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Tytuł :
Dual recognition element-controlled logic DNA circuit for COVID-19 detection based on exonuclease III and DNAzyme.
Autorzy :
Pan J; College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China. .
He Y; College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China. .
Liu Z; College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China. .
Chen J; National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China. .
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Źródło :
Chemical communications (Cambridge, England) [Chem Commun (Camb)] 2021 Feb 02; Vol. 57 (9), pp. 1125-1128.
Typ publikacji :
Journal Article
MeSH Terms :
COVID-19 Testing*
COVID-19/*diagnosis
DNA, Viral/*analysis
SARS-CoV-2/*genetics
Saliva/*virology
DNA, Catalytic ; DNA, Viral/blood ; DNA, Viral/urine ; Exodeoxyribonucleases ; Genome, Viral ; Humans ; Logic
Czasopismo naukowe
Tytuł :
Stretching DNA origami: effect of nicks and Holliday junctions on the axial stiffness.
Autorzy :
Jung WH; Department of Mechanical Engineering, Johns Hopkins University, USA.; Institute for NanoBioTechnology, Johns Hopkins University, USA.; Center for Cell Dynamics, Johns Hopkins University, USA.
Chen E; Department of Civil and Systems Engineering, Johns Hopkins University, USA.
Veneziano R; Department of Bioengineering, George Mason University, USA.; Institute for Advanced Biomedical Research, George Mason University, USA.
Gaitanaros S; Department of Civil and Systems Engineering, Johns Hopkins University, USA.
Chen Y; Department of Mechanical Engineering, Johns Hopkins University, USA.; Institute for NanoBioTechnology, Johns Hopkins University, USA.; Center for Cell Dynamics, Johns Hopkins University, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Dec 02; Vol. 48 (21), pp. 12407-12414.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA, Cruciform/*chemistry
DNA, Single-Stranded/*chemistry
DNA, Viral/*chemistry
Nanostructures/*chemistry
Bacteriophage M13/chemistry ; Bacteriophage M13/genetics ; Biomechanical Phenomena ; DNA, Cruciform/genetics ; DNA, Cruciform/metabolism ; DNA, Single-Stranded/genetics ; DNA, Single-Stranded/metabolism ; DNA, Viral/genetics ; DNA, Viral/metabolism ; Elasticity ; Polynucleotide 5'-Hydroxyl-Kinase/chemistry ; Thermodynamics
Czasopismo naukowe
Tytuł :
HIV-1 diversity considerations in the application of the Intact Proviral DNA Assay (IPDA).
Autorzy :
Kinloch NN; Faculty of Health Sciences, Simon Fraser University, Burnaby, BC, Canada.; British Columbia Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada.
Ren Y; Infectious Diseases Division, Department of Medicine, Weill Cornell Medical College, New York, NY, USA.
Conce Alberto WD; Infectious Diseases Division, Department of Medicine, Weill Cornell Medical College, New York, NY, USA.
Dong W; British Columbia Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada.
Khadka P; Infectious Diseases Division, Department of Medicine, Weill Cornell Medical College, New York, NY, USA.
Huang SH; Infectious Diseases Division, Department of Medicine, Weill Cornell Medical College, New York, NY, USA.
Mota TM; Infectious Diseases Division, Department of Medicine, Weill Cornell Medical College, New York, NY, USA.
Wilson A; Department of Microbiology, Immunology and Tropical Medicine, George Washington University, Washington, DC, USA.
Shahid A; Faculty of Health Sciences, Simon Fraser University, Burnaby, BC, Canada.; British Columbia Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada.
Kirkby D; British Columbia Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada.
Harris M; British Columbia Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada.; Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada.
Kovacs C; Maple Leaf Medical Clinic, Toronto, ON, Canada.
Benko E; Maple Leaf Medical Clinic, Toronto, ON, Canada.
Ostrowski MA; Department of Medicine, University of Toronto, Toronto, ON, Canada.
Del Rio Estrada PM; Center for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Mexico.
Wimpelberg A; Whitman Walker Health, Washington, DC, USA.
Cannon C; Whitman Walker Health, Washington, DC, USA.
Hardy WD; Whitman Walker Health, Washington, DC, USA.
MacLaren L; Whitman Walker Health, Washington, DC, USA.
Goldstein H; Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, USA.
Brumme CJ; British Columbia Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada.; Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada.
Lee GQ; Infectious Diseases Division, Department of Medicine, Weill Cornell Medical College, New York, NY, USA.
Lynch RM; Department of Microbiology, Immunology and Tropical Medicine, George Washington University, Washington, DC, USA.
Brumme ZL; Faculty of Health Sciences, Simon Fraser University, Burnaby, BC, Canada. .; British Columbia Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada. .
Jones RB; Infectious Diseases Division, Department of Medicine, Weill Cornell Medical College, New York, NY, USA. .; Department of Microbiology, Immunology and Tropical Medicine, George Washington University, Washington, DC, USA. .
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Źródło :
Nature communications [Nat Commun] 2021 Jan 08; Vol. 12 (1), pp. 165. Date of Electronic Publication: 2021 Jan 08.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Biodiversity*
DNA, Viral/*analysis
HIV-1/*genetics
Proviruses/*genetics
Base Sequence ; CD4-Positive T-Lymphocytes/virology ; DNA, Viral/genetics ; HIV Infections/virology ; Humans ; Phylogeny ; Polymerase Chain Reaction/methods
Czasopismo naukowe
Tytuł :
Biochemical and Biophysical Characterization of the dsDNA Packaging Motor from the Lactococcus lactis Bacteriophage Asccphi28.
Autorzy :
Reyes-Aldrete E; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
Dill EA; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
Bussetta C; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
Szymanski MR; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
Diemer G; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
Maindola P; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
White MA; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.; Sealy Center for Structural Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
Bujalowski WM; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.; Sealy Center for Structural Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
Choi KH; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.; Sealy Center for Structural Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
Morais MC; Department of Biochemistry and Molecular Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.; Sealy Center for Structural Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
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Źródło :
Viruses [Viruses] 2020 Dec 23; Vol. 13 (1). Date of Electronic Publication: 2020 Dec 23.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Chemical Phenomena*
DNA Packaging*
DNA, Viral*
Bacteriophages/*isolation & purification
Bacteriophages/*physiology
Lactococcus lactis/*virology
Adenosine Triphosphatases ; Bacteriophages/ultrastructure ; Cloning, Molecular ; Gene Expression ; Models, Molecular ; Recombinant Proteins ; Spectrum Analysis ; Structure-Activity Relationship ; Struvite ; Viral Proteins/chemistry ; Viral Proteins/genetics ; Viral Proteins/metabolism ; Virion/ultrastructure ; Virus Assembly
Czasopismo naukowe
Tytuł :
Whole blood as an alternative to peripheral blood mononuclear cell for detection of total HIV-1 DNA.
Autorzy :
Lin L; Department of Infectious Diseases, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, 1# Shuai Fu Yuan, Beijing, 100730, China.
Yue YS; Department of Infectious Diseases, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, 1# Shuai Fu Yuan, Beijing, 100730, China.
Wang ND; Department of Infectious Diseases, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, 1# Shuai Fu Yuan, Beijing, 100730, China.
Wei LY; Department of Infectious Diseases, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, 1# Shuai Fu Yuan, Beijing, 100730, China.
Han Y; Department of Infectious Diseases, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, 1# Shuai Fu Yuan, Beijing, 100730, China.
Song XJ; Department of Infectious Diseases, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, 1# Shuai Fu Yuan, Beijing, 100730, China.
Qiu ZF; Department of Infectious Diseases, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, 1# Shuai Fu Yuan, Beijing, 100730, China.
Cao W; Department of Infectious Diseases, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, 1# Shuai Fu Yuan, Beijing, 100730, China.
Li TS; Department of Infectious Diseases, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, 1# Shuai Fu Yuan, Beijing, 100730, China. .; Center for AIDS Research, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China. .; Clinical Immunology Center, Chinese Academy of Medical Sciences, Beijing, China. .; Tsinghua-Peking Center for Life Sciences, School of Medicine, Tsinghua University, Beijing, China. .
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Źródło :
BMC infectious diseases [BMC Infect Dis] 2020 Dec 10; Vol. 20 (1), pp. 941. Date of Electronic Publication: 2020 Dec 10.
Typ publikacji :
Journal Article
MeSH Terms :
DNA, Viral/*blood
HIV Infections/*blood
HIV Infections/*diagnosis
HIV-1/*genetics
Leukocytes, Mononuclear/*virology
Adult ; Anti-HIV Agents/therapeutic use ; CD4-CD8 Ratio ; DNA, Viral/analysis ; Female ; Follow-Up Studies ; HIV Infections/drug therapy ; HIV Infections/virology ; Humans ; Male ; Real-Time Polymerase Chain Reaction ; Retrospective Studies ; Viral Load/drug effects
Czasopismo naukowe
Tytuł :
Determining a sampling regime for PCR detection of respiratory tract viral infection at coronial post-mortem examinations.
Autorzy :
Gilsenan-Reed C; School of Medical and Health Sciences, University of Adelaide, Adelaide, South Australia, Australia.
Higgins G; Microbiology and Infectious Diseases Directorate, SA Pathology, North Terrace, Adelaide, South Australia, Australia.
Langlois N; School of Medical and Health Sciences, University of Adelaide, Adelaide, South Australia, Australia. .; Consultant Forensic Pathologist, Forensic Science SA, GPO Box 2790, Adelaide, South Australia, 5001, Australia. .
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Źródło :
Forensic science, medicine, and pathology [Forensic Sci Med Pathol] 2020 Sep; Vol. 16 (3), pp. 457-462. Date of Electronic Publication: 2020 Jun 23.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
Multiplex Polymerase Chain Reaction*
Specimen Handling*
Virology*
DNA, Viral/*isolation & purification
Lung/*virology
Nasopharynx/*virology
Respiratory Tract Infections/*diagnosis
Virus Diseases/*diagnosis
Viruses/*isolation & purification
Adult ; Aged ; Aged, 80 and over ; Autopsy ; Cause of Death ; DNA, Viral/classification ; DNA, Viral/genetics ; Female ; Humans ; Infant ; Male ; Middle Aged ; Predictive Value of Tests ; Reproducibility of Results ; Respiratory Tract Infections/virology ; Retrospective Studies ; Virus Diseases/virology ; Viruses/classification ; Viruses/genetics
Czasopismo naukowe
Tytuł :
CRISPR based editing of SIV proviral DNA in ART treated non-human primates.
Autorzy :
Mancuso P; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Chen C; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Kaminski R; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Gordon J; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Liao S; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Robinson JA; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Smith MD; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Liu H; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Sariyer IK; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Sariyer R; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Peterson TA; Division of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, 70433, USA.
Donadoni M; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA.
Williams JB; Division of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, 70433, USA.
Siddiqui S; Division of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, 70433, USA.
Bunnell BA; Division of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, 70433, USA.; Tulane Brain Institute, Tulane University, New Orleans, LA, 70118, USA.; Department of Pharmacology, Tulane University School of Medicine, New Orleans, LA, 70112, USA.; Department of Microbiology, Immunology and Genetics, University of North Texas Health Science Center, Fort Worth, TX, 76107, USA.
Ling B; Division of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, 70433, USA. .; Department of Microbiology & Immunology, Tulane University School of Medicine, New Orleans, LA, 70112, USA. .; Texas Biomedical Research Institute, San Antonio, TX, 78227, USA. .
MacLean AG; Division of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, 70433, USA. .; Tulane Brain Institute, Tulane University, New Orleans, LA, 70118, USA. .; Department of Microbiology & Immunology, Tulane University School of Medicine, New Orleans, LA, 70112, USA. .
Burdo TH; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA. .
Khalili K; Department of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, 3500N. Broad Street, 7th Floor, Philadelphia, PA, 19140, USA. .
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Źródło :
Nature communications [Nat Commun] 2020 Nov 27; Vol. 11 (1), pp. 6065. Date of Electronic Publication: 2020 Nov 27.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Gene Editing*
Anti-Retroviral Agents/*pharmacology
CRISPR-Cas Systems/*genetics
DNA, Viral/*genetics
Proviruses/*genetics
Simian Immunodeficiency Virus/*genetics
Animals ; Base Sequence ; Cells, Cultured ; DNA, Viral/blood ; Genome, Viral ; Humans ; Lung/drug effects ; Lung/virology ; Lymph Nodes/drug effects ; Lymph Nodes/virology ; Macaca mulatta ; Proviruses/drug effects ; Simian Acquired Immunodeficiency Syndrome/blood ; Simian Acquired Immunodeficiency Syndrome/virology ; Spleen/pathology ; Spleen/virology ; Tissue Distribution ; Transgenes
Czasopismo naukowe
Tytuł :
Function of a viral genome packaging motor from bacteriophage T4 is insensitive to DNA sequence.
Autorzy :
Mo Y; Department of Physics, University of California, San Diego, La Jolla, CA 92093, USA.
Keller N; Department of Physics, University of California, San Diego, La Jolla, CA 92093, USA.
delToro D; Department of Physics, University of California, San Diego, La Jolla, CA 92093, USA.
Ananthaswamy N; Department of Biology, The Catholic University of America, District of Columbia, 20064, USA.
Harvey SC; Department of Biochemistry and Biophysics, Univ. of Pennsylvania, Philadelphia, PA 19104, USA.
Rao VB; Department of Biology, The Catholic University of America, District of Columbia, 20064, USA.
Smith DE; Department of Physics, University of California, San Diego, La Jolla, CA 92093, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Nov 18; Vol. 48 (20), pp. 11602-11614.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Viral Genome Packaging*
Bacteriophage T4/*genetics
Bacteriophage T4/*physiology
DNA, Viral/*chemistry
Base Sequence ; DNA, Viral/metabolism ; Genome, Viral ; Optical Tweezers
Czasopismo naukowe
Tytuł :
Impact of respiratory viral panel testing on length of stay in pediatric cancer patients admitted with fever and neutropenia.
Autorzy :
Shinn K; Emory University School of Medicine, Atlanta, Georgia.
Wetzel M; Biostatistics Core, Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia.
DeGroote NP; Aflac Cancer and Blood Disorders Center, Children's Healthcare of Atlanta, Atlanta, Georgia.
Keller F; Aflac Cancer and Blood Disorders Center, Children's Healthcare of Atlanta, Atlanta, Georgia.; Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia.
Briones M; Aflac Cancer and Blood Disorders Center, Children's Healthcare of Atlanta, Atlanta, Georgia.; Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia.
Felker J; Division of Hematology/Oncology, Children's Hospital of Pittsburgh, Pittsburgh, Pennsylvania.
Castellino S; Aflac Cancer and Blood Disorders Center, Children's Healthcare of Atlanta, Atlanta, Georgia.; Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia.
Miller TP; Aflac Cancer and Blood Disorders Center, Children's Healthcare of Atlanta, Atlanta, Georgia.; Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia.
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Źródło :
Pediatric blood & cancer [Pediatr Blood Cancer] 2020 Nov; Vol. 67 (11), pp. e28570. Date of Electronic Publication: 2020 Sep 02.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
DNA, Viral/*analysis
Fever/*virology
Neoplasms/*complications
Neutropenia/*virology
Respiratory Tract Infections/*virology
Virus Diseases/*diagnosis
Viruses/*isolation & purification
Adolescent ; Adult ; Child ; Child, Preschool ; DNA, Viral/genetics ; Female ; Fever/epidemiology ; Follow-Up Studies ; Georgia/epidemiology ; Hospitalization ; Humans ; Infant ; Infant, Newborn ; Length of Stay ; Male ; Neutropenia/epidemiology ; Polymerase Chain Reaction ; Prognosis ; Respiratory Tract Infections/epidemiology ; Retrospective Studies ; Virus Diseases/epidemiology ; Virus Diseases/virology ; Viruses/genetics ; Young Adult
Czasopismo naukowe
Tytuł :
Single-cell Multiplexed Fluorescence Imaging to Visualize Viral Nucleic Acids and Proteins and Monitor HIV, HTLV, HBV, HCV, Zika Virus, and Influenza Infection.
Autorzy :
Shah R; Laboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine.
Lan S; Laboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine.
Puray-Chavez MN; Department of Molecular Microbiology & Immunology, University of Missouri School of Medicine.
Liu D; Department of Molecular Microbiology & Immunology, University of Missouri School of Medicine.
Tedbury PR; Laboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine.
Sarafianos SG; Laboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine; .
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Źródło :
Journal of visualized experiments : JoVE [J Vis Exp] 2020 Oct 29 (164). Date of Electronic Publication: 2020 Oct 29.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Video-Audio Media
MeSH Terms :
Optical Imaging*
Single-Cell Analysis*
DNA, Viral/*analysis
RNA, Viral/*analysis
Viral Proteins/*analysis
Virus Diseases/*diagnosis
Virus Diseases/*genetics
DNA, Viral/genetics ; HIV-1/genetics ; Hepacivirus/genetics ; Hepatitis B virus/genetics ; Humans ; In Situ Hybridization, Fluorescence ; Orthomyxoviridae/genetics ; RNA, Viral/genetics ; Zika Virus/genetics
Czasopismo naukowe
Tytuł :
The origin and evolution of viruses inferred from fold family structure.
Autorzy :
Mughal F; Evolutionary Bioinformatics Laboratory, Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA.; Illinois Informatics Institute, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Nasir A; Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, USA.; Department of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan.
Caetano-Anollés G; Evolutionary Bioinformatics Laboratory, Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA. .; Illinois Informatics Institute, University of Illinois at Urbana-Champaign, Urbana, IL, USA. .
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Źródło :
Archives of virology [Arch Virol] 2020 Oct; Vol. 165 (10), pp. 2177-2191. Date of Electronic Publication: 2020 Aug 03.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Biological Evolution*
Genome, Viral*
Phylogeny*
DNA, Viral/*genetics
Giant Viruses/*genetics
Viral Proteins/*genetics
Archaea/genetics ; Archaea/virology ; Bacteria/genetics ; Bacteria/virology ; DNA, Viral/chemistry ; Eukaryota/genetics ; Eukaryota/virology ; Genome Size ; Giant Viruses/classification ; Proteogenomics/methods ; Proteome/genetics ; Viral Proteins/chemistry
Czasopismo naukowe
Tytuł :
The C4 protein encoded by tomato leaf curl Yunnan virus reverses transcriptional gene silencing by interacting with NbDRM2 and impairing its DNA-binding ability.
Autorzy :
Mei Y; State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, Zhejiang, China.
Wang Y; State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, Zhejiang, China.
Li F; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China.
Zhou X; State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, Zhejiang, China.; State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China.
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Źródło :
PLoS pathogens [PLoS Pathog] 2020 Oct 01; Vol. 16 (10), pp. e1008829. Date of Electronic Publication: 2020 Oct 01 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Silencing*
Begomovirus/*physiology
DNA, Viral/*metabolism
Plant Diseases/*virology
Plant Proteins/*metabolism
Tobacco/*virology
Viral Proteins/*metabolism
DNA Methylation ; DNA, Viral/genetics ; Genome, Viral ; Host-Pathogen Interactions/genetics ; Plant Diseases/immunology ; Plant Proteins/genetics ; Plants, Genetically Modified/genetics ; Plants, Genetically Modified/metabolism ; Plants, Genetically Modified/virology ; Tobacco/genetics ; Tobacco/metabolism ; Transcription, Genetic ; Viral Proteins/genetics
SCR Organism :
Tomato leaf curl virus
Czasopismo naukowe
Tytuł :
Room-temperature-storable PCR mixes for SARS-CoV-2 detection.
Autorzy :
Xu J; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
Wang J; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
Zhong Z; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
Su X; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
Yang K; Xiamen International Travel Healthcare Center, Xiamen 361013, China.
Chen Z; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
Zhang D; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
Li T; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
Wang Y; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
Zhang S; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China. Electronic address: .
Ge S; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China. Electronic address: .
Zhang J; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
Xia N; State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Public Health, Xiamen University, Xiamen 361102, China.
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Źródło :
Clinical biochemistry [Clin Biochem] 2020 Oct; Vol. 84, pp. 73-78. Date of Electronic Publication: 2020 Jun 24.
Typ publikacji :
Journal Article
MeSH Terms :
Betacoronavirus/*genetics
Clinical Laboratory Techniques/*methods
Coronavirus Infections/*diagnosis
DNA Primers/*chemistry
DNA, Viral/*analysis
Pneumonia, Viral/*diagnosis
Polymerase Chain Reaction/*methods
Betacoronavirus/isolation & purification ; COVID-19 ; COVID-19 Testing ; Coronavirus Infections/virology ; DNA, Viral/genetics ; Freeze Drying ; Humans ; Pandemics ; Pneumonia, Viral/virology ; SARS-CoV-2 ; Temperature
Czasopismo naukowe
Tytuł :
Pyk2 Regulates Human Papillomavirus Replication by Tyrosine Phosphorylation of the E2 Protein.
Autorzy :
Jose L; Department of Dermatology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
DeSmet M; Department of Dermatology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Androphy EJ; Department of Dermatology, Indiana University School of Medicine, Indianapolis, Indiana, USA .; Department of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, Indiana, USA.
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Źródło :
Journal of virology [J Virol] 2020 Sep 29; Vol. 94 (20). Date of Electronic Publication: 2020 Sep 29 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Replication*
Virus Replication*
Alphapapillomavirus/*physiology
DNA, Viral/*biosynthesis
Focal Adhesion Kinase 2/*metabolism
Keratinocytes/*metabolism
Oncogene Proteins, Viral/*metabolism
Amino Acid Motifs ; Cell Cycle Proteins/genetics ; Cell Cycle Proteins/metabolism ; DNA, Viral/genetics ; Focal Adhesion Kinase 2/genetics ; HEK293 Cells ; HeLa Cells ; Humans ; Keratinocytes/virology ; Oncogene Proteins, Viral/genetics ; Protein Domains ; Transcription Factors/genetics ; Transcription Factors/metabolism
Czasopismo naukowe
Tytuł :
The Concerted Action of Two B3-Like Prophage Genes Excludes Superinfecting Bacteriophages by Blocking DNA Entry into Pseudomonas aeruginosa.
Autorzy :
Carballo-Ontiveros MA; Departamento de Genética y Biología Molecular, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Mexico City, Mexico.
Cazares A; EMBL's European Bioinformatics Institute and Wellcome Sanger Institute, Hinxton, Cambridgeshire, United Kingdom.
Vinuesa P; Programa de Ingeniería Genómica, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico.
Kameyama L; Departamento de Genética y Biología Molecular, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Mexico City, Mexico.
Guarneros G; Departamento de Genética y Biología Molecular, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Mexico City, Mexico .
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Źródło :
Journal of virology [J Virol] 2020 Jul 16; Vol. 94 (15). Date of Electronic Publication: 2020 Jul 16 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA, Viral*/genetics
DNA, Viral*/metabolism
Genes, Viral*
Open Reading Frames*
Prophages*/genetics
Prophages*/metabolism
Pseudomonas Phages*/genetics
Pseudomonas Phages*/metabolism
Pseudomonas aeruginosa*/genetics
Pseudomonas aeruginosa*/metabolism
Pseudomonas aeruginosa*/virology
Czasopismo naukowe
Tytuł :
Catalytically inactive T7 DNA polymerase imposes a lethal replication roadblock.
Autorzy :
Hernandez AJ; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA.
Lee SJ; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA.
Chang S; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA.
Lee JA; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA.
Loparo JJ; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA.
Richardson CC; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA .
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Źródło :
The Journal of biological chemistry [J Biol Chem] 2020 Jul 10; Vol. 295 (28), pp. 9542-9550. Date of Electronic Publication: 2020 May 19.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Bacteriophage T7*/enzymology
Bacteriophage T7*/genetics
DNA Replication*
DNA, Viral*/biosynthesis
DNA, Viral*/chemistry
DNA, Viral*/genetics
DNA-Directed DNA Polymerase*/chemistry
DNA-Directed DNA Polymerase*/genetics
DNA-Directed DNA Polymerase*/metabolism
Escherichia coli*/enzymology
Escherichia coli*/genetics
Escherichia coli*/virology
Escherichia coli Proteins*/chemistry
Escherichia coli Proteins*/genetics
Escherichia coli Proteins*/metabolism
Thioredoxins*/chemistry
Thioredoxins*/genetics
Thioredoxins*/metabolism
Protein Domains
Czasopismo naukowe
Tytuł :
Cressdnaviricota : a Virus Phylum Unifying Seven Families of Rep-Encoding Viruses with Single-Stranded, Circular DNA Genomes.
Autorzy :
Krupovic M; Archaeal Virology Unit, Institut Pasteur, Paris, France .
Varsani A; The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, Arizona, USA.; Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa.
Kazlauskas D; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
Breitbart M; University of South Florida, College of Marine Science, St. Petersburg, Florida, USA.
Delwart E; Vitalant Research Institute, San Francisco, California, USA.; UCSF Department of Laboratory Medicine, University of California-San Francisco, San Francisco, California, USA.
Rosario K; University of South Florida, College of Marine Science, St. Petersburg, Florida, USA.
Yutin N; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Wolf YI; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Harrach B; Institute for Veterinary Medical Research, Centre for Agricultural Research, Budapest, Hungary.
Zerbini FM; Departamento de Fitopatologia/Bioagro, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.
Dolja VV; Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA.
Kuhn JH; Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, Maryland, USA.
Koonin EV; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
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Źródło :
Journal of virology [J Virol] 2020 Jun 01; Vol. 94 (12). Date of Electronic Publication: 2020 Jun 01 (Print Publication: 2020).
Typ publikacji :
Letter; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
Phylogeny*
DNA Viruses/*genetics
DNA, Circular/*genetics
DNA, Single-Stranded/*genetics
DNA, Viral/*genetics
Animals ; DNA Viruses/classification ; DNA, Circular/chemistry ; DNA, Circular/metabolism ; DNA, Single-Stranded/chemistry ; DNA, Single-Stranded/metabolism ; DNA, Viral/chemistry ; DNA, Viral/metabolism ; Diatoms/virology ; Genome Size ; Insecta/virology ; Plants/virology ; Terminology as Topic ; Viral Proteins/genetics ; Viral Proteins/metabolism ; Virus Replication
Raport
Tytuł :
No G-Quadruplex Structures in the DNA of Parvovirus B19: Experimental Evidence versus Bioinformatic Predictions.
Autorzy :
Bua G; Department of Pharmacy and Biotechnology, University of Bologna, 40126 Bologna, Italy.
Tedesco D; Department of Pharmacy and Biotechnology, University of Bologna, 40126 Bologna, Italy.
Conti I; Department of Pharmacy and Biotechnology, University of Bologna, 40126 Bologna, Italy.
Reggiani A; Department of Pharmacy and Biotechnology, University of Bologna, 40126 Bologna, Italy.
Bartolini M; Department of Pharmacy and Biotechnology, University of Bologna, 40126 Bologna, Italy.
Gallinella G; Department of Pharmacy and Biotechnology, University of Bologna, 40126 Bologna, Italy.
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Źródło :
Viruses [Viruses] 2020 Aug 25; Vol. 12 (9). Date of Electronic Publication: 2020 Aug 25.
Typ publikacji :
Journal Article
MeSH Terms :
G-Quadruplexes*
DNA, Viral/*chemistry
Parvovirus B19, Human/*genetics
Acridines/pharmacology ; Aminoquinolines/pharmacology ; Antiviral Agents/pharmacology ; Cells, Cultured ; Circular Dichroism ; Computational Biology ; DNA, Viral/metabolism ; Erythroid Precursor Cells/virology ; Genome, Viral ; Humans ; Parvovirus B19, Human/drug effects ; Parvovirus B19, Human/physiology ; Picolinic Acids/pharmacology ; Virus Replication/drug effects
Czasopismo naukowe
Tytuł :
A Simple and Cost-Effective DNA Preparation Method Suitable for High-Throughput PCR Quantification of Hepatitis B Virus Genomes.
Autorzy :
Jo E; Applied Molecular Virology Laboratory, Institut Pasteur Korea, 696 Sampyeong-dong, Bundang-gu, Seongnam-si, Gyeonggi-do 13488, Korea.
Yang J; Applied Molecular Virology Laboratory, Institut Pasteur Korea, 696 Sampyeong-dong, Bundang-gu, Seongnam-si, Gyeonggi-do 13488, Korea.
Koenig A; Applied Molecular Virology Laboratory, Institut Pasteur Korea, 696 Sampyeong-dong, Bundang-gu, Seongnam-si, Gyeonggi-do 13488, Korea.
Yoon SK; Catholic University Liver Research Center, The Catholic University of Korea, Seoul 06591, Korea.; Division of Gastroenterology and Hepatology, Department of Internal Medicine, College of Medicine, Seoul St. Mary's Hospital, The Catholic University of Korea, Seoul 06591, Korea.
Windisch MP; Applied Molecular Virology Laboratory, Institut Pasteur Korea, 696 Sampyeong-dong, Bundang-gu, Seongnam-si, Gyeonggi-do 13488, Korea.; Division of Bio-Medical Science and Technology, University of Science and Technology, 217, Gajeong-ro, Yuseong-gu, Daejeon 34113, Korea.
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Źródło :
Viruses [Viruses] 2020 Aug 24; Vol. 12 (9). Date of Electronic Publication: 2020 Aug 24.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA, Viral/*isolation & purification
Hepatitis B virus/*isolation & purification
Virology/*methods
Cell Line ; Cost-Benefit Analysis ; DNA, Viral/analysis ; Genome, Viral/genetics ; Hepatitis B/virology ; Hepatitis B virus/genetics ; Humans ; Real-Time Polymerase Chain Reaction ; Reproducibility of Results ; Virology/economics
Czasopismo naukowe
Tytuł :
Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.
Autorzy :
Wang F; Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Baquero DP; Archaeal Virology Unit, Department of Microbiology, Institut Pasteur, 75015 Paris, France.; Collège Doctoral, Sorbonne Universités, 75005 Paris, France.
Beltran LC; Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Su Z; Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Osinski T; Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Zheng W; Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908.
Prangishvili D; Archaeal Virology Unit, Department of Microbiology, Institut Pasteur, 75015 Paris, France.; Academia Europaea Tbilisi Regional Knowledge Hub, Ivane Javakhishvili Tbilisi State University, 0179 Tbilisi, Georgia.
Krupovic M; Archaeal Virology Unit, Department of Microbiology, Institut Pasteur, 75015 Paris, France; .
Egelman EH; Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908; .
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2020 Aug 18; Vol. 117 (33), pp. 19643-19652. Date of Electronic Publication: 2020 Aug 05.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Archaeal Viruses/*chemistry
DNA Viruses/*chemistry
DNA, Viral/*chemistry
Sulfolobales/*virology
Sulfolobus/*virology
Archaeal Viruses/classification ; Archaeal Viruses/genetics ; Archaeal Viruses/ultrastructure ; Biological Evolution ; Capsid/chemistry ; Capsid/ultrastructure ; DNA Viruses/classification ; DNA Viruses/genetics ; DNA Viruses/ultrastructure ; DNA, Viral/genetics ; Extreme Environments ; Genome, Viral ; Phylogeny
Czasopismo naukowe

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