-3108. Date of Electronic Publication: 2021 Jan 10.
Typ publikacji :
Journal Article
MeSH Terms :
Bacteria/*isolation & purification
DNA, Bacterial/*analysis
Methacrylates/*chemistry
Microarray Analysis/*instrumentation
Nucleic Acid Amplification Techniques/*instrumentation
Styrene/*chemistry
Bacteria/genetics ; Bacterial Infections/microbiology ; DNA, Bacterial/genetics ; Equipment Design ; Humans ; Lab-On-A-Chip Devices ; Printing, Three-Dimensional
Czasopismo naukowe
Tytuł :
Plasma microbial cell-free DNA load is associated with mortality in patients with COVID-19.
Autorzy :
Kitsios GD; Division of Pulmonary, Allergy and Critical Care Medicine, Acute Lung Injury Center of Excellence, University of Pittsburgh Medical Center, UPMC Montefiore Hospital, NW 628, 3459 Fifth Avenue, Pittsburgh, PA, 15213, USA. .
Bain W; Division of Pulmonary, Allergy and Critical Care Medicine, Acute Lung Injury Center of Excellence, University of Pittsburgh Medical Center, UPMC Montefiore Hospital, NW 628, 3459 Fifth Avenue, Pittsburgh, PA, 15213, USA.; Veterans Affairs Pittsburgh Healthcare System, Pittsburgh, PA, USA.
Al-Yousif N; Department of Medicine, University of Pittsburgh Medical Center Mercy, Pittsburgh, PA, USA.
Duttagupta R; Karius Inc, Redwood City, CA, USA.
Ahmed AA; Karius Inc, Redwood City, CA, USA.
McVerry BJ; Division of Pulmonary, Allergy and Critical Care Medicine, Acute Lung Injury Center of Excellence, University of Pittsburgh Medical Center, UPMC Montefiore Hospital, NW 628, 3459 Fifth Avenue, Pittsburgh, PA, 15213, USA.
Morris A; Division of Pulmonary, Allergy and Critical Care Medicine, Acute Lung Injury Center of Excellence, University of Pittsburgh Medical Center, UPMC Montefiore Hospital, NW 628, 3459 Fifth Avenue, Pittsburgh, PA, 15213, USA.
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Źródło :
Respiratory research [Respir Res] 2021 Jan 20; Vol. 22 (1), pp. 24. Date of Electronic Publication: 2021 Jan 20.
Typ publikacji :
Letter
MeSH Terms :
COVID-19 Nucleic Acid Testing*
Metagenomics*
COVID-19/*diagnosis
Cell-Free Nucleic Acids/*blood
Coinfection/*diagnosis
DNA, Bacterial/*blood
DNA, Viral/*blood
Pneumonia, Bacterial/*diagnosis
SARS-CoV-2/*genetics
Bacterial Load ; COVID-19/blood ; COVID-19/mortality ; COVID-19/virology ; Cell-Free Nucleic Acids/genetics ; Coinfection/blood ; Coinfection/microbiology ; Coinfection/mortality ; DNA, Bacterial/genetics ; Female ; Humans ; Male ; Middle Aged ; Pneumonia, Bacterial/blood ; Pneumonia, Bacterial/microbiology ; Pneumonia, Bacterial/mortality ; Predictive Value of Tests ; Prognosis ; Prospective Studies ; Sequence Analysis, DNA ; Viral Load
Opinia redakcyjna
Tytuł :
Isolation of Chromosomal and Plasmid DNA from Bifidobacteria.
Autorzy :
Esteban-Torres M; School of Microbiology and APC Microbiome Ireland, University College Cork, Cork, Ireland. .
Ruiz L; Department of Microbiology and Biochemistry of Dairy Products, Instituto de Productos Lácteos de Asturias, IPLA-CSIC, Villaviciosa, Spain.; Instituto de Investigación Sanitaria del Principado de Asturias (ISPA), Oviedo, Asturias, Spain.
Sanchez-Gallardo R; School of Microbiology and APC Microbiome Ireland, University College Cork, Cork, Ireland.
van Sinderen D; School of Microbiology and APC Microbiome Ireland, University College Cork, Cork, Ireland.
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2278, pp. 21-29.
Typ publikacji :
Journal Article
MeSH Terms :
Bifidobacterium/*genetics
DNA, Bacterial/*genetics
Plasmids/*genetics
Chromosomes, Bacterial/genetics ; DNA, Bacterial/isolation & purification ; High-Throughput Nucleotide Sequencing/methods ; Plasmids/isolation & purification ; Whole Genome Sequencing/methods
Czasopismo naukowe
Tytuł :
DNA extraction method influences human milk bacterial profiles.
Autorzy :
Cheema AS; School of Molecular Sciences, The University of Western Australia, Perth, WA, Australia.
Stinson LF; School of Molecular Sciences, The University of Western Australia, Perth, WA, Australia.
Lai CT; School of Molecular Sciences, The University of Western Australia, Perth, WA, Australia.
Geddes DT; School of Molecular Sciences, The University of Western Australia, Perth, WA, Australia.
Payne MS; Division of Obstetrics and Gynaecology, The University of Western Australia, Perth, WA, Australia.
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Źródło :
Journal of applied microbiology [J Appl Microbiol] 2021 Jan; Vol. 130 (1), pp. 142-156. Date of Electronic Publication: 2020 Jul 27.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
DNA, Bacterial/*isolation & purification
Milk, Human/*microbiology
Sequence Analysis, DNA/*methods
Bacteria/classification ; Bacteria/genetics ; Bacteria/isolation & purification ; DNA, Bacterial/genetics ; Humans ; Microbiota/genetics ; RNA, Ribosomal, 16S/genetics ; Reagent Kits, Diagnostic
Czasopismo naukowe
Tytuł :
Methylation of two-component response regulator MtrA in mycobacteria negatively modulates its DNA binding and transcriptional activation.
Autorzy :
Singhal A; CSIR-Institute of Genomics and Integrative Biology, Delhi 110007, India.
Virmani R; Department of Zoology, University of Delhi, Delhi 110007, India.; CSIR-Institute of Genomics and Integrative Biology, Delhi 110007, India.
Naz S; Department of Zoology, University of Delhi, Delhi 110007, India.; National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi 110067, India.
Arora G; CSIR-Institute of Genomics and Integrative Biology, Delhi 110007, India.
Gaur M; Department of Zoology, University of Delhi, Delhi 110007, India.; CSIR-Institute of Genomics and Integrative Biology, Delhi 110007, India.
Kundu P; CSIR-Institute of Genomics and Integrative Biology, Delhi 110007, India.
Sajid A; CSIR-Institute of Genomics and Integrative Biology, Delhi 110007, India.
Misra R; CSIR-Institute of Genomics and Integrative Biology, Delhi 110007, India.
Dabla A; National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi 110067, India.
Kumar S; National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi 110067, India.
Nellissery J; Neurobiology-Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD 20892, U.S.A.
Molle V; DIMNP, CNRS, University of Montpellier, Montpellier, France.
Gerth U; Institute of Microbiology, Ernst-Moritz-Arndt-University Greifswald, D-17487 Greifswald, Germany.
Swaroop A; Neurobiology-Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD 20892, U.S.A.
Sharma K; Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, D-82152 Martinsried, Germany.
Nandicoori VK; National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi 110067, India.
Singh Y; Department of Zoology, University of Delhi, Delhi 110007, India.
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Źródło :
The Biochemical journal [Biochem J] 2020 Dec 11; Vol. 477 (23), pp. 4473-4489.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Promoter Regions, Genetic*
Protein Processing, Post-Translational*
ATP-Binding Cassette Transporters/*metabolism
Bacterial Proteins/*metabolism
DNA, Bacterial/*metabolism
DNA-Binding Proteins/*metabolism
Mycobacterium tuberculosis/*metabolism
ATP-Binding Cassette Transporters/genetics ; Bacterial Proteins/genetics ; DNA, Bacterial/genetics ; DNA-Binding Proteins/genetics ; Methylation ; Mycobacterium tuberculosis/genetics
Czasopismo naukowe
Tytuł :
4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans.
Autorzy :
Gaultney RA; Unité Biologie des Spirochètes, Institut Pasteur, Paris, France.
Vincent AT; Bacterial Symbionts Evolution, INRS-Centre Armand-Frappier, Laval, Quebec, Canada.
Lorioux C; Unité Biologie des Spirochètes, Institut Pasteur, Paris, France.
Coppée JY; Transcriptome and Epigenome Platform, Biomics, Center for Technological Resources and Research (C2RT), Institut Pasteur, Paris, France.
Sismeiro O; Transcriptome and Epigenome Platform, Biomics, Center for Technological Resources and Research (C2RT), Institut Pasteur, Paris, France.
Varet H; Transcriptome and Epigenome Platform, Biomics, Center for Technological Resources and Research (C2RT), Institut Pasteur, Paris, France.; Bioinformatics and Biostatistics Hub, Department of Computational Biology, USR 3756 CNRS, Institut Pasteur, Paris, France.
Legendre R; Transcriptome and Epigenome Platform, Biomics, Center for Technological Resources and Research (C2RT), Institut Pasteur, Paris, France.; Bioinformatics and Biostatistics Hub, Department of Computational Biology, USR 3756 CNRS, Institut Pasteur, Paris, France.
Cockram CA; Spatial Regulation of Genomes Unit, Institut Pasteur, Paris, France.
Veyrier FJ; Bacterial Symbionts Evolution, INRS-Centre Armand-Frappier, Laval, Quebec, Canada.
Picardeau M; Unité Biologie des Spirochètes, Institut Pasteur, Paris, France.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Dec 02; Vol. 48 (21), pp. 12102-12115.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Epigenesis, Genetic*
Genome, Bacterial*
Bacterial Proteins/*genetics
Cytosine/*metabolism
DNA (Cytosine-5-)-Methyltransferases/*genetics
DNA, Bacterial/*metabolism
Leptospira interrogans/*genetics
Animals ; Bacterial Proteins/metabolism ; Cytosine/analogs & derivatives ; DNA (Cytosine-5-)-Methyltransferases/deficiency ; DNA Methylation ; DNA, Bacterial/genetics ; Gene Expression Regulation, Bacterial ; Leptospira interrogans/metabolism ; Leptospira interrogans/pathogenicity ; Leptospirosis/microbiology ; Leptospirosis/mortality ; Leptospirosis/pathology ; Mesocricetus ; Promoter Regions, Genetic ; Sigma Factor/genetics ; Sigma Factor/metabolism ; Survival Analysis ; Transcription, Genetic ; Virulence
Czasopismo naukowe
Tytuł :
Cooperative effects on the compaction of DNA fragments by the nucleoid protein H-NS and the crowding agent PEG probed by Magnetic Tweezers.
Autorzy :
Cristofalo M; School of Medicine and Surgery, Nanomedicine Center NANOMIB, University of Milano-Bicocca, via Raoul Follereau 3, 20854, Vedano al Lambro (MB), Italy.
Marrano CA; School of Medicine and Surgery, Nanomedicine Center NANOMIB, University of Milano-Bicocca, via Raoul Follereau 3, 20854, Vedano al Lambro (MB), Italy.
Salerno D; School of Medicine and Surgery, Nanomedicine Center NANOMIB, University of Milano-Bicocca, via Raoul Follereau 3, 20854, Vedano al Lambro (MB), Italy.
Corti R; School of Medicine and Surgery, Nanomedicine Center NANOMIB, University of Milano-Bicocca, via Raoul Follereau 3, 20854, Vedano al Lambro (MB), Italy.
Cassina V; School of Medicine and Surgery, Nanomedicine Center NANOMIB, University of Milano-Bicocca, via Raoul Follereau 3, 20854, Vedano al Lambro (MB), Italy.
Mammola A; Università degli Studi di Milano, Via Celoria 16, 20133 Milano (MI), Italy.
Gherardi M; Università degli Studi di Milano, Via Celoria 16, 20133 Milano (MI), Italy; IFOM, FIRC Institute of Molecular Oncology, Via Adamello 16, 20139 Milano (MI), Italy; I.N.F.N. Sezione di Milano, Via Celoria 16, 20133 Milano (MI), Italy.
Sclavi B; Université Pierre et Marie Curie, Institut de Biologie Paris Seine, 7-9 Quai Saint Bernard, 75005 Paris, France.
Cosentino Lagomarsino M; Università degli Studi di Milano, Via Celoria 16, 20133 Milano (MI), Italy; IFOM, FIRC Institute of Molecular Oncology, Via Adamello 16, 20139 Milano (MI), Italy; I.N.F.N. Sezione di Milano, Via Celoria 16, 20133 Milano (MI), Italy.
Mantegazza F; School of Medicine and Surgery, Nanomedicine Center NANOMIB, University of Milano-Bicocca, via Raoul Follereau 3, 20854, Vedano al Lambro (MB), Italy. Electronic address: .
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Źródło :
Biochimica et biophysica acta. General subjects [Biochim Biophys Acta Gen Subj] 2020 Dec; Vol. 1864 (12), pp. 129725. Date of Electronic Publication: 2020 Sep 03.
Typ publikacji :
Journal Article
MeSH Terms :
DNA, Bacterial/*metabolism
Escherichia coli/*metabolism
Escherichia coli Proteins/*metabolism
Fimbriae Proteins/*metabolism
Polyethylene Glycols/*metabolism
DNA, Bacterial/chemistry ; Escherichia coli/chemistry ; Magnetic Phenomena ; Nucleic Acid Conformation
Czasopismo naukowe
Tytuł :
Development of a sensitive molecular diagnostic assay for detecting Borrelia burgdorferi DNA from the blood of Lyme disease patients by digital PCR.
Autorzy :
Das S; Department of Pathology Research, Nuvance Health, Danbury, CT, United States of America.; Rudy L. Ruggles Biomedical Research Institute, Nuvance Health, Danbury, CT, United States of America.
Hammond-McKibben D; Department of Pathology Research, Nuvance Health, Danbury, CT, United States of America.; Rudy L. Ruggles Biomedical Research Institute, Nuvance Health, Danbury, CT, United States of America.
Guralski D; Department of Pathology Research, Nuvance Health, Danbury, CT, United States of America.; Rudy L. Ruggles Biomedical Research Institute, Nuvance Health, Danbury, CT, United States of America.
Lobo S; Rudy L. Ruggles Biomedical Research Institute, Nuvance Health, Danbury, CT, United States of America.
Fiedler PN; Department of Pathology Research, Nuvance Health, Danbury, CT, United States of America.; Rudy L. Ruggles Biomedical Research Institute, Nuvance Health, Danbury, CT, United States of America.
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Źródło :
PloS one [PLoS One] 2020 Nov 30; Vol. 15 (11), pp. e0235372. Date of Electronic Publication: 2020 Nov 30 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Borrelia burgdorferi/*genetics
DNA, Bacterial/*blood
Lyme Disease/*diagnosis
Molecular Diagnostic Techniques/*methods
Polymerase Chain Reaction/*methods
Serologic Tests/*methods
Borrelia burgdorferi/isolation & purification ; DNA, Bacterial/genetics ; Humans ; Lyme Disease/blood ; Lyme Disease/epidemiology
Czasopismo naukowe
Tytuł :
Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly.
Autorzy :
Gu CH; Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
Zhao C; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Hofstaedter C; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Tebas P; Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
Glaser L; Department of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
Baldassano R; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Bittinger K; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Mattei LM; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Bushman FD; Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
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Źródło :
PloS one [PLoS One] 2020 Nov 09; Vol. 15 (11), pp. e0236533. Date of Electronic Publication: 2020 Nov 09 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Cross Infection/*diagnosis
DNA, Bacterial/*analysis
Mycobacterium Infections/*diagnosis
Mycobacterium chelonae/*isolation & purification
Sequence Analysis, DNA/*methods
Whole Genome Sequencing/*methods
Cross Infection/epidemiology ; Cross Infection/microbiology ; DNA, Bacterial/genetics ; High-Throughput Nucleotide Sequencing ; Humans ; Mycobacterium Infections/epidemiology ; Mycobacterium Infections/microbiology ; Mycobacterium chelonae/classification ; Mycobacterium chelonae/genetics ; Philadelphia/epidemiology ; Phylogeny
Czasopismo naukowe
Tytuł :
Detection of Bacillus anthracis and Bacillus anthracis-like spores in soil from state of Rio de Janeiro, Brazil.
Autorzy :
Salgado JR; Exército Brasileiro, Instituto de Defesa Química, Biológica, Radiológica e Nuclear, Laboratório de Defesa Biológica, Rio de Janeiro, RJ, Brasil.
Rabinovitch L; Fundação Oswaldo Cruz-Fiocruz, Instituto Oswaldo Cruz, Laboratório de Fisiologia Bacteriana/Laboratório de Referência Nacional para Carbúnculo, Rio de Janeiro, RJ, Brasil.
Gomes MFDS; Exército Brasileiro, Instituto de Defesa Química, Biológica, Radiológica e Nuclear, Laboratório de Defesa Biológica, Rio de Janeiro, RJ, Brasil.
Allil RCDS; Universidade Federal do Rio de Janeiro, Instituto Alberto Luiz Coimbra de Pós-Graduação e Pesquisa de Engenharia, Laboratório de Instrumentação e Fotônica, Rio de Janeiro, RJ, Brasil.
Werneck MM; Universidade Federal do Rio de Janeiro, Instituto Alberto Luiz Coimbra de Pós-Graduação e Pesquisa de Engenharia, Laboratório de Instrumentação e Fotônica, Rio de Janeiro, RJ, Brasil.
Rodrigues RB; Exército Brasileiro, Instituto de Defesa Química, Biológica, Radiológica e Nuclear, Laboratório de Defesa Biológica, Rio de Janeiro, RJ, Brasil.
Picão RC; Universidade Federal do Rio de Janeiro, Instituto de Microbiologia Paulo de Góes, Rio de Janeiro, RJ, Brasil.
Oliveira Luiz FB; Fundação Oswaldo Cruz-Fiocruz, Instituto Oswaldo Cruz, Laboratório de Fisiologia Bacteriana/Laboratório de Referência Nacional para Carbúnculo, Rio de Janeiro, RJ, Brasil.
Vivoni AM; Fundação Oswaldo Cruz-Fiocruz, Instituto Oswaldo Cruz, Laboratório de Fisiologia Bacteriana/Laboratório de Referência Nacional para Carbúnculo, Rio de Janeiro, RJ, Brasil.
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Źródło :
Memorias do Instituto Oswaldo Cruz [Mem Inst Oswaldo Cruz] 2020 Nov 06; Vol. 115, pp. e200370. Date of Electronic Publication: 2020 Nov 06 (Print Publication: 2020).
Typ publikacji :
Journal Article
MeSH Terms :
Soil Microbiology*
Spores, Bacterial*
Bacillus anthracis/*isolation & purification
DNA, Bacterial/*genetics
Plasmids/*analysis
Polymerase Chain Reaction/*methods
Virulence Factors/*genetics
Antigens, Bacterial ; Bacillus anthracis/genetics ; Bacillus anthracis/pathogenicity ; Bacterial Toxins ; Brazil ; DNA, Bacterial/analysis ; Humans ; Plasmids/genetics ; Sequence Analysis, DNA ; Soil ; Virulence
Czasopismo naukowe
Tytuł :
Five millennia of Bartonella quintana bacteraemia.
Autorzy :
Mai BH; Aix-Marseille Université UM63, Institut de Recherche pour le Développement IRD 198, Assistance Publique-Hôpitaux de Marseille (AP-HM), Microbes, Evolution, Phylogeny and Infection (MEPHI), Institut Hospitalo-Universitaire (IHU)-Méditerranée Infection, Marseille, France.; Hue University of Medicine and Pharmacy, Hue, Vietnam.
Barbieri R; Aix-Marseille Université UM63, Institut de Recherche pour le Développement IRD 198, Assistance Publique-Hôpitaux de Marseille (AP-HM), Microbes, Evolution, Phylogeny and Infection (MEPHI), Institut Hospitalo-Universitaire (IHU)-Méditerranée Infection, Marseille, France.
Chenal T; CNRS, UMR 6298 ArTeHiS, France.
Castex D; UMR 5199 du CNRS, PACEA, Anthropologie des Populations Passées et Présentes, Université de Bordeaux, Pessac, France.
Jonvel R; Amiens Métropole Service Archéologie Préventive, France.
Tanasi D; Department of History, University of South Florida, Tampa, Florida, United States of America.
Georges-Zimmermann P; INRAP, UMR 5608 CNRS, TRACES, France.
Dutour O; Ecole Pratique des Hautes Etudes, Université Paris Sciences Lettres-UMR 5199 CNRS, PACEA, Université de Bordeaux, Pessac, France.
Peressinotto D; UMR 5199 du CNRS, PACEA, Anthropologie des Populations Passées et Présentes, Université de Bordeaux, Pessac, France.; HADES- Bureau d'investigation archéologiques, Bordeaux, France.
Demangeot C; UMR 5199 du CNRS, PACEA, Anthropologie des Populations Passées et Présentes, Université de Bordeaux, Pessac, France.; HADES- Bureau d'investigation archéologiques, Bordeaux, France.
Drancourt M; Aix-Marseille Université UM63, Institut de Recherche pour le Développement IRD 198, Assistance Publique-Hôpitaux de Marseille (AP-HM), Microbes, Evolution, Phylogeny and Infection (MEPHI), Institut Hospitalo-Universitaire (IHU)-Méditerranée Infection, Marseille, France.
Aboudharam G; Aix-Marseille Université UM63, Institut de Recherche pour le Développement IRD 198, Assistance Publique-Hôpitaux de Marseille (AP-HM), Microbes, Evolution, Phylogeny and Infection (MEPHI), Institut Hospitalo-Universitaire (IHU)-Méditerranée Infection, Marseille, France.; UFR Odontologie, Aix-Marseille Université, Marseille, France.
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Źródło :
PloS one [PLoS One] 2020 Nov 04; Vol. 15 (11), pp. e0239526. Date of Electronic Publication: 2020 Nov 04 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Bacteremia/*diagnosis
Bartonella quintana/*genetics
DNA, Bacterial/*genetics
Tooth/*microbiology
Trench Fever/*diagnosis
Bacteremia/microbiology ; Bartonella quintana/physiology ; DNA, Bacterial/isolation & purification ; Dental Pulp/microbiology ; Europe/epidemiology ; Fossils/microbiology ; Humans ; Military Personnel ; Paleodontology/methods ; Prevalence ; Real-Time Polymerase Chain Reaction ; Sequence Analysis, DNA ; Trench Fever/epidemiology ; Trench Fever/microbiology
Czasopismo naukowe
Tytuł :
Ultrasensitive Electrochemical Impedance Detection of Mycoplasma agalactiae DNA by Low-Cost and Disposable Au-Decorated NiO Nanowall Electrodes.
Autorzy :
Urso M; Dipartimento di Fisica e Astronomia 'Ettore Majorana', Università di Catania, and IMM-CNR, via S. Sofia 64, 95123 Catania, Italy.
Tumino S; Dipartimento di Agricoltura, Alimentazione e Ambiente, Università di Catania, via Valdisavoia 5, 95123 Catania, Italy.; OIE Reference Laboratory for Contagious Agalactia-Istituto Zooprofilattico Sperimentale della Sicilia, via Gino Marinuzzi 3, 90129 Palermo, Italy.
Bruno E; Dipartimento di Fisica e Astronomia 'Ettore Majorana', Università di Catania, and IMM-CNR, via S. Sofia 64, 95123 Catania, Italy.
Bordonaro S; Dipartimento di Agricoltura, Alimentazione e Ambiente, Università di Catania, via Valdisavoia 5, 95123 Catania, Italy.
Marletta D; Dipartimento di Agricoltura, Alimentazione e Ambiente, Università di Catania, via Valdisavoia 5, 95123 Catania, Italy.
Loria GR; OIE Reference Laboratory for Contagious Agalactia-Istituto Zooprofilattico Sperimentale della Sicilia, via Gino Marinuzzi 3, 90129 Palermo, Italy.
Avni A; School of Plant Sciences and Food Security, Tel Aviv University, Tel-Aviv 69978, Israel.
Shacham-Diamand Y; Department of Physical Electronics, School of Electrical Engineering and Department of Materials Science and Engineering, Faculty of Engineering, Tel Aviv University, Tel-Aviv 69978, Israel.; TAU/TiET Food Security Centre of Excellence (T2FSCOE), Thapar Institute of Engineering and Technology, Patiala 147004, Punjab, India.
Priolo F; Dipartimento di Fisica e Astronomia 'Ettore Majorana', Università di Catania, and IMM-CNR, via S. Sofia 64, 95123 Catania, Italy.
Mirabella S; Dipartimento di Fisica e Astronomia 'Ettore Majorana', Università di Catania, and IMM-CNR, via S. Sofia 64, 95123 Catania, Italy.
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Źródło :
ACS applied materials & interfaces [ACS Appl Mater Interfaces] 2020 Nov 04; Vol. 12 (44), pp. 50143-50151. Date of Electronic Publication: 2020 Oct 20.
Typ publikacji :
Journal Article
MeSH Terms :
Biosensing Techniques*
Electrochemical Techniques*
DNA Probes/*chemistry
DNA, Bacterial/*analysis
Mycoplasma agalactiae/*chemistry
Nanoparticles/*chemistry
DNA, Bacterial/chemical synthesis ; Electrodes ; Gold/chemistry ; Nickel/chemistry ; Particle Size ; Surface Properties
Czasopismo naukowe
Tytuł :
Predicting the mutagenic potential of chemicals in tobacco products using in silico toxicology tools.
Autorzy :
Goel R; United States Food and Drug Administration, Division of Nonclinical Science, Office of Science, Center for Tobacco Products, Calverton, MD, USA.
Valerio LG Jr; United States Food and Drug Administration, Division of Nonclinical Science, Office of Science, Center for Tobacco Products, Calverton, MD, USA.
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Źródło :
Toxicology mechanisms and methods [Toxicol Mech Methods] 2020 Nov; Vol. 30 (9), pp. 672-678. Date of Electronic Publication: 2020 Aug 26.
Typ publikacji :
Comparative Study; Journal Article; Validation Study
MeSH Terms :
Computer Simulation*
Models, Molecular*
Mutagenesis*
Mutagenicity Tests*
DNA, Bacterial/*drug effects
Smoke/*adverse effects
Tobacco Products/*toxicity
DNA, Bacterial/genetics ; Databases, Chemical ; High-Throughput Screening Assays ; Humans ; Molecular Structure ; Quantitative Structure-Activity Relationship ; Reproducibility of Results ; Risk Assessment
Czasopismo naukowe

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