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Wyszukujesz frazę ""DNA-Directed RNA Polymerases"" wg kryterium: Temat


Tytuł :
The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases.
Autorzy :
Mäkinen JJ; Department of Biochemistry, University of Turku, Turku, Finland.
Shin Y; Department of Biochemistry and Molecular Biology, The Center for RNA Molecular Biology, The Pennsylvania State University, University Park, PA, USA.
Vieras E; Department of Biochemistry, University of Turku, Turku, Finland.
Virta P; Department of Chemistry, University of Turku, Turku, Finland.
Metsä-Ketelä M; Department of Biochemistry, University of Turku, Turku, Finland.
Murakami KS; Department of Biochemistry and Molecular Biology, The Center for RNA Molecular Biology, The Pennsylvania State University, University Park, PA, USA. .
Belogurov GA; Department of Biochemistry, University of Turku, Turku, Finland. .
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Źródło :
Nature communications [Nat Commun] 2021 Feb 04; Vol. 12 (1), pp. 796. Date of Electronic Publication: 2021 Feb 04.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Bacterial Proteins/*metabolism
DNA-Directed RNA Polymerases/*metabolism
Deoxyribonucleotides/*metabolism
Deoxyribose/*metabolism
Arginine/metabolism ; Bacterial Proteins/genetics ; Bacterial Proteins/isolation & purification ; Bacterial Proteins/ultrastructure ; Crystallography, X-Ray ; DNA-Directed RNA Polymerases/genetics ; DNA-Directed RNA Polymerases/isolation & purification ; DNA-Directed RNA Polymerases/ultrastructure ; Escherichia coli/enzymology ; Escherichia coli/genetics ; Kinetics ; Molecular Docking Simulation ; Promoter Regions, Genetic ; Recombinant Proteins/genetics ; Recombinant Proteins/isolation & purification ; Recombinant Proteins/metabolism ; Recombinant Proteins/ultrastructure ; Substrate Specificity ; Thermus thermophilus/enzymology ; Thermus thermophilus/genetics
Czasopismo naukowe
Tytuł :
Pre-termination Transcription Complex: Structure and Function.
Autorzy :
Hao Z; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Epshtein V; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Kim KH; Laboratory of Molecular Electron Microscopy, The Rockefeller University, New York, NY 10065, USA.
Proshkin S; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Moscow 119991, Russia.
Svetlov V; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Kamarthapu V; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA; Howard Hughes Medical Institute, New York University School of Medicine, New York, NY 10016, USA.
Bharati B; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA; Howard Hughes Medical Institute, New York University School of Medicine, New York, NY 10016, USA.
Mironov A; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Moscow 119991, Russia.
Walz T; Laboratory of Molecular Electron Microscopy, The Rockefeller University, New York, NY 10065, USA.
Nudler E; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA; Howard Hughes Medical Institute, New York University School of Medicine, New York, NY 10016, USA. Electronic address: .
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Źródło :
Molecular cell [Mol Cell] 2021 Jan 21; Vol. 81 (2), pp. 281-292.e8. Date of Electronic Publication: 2020 Dec 08.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Regulation, Bacterial*
Transcription Termination, Genetic*
DNA-Directed RNA Polymerases/*chemistry
Escherichia coli/*genetics
Escherichia coli Proteins/*chemistry
Peptide Elongation Factors/*chemistry
Transcription Factors/*chemistry
Transcriptional Elongation Factors/*chemistry
Amino Acid Sequence ; Binding Sites ; Cloning, Molecular ; Cryoelectron Microscopy ; DNA, Bacterial/chemistry ; DNA, Bacterial/genetics ; DNA, Bacterial/metabolism ; DNA-Directed RNA Polymerases/genetics ; DNA-Directed RNA Polymerases/metabolism ; Escherichia coli/metabolism ; Escherichia coli Proteins/genetics ; Escherichia coli Proteins/metabolism ; Genetic Vectors/chemistry ; Genetic Vectors/metabolism ; Models, Molecular ; Peptide Elongation Factors/genetics ; Peptide Elongation Factors/metabolism ; Protein Binding ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Protein Interaction Domains and Motifs ; Protein Subunits/chemistry ; Protein Subunits/genetics ; Protein Subunits/metabolism ; RNA, Bacterial/chemistry ; RNA, Bacterial/genetics ; RNA, Bacterial/metabolism ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Transcriptional Elongation Factors/genetics ; Transcriptional Elongation Factors/metabolism
Czasopismo naukowe
Tytuł :
Cryo-EM Structures Reveal Transcription Initiation Steps by Yeast Mitochondrial RNA Polymerase.
Autorzy :
De Wijngaert B; Rega Institute for Medical Research, Department of Microbiology, Immunology and Transplantation, KU Leuven, 3000 Leuven, Belgium.
Sultana S; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA.
Singh A; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA.
Dharia C; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA.
Vanbuel H; Rega Institute for Medical Research, Department of Microbiology, Immunology and Transplantation, KU Leuven, 3000 Leuven, Belgium.
Shen J; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA.
Vasilchuk D; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA.
Martinez SE; Rega Institute for Medical Research, Department of Microbiology, Immunology and Transplantation, KU Leuven, 3000 Leuven, Belgium.
Kandiah E; European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38043 Grenoble, France.
Patel SS; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA. Electronic address: .
Das K; Rega Institute for Medical Research, Department of Microbiology, Immunology and Transplantation, KU Leuven, 3000 Leuven, Belgium. Electronic address: .
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Źródło :
Molecular cell [Mol Cell] 2021 Jan 21; Vol. 81 (2), pp. 268-280.e5. Date of Electronic Publication: 2020 Dec 04.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA, Mitochondrial/*genetics
DNA-Directed RNA Polymerases/*genetics
Mitochondria/*genetics
Mitochondrial Proteins/*genetics
RNA, Mitochondrial/*genetics
Saccharomyces cerevisiae/*genetics
Saccharomyces cerevisiae Proteins/*genetics
Transcription Factors/*genetics
Binding Sites ; Cryoelectron Microscopy ; DNA, Mitochondrial/chemistry ; DNA, Mitochondrial/metabolism ; DNA-Directed RNA Polymerases/chemistry ; DNA-Directed RNA Polymerases/metabolism ; Mitochondria/metabolism ; Mitochondrial Proteins/chemistry ; Mitochondrial Proteins/metabolism ; Models, Molecular ; Nucleotide Motifs ; Promoter Regions, Genetic ; Protein Binding ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Protein Interaction Domains and Motifs ; RNA, Mitochondrial/chemistry ; RNA, Mitochondrial/metabolism ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/chemistry ; Saccharomyces cerevisiae Proteins/metabolism ; Thermodynamics ; Transcription Elongation, Genetic ; Transcription Factors/chemistry ; Transcription Factors/metabolism ; Transcription Initiation, Genetic
Czasopismo naukowe
Tytuł :
Structural Basis for Virulence Activation of Francisella tularensis.
Autorzy :
Travis BA; Department of Biochemistry, Duke University School of Medicine, Durham, NC 27710, USA.
Ramsey KM; Division of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA; Department of Cell and Molecular Biology and Department of Biomedical and Pharmaceutical Sciences, University of Rhode Island, Kingston, RI 02881, USA.
Prezioso SM; Division of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Tallo T; Division of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Wandzilak JM; Department of Cell and Molecular Biology and Department of Biomedical and Pharmaceutical Sciences, University of Rhode Island, Kingston, RI 02881, USA.
Hsu A; Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC 27709, USA.
Borgnia M; Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC 27709, USA.
Bartesaghi A; Department of Biochemistry, Duke University School of Medicine, Durham, NC 27710, USA; Department of Computer Science, Duke University, Durham, NC 27708, USA.
Dove SL; Division of Infectious Diseases, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA. Electronic address: .
Brennan RG; Department of Biochemistry, Duke University School of Medicine, Durham, NC 27710, USA. Electronic address: .
Schumacher MA; Department of Biochemistry, Duke University School of Medicine, Durham, NC 27710, USA. Electronic address: .
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Źródło :
Molecular cell [Mol Cell] 2021 Jan 07; Vol. 81 (1), pp. 139-152.e10. Date of Electronic Publication: 2020 Nov 19.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
DNA-Directed RNA Polymerases*/genetics
DNA-Directed RNA Polymerases*/metabolism
Francisella tularensis*/genetics
Francisella tularensis*/metabolism
Francisella tularensis*/pathogenicity
Promoter Regions, Genetic*
Sigma Factor*/genetics
Sigma Factor*/metabolism
Virulence Factors*/genetics
Virulence Factors*/metabolism
Escherichia coli/genetics ; Escherichia coli/metabolism
Czasopismo naukowe
Tytuł :
Structure and function of virion RNA polymerase of a crAss-like phage.
Autorzy :
Drobysheva AV; Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russia.
Panafidina SA; Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russia.; Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, Russia.
Kolesnik MV; Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russia.
Klimuk EI; Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russia.; Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, Russia.
Minakhin L; Waksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
Yakunina MV; Peter the Great St Petersburg Polytechnic University, St Petersburg, Russia.
Borukhov S; Department of Cell Biology and Neuroscience, Rowan University School of Osteopathic Medicine at Stratford, Stratford, NJ, USA.
Nilsson E; Department of Biology and Environmental Science, Faculty of Health and Life Sciences, Linnaeus University, Kalmar, Sweden.
Holmfeldt K; Department of Biology and Environmental Science, Faculty of Health and Life Sciences, Linnaeus University, Kalmar, Sweden.
Yutin N; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Makarova KS; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Koonin EV; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Severinov KV; Institute of Molecular Genetics, Russian Academy of Sciences, Moscow, Russia. .; Waksman Institute for Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ, USA. .
Leiman PG; Department of Biochemistry and Molecular Biology, Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX, USA. .
Sokolova ML; Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russia. .
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Źródło :
Nature [Nature] 2021 Jan; Vol. 589 (7841), pp. 306-309. Date of Electronic Publication: 2020 Nov 18.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Bacteriophages/*classification
Bacteriophages/*enzymology
DNA-Directed RNA Polymerases/*chemistry
DNA-Directed RNA Polymerases/*metabolism
Flavobacteriaceae/*virology
Bacteriophages/genetics ; Catalytic Domain ; Cell-Free System ; Crystallography, X-Ray ; DNA, Single-Stranded/biosynthesis ; DNA, Single-Stranded/genetics ; DNA-Directed RNA Polymerases/genetics ; Evolution, Molecular ; Gene Expression Regulation, Viral ; Genes, Viral/genetics ; Models, Biological ; Models, Molecular ; Protein Domains ; Protein Subunits/chemistry ; Protein Subunits/metabolism ; RNA Interference ; Transcription, Genetic
SCR Organism :
Cellulophaga baltica
Czasopismo naukowe
Tytuł :
The Full Region of N-Terminal in Polymerase of IBDV Plays an Important Role in Viral Replication and Pathogenicity: Either Partial Region or Single Amino Acid V4I Substitution Does Not Completely Lead to the Virus Attenuation to Three-Yellow Chickens.
Autorzy :
Wang W; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Huang Y; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Ji Z; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Chen G; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Zhang Y; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Qiao Y; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Shi M; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Li M; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Huang T; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Wei T; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
Mo M; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
He X; School of Marine Sciences and Biotechnology, Guangxi University for Nationalities, Nanning 530006, China.; Guangxi Key Laboratory Cultivation Base for Polysaccharide Materials and Modifications, Guangxi University for Nationalities, Nanning 530006, China.
Wei P; Institute for Poultry Science and Health, Guangxi University, Nanning 530005, China.
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Źródło :
Viruses [Viruses] 2021 Jan 14; Vol. 13 (1). Date of Electronic Publication: 2021 Jan 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Protein Interaction Domains and Motifs*
Virus Replication*/genetics
Birnaviridae Infections/*veterinary
DNA-Directed RNA Polymerases/*metabolism
Infectious bursal disease virus/*physiology
Poultry Diseases/*virology
Amino Acid Substitution ; Animals ; Cells, Cultured ; Chick Embryo ; Cloning, Molecular ; DNA-Directed RNA Polymerases/chemistry ; Fibroblasts ; Genome, Viral ; Infectious bursal disease virus/pathogenicity ; Mutation ; Protein Binding ; Reverse Genetics ; Viral Structural Proteins/chemistry ; Viral Structural Proteins/metabolism ; Virulence
Czasopismo naukowe
Tytuł :
A Growing Gap between the RNAP and the Lead Ribosome.
Autorzy :
Wang B; Department of Microbiology, The Ohio State University, Columbus, OH 43210, USA; The Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.
Artsimovitch I; Department of Microbiology, The Ohio State University, Columbus, OH 43210, USA; The Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA. Electronic address: .
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Źródło :
Trends in microbiology [Trends Microbiol] 2021 Jan; Vol. 29 (1), pp. 4-5. Date of Electronic Publication: 2020 Oct 10.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Comment
MeSH Terms :
Bacillus subtilis*/genetics
Bacillus subtilis*/metabolism
DNA-Directed RNA Polymerases*/genetics
Ribosomes/genetics ; Transcription, Genetic
Czasopismo naukowe
Tytuł :
The Polarity of an Amino Acid at Position 1891 of Severe Fever with Thrombocytopenia Syndrome Virus L Protein Is Critical for the Polymerase Activity.
Autorzy :
Noda K; School of Medicine, Hokkaido University, Sapporo 060-8638, Japan.
Tsuda Y; Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo 060-8638, Japan.
Kozawa F; School of Medicine, Hokkaido University, Sapporo 060-8638, Japan.
Igarashi M; Research Center for Zoonosis Control, Hokkaido University, Sapporo 001-0020, Japan.
Shimizu K; Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo 060-8638, Japan.
Arikawa J; Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo 060-8638, Japan.
Yoshimatsu K; Laboratory of Animal Experimentation, Institute for Genetic Medicine, Hokkaido University, Sapporo 060-0815, Japan.; Graduate School of Infectious Diseases, Hokkaido University, Sapporo 060-0815, Japan.
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Źródło :
Viruses [Viruses] 2020 Dec 27; Vol. 13 (1). Date of Electronic Publication: 2020 Dec 27.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Amino Acids*/chemistry
DNA-Directed RNA Polymerases/*metabolism
Phlebovirus/*physiology
Viral Proteins/*metabolism
Amino Acid Sequence ; Amino Acid Substitution ; Animals ; Cell Line ; DNA-Directed RNA Polymerases/chemistry ; DNA-Directed RNA Polymerases/genetics ; Fluorescent Antibody Technique ; Humans ; Models, Molecular ; Protein Conformation ; Severe Fever with Thrombocytopenia Syndrome ; Viral Proteins/chemistry ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł :
Molecular basis for RNA polymerase-dependent transcription complex recycling by the helicase-like motor protein HelD.
Autorzy :
Newing TP; Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, and Illawarra Health and Medical Research Institute, Wollongong, NSW, 2522, Australia.
Oakley AJ; Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, and Illawarra Health and Medical Research Institute, Wollongong, NSW, 2522, Australia.
Miller M; School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia.
Dawson CJ; School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia.
Brown SHJ; Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, and Illawarra Health and Medical Research Institute, Wollongong, NSW, 2522, Australia.
Bouwer JC; Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, and Illawarra Health and Medical Research Institute, Wollongong, NSW, 2522, Australia.
Tolun G; Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, and Illawarra Health and Medical Research Institute, Wollongong, NSW, 2522, Australia. .
Lewis PJ; School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia. .
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Źródło :
Nature communications [Nat Commun] 2020 Dec 18; Vol. 11 (1), pp. 6420. Date of Electronic Publication: 2020 Dec 18.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Transcription, Genetic*
Bacillus subtilis/*enzymology
Bacterial Proteins/*chemistry
Bacterial Proteins/*metabolism
DNA-Directed RNA Polymerases/*chemistry
DNA-Directed RNA Polymerases/*metabolism
Bacterial Proteins/ultrastructure ; Cryoelectron Microscopy ; DNA-Directed RNA Polymerases/ultrastructure ; Imaging, Three-Dimensional ; Models, Molecular ; Protein Binding ; Transcription Elongation, Genetic
Czasopismo naukowe
Tytuł :
Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase.
Autorzy :
Kouba T; EMBL Grenoble, 71 Avenue des Martyrs, Grenoble, France. .
Koval' T; Institute of Biotechnology of the Czech Academy of Sciences, Centre BIOCEV, Průmyslová 595, 252 50, Vestec, Czech Republic.
Sudzinová P; Institute of Microbiology of The Czech Academy of Sciences, Prague, Czech Republic.
Pospíšil J; Institute of Microbiology of The Czech Academy of Sciences, Prague, Czech Republic.
Brezovská B; Institute of Microbiology of The Czech Academy of Sciences, Prague, Czech Republic.
Hnilicová J; Institute of Microbiology of The Czech Academy of Sciences, Prague, Czech Republic.
Šanderová H; Institute of Microbiology of The Czech Academy of Sciences, Prague, Czech Republic.
Janoušková M; Institute of Microbiology of The Czech Academy of Sciences, Prague, Czech Republic.
Šiková M; Institute of Microbiology of The Czech Academy of Sciences, Prague, Czech Republic.
Halada P; Institute of Microbiology of The Czech Academy of Sciences, Prague, Czech Republic.
Sýkora M; Institute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czech Republic.
Barvík I; Faculty of Mathematics and Physics, Institute of Physics, Charles University, Prague, Czech Republic.
Nováček J; CEITEC, Masaryk University, Brno, Czech Republic.
Trundová M; Institute of Biotechnology of the Czech Academy of Sciences, Centre BIOCEV, Průmyslová 595, 252 50, Vestec, Czech Republic.
Dušková J; Institute of Biotechnology of the Czech Academy of Sciences, Centre BIOCEV, Průmyslová 595, 252 50, Vestec, Czech Republic.
Skálová T; Institute of Biotechnology of the Czech Academy of Sciences, Centre BIOCEV, Průmyslová 595, 252 50, Vestec, Czech Republic.
Chon U; Department of Biochemistry and Molecular Biology, The Center for RNA Molecular Biology, Pennsylvania State University, University Park, PA, 16802, USA.
Murakami KS; Department of Biochemistry and Molecular Biology, The Center for RNA Molecular Biology, Pennsylvania State University, University Park, PA, 16802, USA.
Dohnálek J; Institute of Biotechnology of the Czech Academy of Sciences, Centre BIOCEV, Průmyslová 595, 252 50, Vestec, Czech Republic. .
Krásný L; Institute of Microbiology of The Czech Academy of Sciences, Prague, Czech Republic. .
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Źródło :
Nature communications [Nat Commun] 2020 Dec 18; Vol. 11 (1), pp. 6419. Date of Electronic Publication: 2020 Dec 18.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Bacterial Proteins/*metabolism
DNA-Directed RNA Polymerases/*metabolism
Mycobacterium smegmatis/*enzymology
Nucleic Acids/*metabolism
Bacterial Proteins/chemistry ; Bacterial Proteins/ultrastructure ; Catalytic Domain ; Cryoelectron Microscopy ; DNA, Bacterial/chemistry ; DNA, Bacterial/metabolism ; DNA-Directed RNA Polymerases/chemistry ; DNA-Directed RNA Polymerases/ultrastructure ; Models, Molecular ; Protein Binding ; Protein Domains
Czasopismo naukowe
Tytuł :
Single-pass transcription by T7 RNA polymerase.
Autorzy :
Passalacqua LFM; Department of Pharmaceutical Sciences, University of California, Irvine, California 92697, USA.
Dingilian AI; Department of Pharmaceutical Sciences, University of California, Irvine, California 92697, USA.
Lupták A; Department of Pharmaceutical Sciences, University of California, Irvine, California 92697, USA.; Department of Chemistry, University of California, Irvine, California 92697, USA.; Department of Molecular Biology and Biochemistry, University of California, Irvine, California 92697, USA.
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Źródło :
RNA (New York, N.Y.) [RNA] 2020 Dec; Vol. 26 (12), pp. 2062-2071. Date of Electronic Publication: 2020 Sep 21.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Promoter Regions, Genetic*
Transcription, Genetic*
Bacteriophage T7/*enzymology
DNA-Directed RNA Polymerases/*metabolism
RNA, Catalytic/*metabolism
RNA, Messenger/*genetics
Viral Proteins/*metabolism
DNA-Directed RNA Polymerases/chemistry ; DNA-Directed RNA Polymerases/genetics ; Protein Conformation ; RNA, Catalytic/genetics ; Viral Proteins/chemistry ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł :
Direct binding of TFEα opens DNA binding cleft of RNA polymerase.
Autorzy :
Jun SH; Electron Microscopy Research Center, Korea Basic Science Institute, Chungcheongbukdo, 28119, Republic of Korea. .; Department of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Republic of Korea. .; Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA. .
Hyun J; Electron Microscopy Research Center, Korea Basic Science Institute, Chungcheongbukdo, 28119, Republic of Korea.; Molecular Cryo-electron Microscopy Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, 904-0495, Japan.
Cha JS; Department of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Republic of Korea.
Kim H; Department of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Republic of Korea.
Bartlett MS; Department of Biology, the Portland State University, Portland, OR, 97207, USA.
Cho HS; Department of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Republic of Korea. .
Murakami KS; Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, 16802, USA. .
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Źródło :
Nature communications [Nat Commun] 2020 Nov 30; Vol. 11 (1), pp. 6123. Date of Electronic Publication: 2020 Nov 30.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA/*metabolism
DNA-Binding Proteins/*chemistry
DNA-Binding Proteins/*metabolism
DNA-Directed RNA Polymerases/*chemistry
DNA-Directed RNA Polymerases/*metabolism
Thermococcus/*enzymology
Amino Acid Sequence ; Cryoelectron Microscopy ; Crystallography, X-Ray ; DNA-Binding Proteins/genetics ; DNA-Directed RNA Polymerases/genetics ; Models, Molecular ; Polytetrafluoroethylene ; Promoter Regions, Genetic ; Protein Binding ; Protein Conformation ; Sequence Analysis, Protein ; Thermococcus/genetics ; Transcription, Genetic
Czasopismo naukowe
Tytuł :
The δ subunit and NTPase HelD institute a two-pronged mechanism for RNA polymerase recycling.
Autorzy :
Pei HH; Laboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Takustraβe 6, 14195, Berlin, Germany.
Hilal T; Institute of Chemistry and Biochemistry, Research Center of Electron Microscopy and Core Facility BioSupraMol, Freie Universität Berlin, Fabeckstr. 36a, 14195, Berlin, Germany.
Chen ZA; Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355, Berlin, Germany.
Huang YH; Laboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Takustraβe 6, 14195, Berlin, Germany.
Gao Y; Laboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Takustraβe 6, 14195, Berlin, Germany.
Said N; Laboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Takustraβe 6, 14195, Berlin, Germany.
Loll B; Laboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Takustraβe 6, 14195, Berlin, Germany.
Rappsilber J; Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355, Berlin, Germany.; University of Edinburgh, Wellcome Centre for Cell Biology, Edinburgh, EH9 3BF, UK.
Belogurov GA; Department of Biochemistry, University of Turku, 20014, Turku, Finland.
Artsimovitch I; Department of Microbiology and Center for RNA Biology, The Ohio State University, Columbus, OH, USA.
Wahl MC; Laboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Takustraβe 6, 14195, Berlin, Germany. .; Helmholtz-Zentrum Berlin für Materialien und Energie, Macromolecular Crystallography, Albert-Einstein-Straße 15, 12489, Berlin, Germany. .
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Źródło :
Nature communications [Nat Commun] 2020 Dec 18; Vol. 11 (1), pp. 6418. Date of Electronic Publication: 2020 Dec 18.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Bacillus subtilis/*enzymology
Bacterial Proteins/*metabolism
DNA-Directed RNA Polymerases/*metabolism
Nucleoside-Triphosphatase/*metabolism
Protein Subunits/*metabolism
Adenosine Triphosphate/metabolism ; Bacterial Proteins/chemistry ; Catalytic Domain ; DNA-Directed RNA Polymerases/chemistry ; Models, Molecular ; Nucleoside-Triphosphatase/chemistry ; Protein Multimerization ; Protein Subunits/chemistry
Czasopismo naukowe
Tytuł :
Phosphodiester modifications in mRNA poly(A) tail prevent deadenylation without compromising protein expression.
Autorzy :
Strzelecka D; Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland.
Smietanski M; Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland.
Sikorski PJ; Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland.
Warminski M; Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland.
Kowalska J; Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, 02-093 Warsaw, Poland.
Jemielity J; Centre of New Technologies, University of Warsaw, 02-097 Warsaw, Poland.
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Źródło :
RNA (New York, N.Y.) [RNA] 2020 Dec; Vol. 26 (12), pp. 1815-1837. Date of Electronic Publication: 2020 Aug 20.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Protein Biosynthesis*
DNA-Directed RNA Polymerases/*metabolism
Phosphorothioate Oligonucleotides/*chemistry
Poly A/*metabolism
RNA, Messenger/*metabolism
Adenosine Triphosphate/metabolism ; Animals ; DNA-Directed RNA Polymerases/genetics ; Dendritic Cells/cytology ; Dendritic Cells/metabolism ; HeLa Cells ; Humans ; Mice ; Poly A/chemistry ; Poly A/genetics ; Protein Processing, Post-Translational ; RNA, Messenger/chemistry ; RNA, Messenger/genetics ; Transcription, Genetic
Czasopismo naukowe
Tytuł :
Multisubunit RNA Polymerases of Jumbo Bacteriophages.
Autorzy :
Sokolova ML; Center of Life Sciences, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia.
Misovetc I; Center of Life Sciences, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia.
V Severinov K; Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
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Źródło :
Viruses [Viruses] 2020 Sep 23; Vol. 12 (10). Date of Electronic Publication: 2020 Sep 23.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
DNA-Directed RNA Polymerases*/chemistry
DNA-Directed RNA Polymerases*/metabolism
Viral Proteins*/chemistry
Viral Proteins*/metabolism
Bacteriophages/*enzymology
DNA, Single-Stranded/metabolism ; Promoter Regions, Genetic ; Protein Subunits ; Transcription, Genetic
Czasopismo naukowe
Tytuł :
Ureidothiophene inhibits interaction of bacterial RNA polymerase with -10 promotor element.
Autorzy :
Harbottle J; Centre for Bacterial Cell Biology, Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Baddiley-Clark Building, Richardson Road, Newcastle Upon Tyne NE2 4AX, UK.
Zenkin N; Centre for Bacterial Cell Biology, Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Baddiley-Clark Building, Richardson Road, Newcastle Upon Tyne NE2 4AX, UK.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Aug 20; Vol. 48 (14), pp. 7914-7923.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Promoter Regions, Genetic*
Anti-Bacterial Agents/*pharmacology
DNA-Directed RNA Polymerases/*antagonists & inhibitors
Thiophenes/*pharmacology
Transcription Initiation, Genetic/*drug effects
Anti-Bacterial Agents/chemistry ; Bacteria/enzymology ; DNA-Directed RNA Polymerases/chemistry ; DNA-Directed RNA Polymerases/metabolism ; Enzyme Inhibitors/chemistry ; Enzyme Inhibitors/pharmacology ; Sigma Factor/antagonists & inhibitors ; Sigma Factor/chemistry ; Thiophenes/chemistry
Czasopismo naukowe
Tytuł :
Clusters of bacterial RNA polymerase are biomolecular condensates that assemble through liquid-liquid phase separation.
Autorzy :
Ladouceur AM; Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada.
Parmar BS; Department of Physics, McGill University, Montreal, QC H3A 2T8, Canada.
Biedzinski S; Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada.
Wall J; Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada.
Tope SG; Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada.
Cohn D; Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada.
Kim A; Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada.
Soubry N; Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada.
Reyes-Lamothe R; Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada.
Weber SC; Department of Biology, McGill University, Montreal, QC H3A 1B1, Canada; .; Department of Physics, McGill University, Montreal, QC H3A 2T8, Canada.
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2020 Aug 04; Vol. 117 (31), pp. 18540-18549. Date of Electronic Publication: 2020 Jul 16.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA-Directed RNA Polymerases/*metabolism
Escherichia coli/*enzymology
Cell Nucleolus/genetics ; Cell Nucleolus/metabolism ; DNA, Bacterial/genetics ; DNA, Bacterial/metabolism ; DNA-Directed RNA Polymerases/chemistry ; DNA-Directed RNA Polymerases/genetics ; Escherichia coli/chemistry ; Escherichia coli/genetics ; Escherichia coli/growth & development ; Escherichia coli Proteins/genetics ; Escherichia coli Proteins/metabolism ; Single Molecule Imaging ; Transcriptional Elongation Factors/genetics ; Transcriptional Elongation Factors/metabolism
Czasopismo naukowe
Tytuł :
Closing and opening of the RNA polymerase trigger loop.
Autorzy :
Mazumder A; Waksman Institute, Rutgers University, Piscataway, NJ 08854.; Department of Chemistry, Rutgers University, Piscataway, NJ 08854.; Biological Physics Research Group, Clarendon Laboratory, Department of Physics, University of Oxford, OX1 3PU Oxford, United Kingdom.
Lin M; Waksman Institute, Rutgers University, Piscataway, NJ 08854.; Department of Chemistry, Rutgers University, Piscataway, NJ 08854.
Kapanidis AN; Biological Physics Research Group, Clarendon Laboratory, Department of Physics, University of Oxford, OX1 3PU Oxford, United Kingdom .
Ebright RH; Waksman Institute, Rutgers University, Piscataway, NJ 08854; .; Department of Chemistry, Rutgers University, Piscataway, NJ 08854.
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2020 Jul 07; Vol. 117 (27), pp. 15642-15649. Date of Electronic Publication: 2020 Jun 22.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Transcription, Genetic*
DNA/*chemistry
DNA-Directed RNA Polymerases/*chemistry
RNA/*chemistry
Catalytic Domain ; DNA/genetics ; DNA-Directed RNA Polymerases/genetics ; DNA-Directed RNA Polymerases/ultrastructure ; Escherichia coli/genetics ; Fluorescence Resonance Energy Transfer ; Models, Molecular ; Nucleotides ; Protein Conformation ; Protein Folding ; RNA/genetics ; Single Molecule Imaging
Czasopismo naukowe
Tytuł :
Structural basis for transcription inhibition by E. coli SspA.
Autorzy :
Wang F; Department of Microbiology and Immunology, School of Medicine & Holistic Integrative Medicine, Nanjing University of Chinese Medicine, Nanjing, China.; State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, China.; Jiangsu Collaborative Innovation Center of Chinese Medicinal Resources Industrialization, Nanjing 210023, China.
Shi J; Department of Biophysics, Zhejiang University School of Medicine, Hangzhou, China.; Department of Pathology of Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
He D; Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.; University of Chinese Academy of Sciences, Beijing 100049, China.
Tong B; Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China.
Zhang C; Department of Microbiology and Immunology, School of Medicine & Holistic Integrative Medicine, Nanjing University of Chinese Medicine, Nanjing, China.
Wen A; Department of Biophysics, Zhejiang University School of Medicine, Hangzhou, China.; Department of Pathology of Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Zhang Y; Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China.
Feng Y; Department of Biophysics, Zhejiang University School of Medicine, Hangzhou, China.; Department of Pathology of Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Lin W; Department of Microbiology and Immunology, School of Medicine & Holistic Integrative Medicine, Nanjing University of Chinese Medicine, Nanjing, China.; State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing, China.; Jiangsu Collaborative Innovation Center of Chinese Medicinal Resources Industrialization, Nanjing 210023, China.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Sep 25; Vol. 48 (17), pp. 9931-9942.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Promoter Regions, Genetic*
DNA-Directed RNA Polymerases/*genetics
Escherichia coli Proteins/*chemistry
Binding Sites ; Cryoelectron Microscopy ; DNA-Directed RNA Polymerases/metabolism ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Escherichia coli Proteins/metabolism ; Molecular Docking Simulation ; Protein Binding
Czasopismo naukowe
Tytuł :
ISG15 overexpression compensates the defect of Crimean-Congo hemorrhagic fever virus polymerase bearing a protease-inactive ovarian tumor domain.
Autorzy :
Devignot S; Institute for Virology, FB10-Veterinary Medicine, Justus-Liebig University, Giessen, Germany.
Kromer T; Faculty of Health, Safety, Society, Furtwangen University, Furtwangen, Germany.
Mirazimi A; Public Health Agency of Sweden, Solna, Sweden.; National Veterinary Institute, Solna, Sweden.; Karolinska Institute, Stockholm, Sweden.
Weber F; Institute for Virology, FB10-Veterinary Medicine, Justus-Liebig University, Giessen, Germany.
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Źródło :
PLoS neglected tropical diseases [PLoS Negl Trop Dis] 2020 Sep 15; Vol. 14 (9), pp. e0008610. Date of Electronic Publication: 2020 Sep 15 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Cytokines/*genetics
DNA-Directed RNA Polymerases/*genetics
Hemorrhagic Fever Virus, Crimean-Congo/*genetics
Hemorrhagic Fever Virus, Crimean-Congo/*immunology
Peptide Hydrolases/*genetics
Ubiquitins/*genetics
A549 Cells ; Animals ; Cell Line, Tumor ; Chlorocebus aethiops ; Cytokines/metabolism ; DNA-Directed RNA Polymerases/metabolism ; Hemorrhagic Fever, Crimean/pathology ; Humans ; Interferon Type I/immunology ; Protein Domains/genetics ; Protein Processing, Post-Translational/genetics ; Ubiquitins/metabolism ; Vero Cells
Czasopismo naukowe

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