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Tytuł :
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes.
Autorzy :
Kasmanas JC; Institute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, Brazil.; Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ GmbH, Leipzig, Saxony 04318, Germany.; Department of Computer Science and Interdisciplinary Center of Bioinformatics, University of Leipzig, Leipzig, Saxony 04107, Germany.
Bartholomäus A; GFZ German Research Centre for Geosciences, Section 3.7 Geomicrobiology, Telegrafenberg, 14473 Potsdam, Germany.
Corrêa FB; Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ GmbH, Leipzig, Saxony 04318, Germany.; Department of Computer Science and Interdisciplinary Center of Bioinformatics, University of Leipzig, Leipzig, Saxony 04107, Germany.
Tal T; Department of Bioanalytical Ecotoxicology, Helmholtz Centre for Environmental Research - UFZ GmbH, Leipzig, Saxony 04318, Germany.
Jehmlich N; Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research - UFZ GmbH, Leipzig, Saxony 04318, Germany.
Herberth G; Department of Environmental Immunology, Helmholtz Centre for Environmental Research - UFZ GmbH, Leipzig, Saxony 04318, Germany.
von Bergen M; Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research - UFZ GmbH, Leipzig, Saxony 04318, Germany.; Institute of Biochemistry, Faculty of Life Sciences, University of Leipzig, Leipzig, Saxony 04107, Germany.
Stadler PF; Department of Computer Science and Interdisciplinary Center of Bioinformatics, University of Leipzig, Leipzig, Saxony 04107, Germany.
Carvalho ACPLF; Institute of Mathematics and Computer Sciences, University of São Paulo, São Carlos, Brazil.
Nunes da Rocha U; Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ GmbH, Leipzig, Saxony 04318, Germany.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D743-D750.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Data Curation*
Metagenome*
Databases, Genetic/*standards
Metadata/*standards
Humans ; Metagenomics ; Reference Standards ; User-Computer Interface
Czasopismo naukowe
Tytuł :
Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes.
Autorzy :
Garczarek L; Sorbonne Université & CNRS, UMR 7144 'Adaptation & Diversity in the Marine Environment' (AD2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France.
Guyet U; Sorbonne Université & CNRS, UMR 7144 'Adaptation & Diversity in the Marine Environment' (AD2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France.
Doré H; Sorbonne Université & CNRS, UMR 7144 'Adaptation & Diversity in the Marine Environment' (AD2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France.
Farrant GK; Sorbonne Université & CNRS, UMR 7144 'Adaptation & Diversity in the Marine Environment' (AD2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France.; CNRS & Sorbonne Université, FR 2424, ABiMS Platform, Station Biologique de Roscoff (SBR), F-29680 Roscoff, France.
Hoebeke M; CNRS & Sorbonne Université, FR 2424, ABiMS Platform, Station Biologique de Roscoff (SBR), F-29680 Roscoff, France.
Brillet-Guéguen L; CNRS & Sorbonne Université, FR 2424, ABiMS Platform, Station Biologique de Roscoff (SBR), F-29680 Roscoff, France.; Sorbonne Université & CNRS, UMR 8227 'Integrative Biology of Marine Models' (LBI2M), Station Biologique de Roscoff (SBR), F-29680 Roscoff, France.
Bisch A; Sorbonne Université & CNRS, UMR 7144 'Adaptation & Diversity in the Marine Environment' (AD2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France.; CNRS & Sorbonne Université, FR 2424, ABiMS Platform, Station Biologique de Roscoff (SBR), F-29680 Roscoff, France.
Ferrieux M; Sorbonne Université & CNRS, UMR 7144 'Adaptation & Diversity in the Marine Environment' (AD2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France.
Siltanen J; CNRS & Sorbonne Université, FR 2424, ABiMS Platform, Station Biologique de Roscoff (SBR), F-29680 Roscoff, France.
Corre E; CNRS & Sorbonne Université, FR 2424, ABiMS Platform, Station Biologique de Roscoff (SBR), F-29680 Roscoff, France.
Le Corguillé G; CNRS & Sorbonne Université, FR 2424, ABiMS Platform, Station Biologique de Roscoff (SBR), F-29680 Roscoff, France.
Ratin M; Sorbonne Université & CNRS, UMR 7144 'Adaptation & Diversity in the Marine Environment' (AD2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France.
Pitt FD; University of Warwick, School of Life Sciences, Coventry CV4 7AL, UK.
Ostrowski M; University of Warwick, School of Life Sciences, Coventry CV4 7AL, UK.
Conan M; Université de Rennes 1, INSERM, EHESP, IRSET, F-35043 Rennes, France.
Siegel A; Université de Rennes 1, INRIA, CNRS, IRISA, F-35000 Rennes, France.
Labadie K; Genoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, F-91000 Evry, France.
Aury JM; Genoscope, Institut de biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, F-91000 Evry, France.
Wincker P; Génomique Métabolique, Genoscope, Institut de biologie François Jacob, CEA, CNRS, Université d'Évry, Université Paris-Saclay, F-91000 Evry, France.
Scanlan DJ; University of Warwick, School of Life Sciences, Coventry CV4 7AL, UK.
Partensky F; Sorbonne Université & CNRS, UMR 7144 'Adaptation & Diversity in the Marine Environment' (AD2M), Station Biologique de Roscoff (SBR), 29680 Roscoff, France.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D667-D676.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Data Curation*
Databases, Genetic*
Genome, Bacterial*
Information Systems*
Aquatic Organisms/*genetics
Cyanobacteria/*genetics
Bacterial Proteins/genetics ; Geography ; Likelihood Functions ; Phylogeny ; User-Computer Interface
Czasopismo naukowe
Tytuł :
LitCovid: an open database of COVID-19 literature.
Autorzy :
Chen Q; National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD 20892, USA.
Allot A; National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD 20892, USA.
Lu Z; National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD 20892, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D1534-D1540.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms :
Databases, Factual*
COVID-19/*prevention & control
Data Curation/*statistics & numerical data
Data Mining/*statistics & numerical data
PubMed/*statistics & numerical data
SARS-CoV-2/*isolation & purification
COVID-19/epidemiology ; COVID-19/virology ; Data Curation/methods ; Data Mining/methods ; Humans ; Internet ; Machine Learning ; Pandemics ; Publications/statistics & numerical data ; SARS-CoV-2/physiology
Czasopismo naukowe
Tytuł :
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.
Autorzy :
Bastian FB; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Roux J; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Niknejad A; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Comte A; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Fonseca Costa SS; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
de Farias TM; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Moretti S; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Parmentier G; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
de Laval VR; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Rosikiewicz M; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Wollbrett J; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Echchiki A; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Escoriza A; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Gharib WH; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Gonzales-Porta M; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Jarosz Y; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Laurenczy B; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Moret P; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Person E; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Roelli P; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Sanjeev K; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Seppey M; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Robinson-Rechavi M; Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D831-D847.
Typ publikacji :
Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Data Curation*
Databases, Genetic*
Transcriptome/*genetics
Animals ; Gene Expression Regulation ; Molecular Sequence Annotation ; User-Computer Interface
Czasopismo naukowe
Tytuł :
Europe PMC in 2020.
Autorzy :
Ferguson C; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Araújo D; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Faulk L; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Gou Y; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Hamelers A; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Huang Z; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Ide-Smith M; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Levchenko M; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Marinos N; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Nambiar R; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Nassar M; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Parkin M; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Pi X; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Rahman F; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Rogers F; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Roochun Y; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Saha S; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Selim M; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Shafique Z; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Sharma S; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Stephenson D; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Talo' F; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Thouvenin A; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Tirunagari S; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Vartak V; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Venkatesan A; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
Yang X; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
McEntyre J; Literature Services, EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D1507-D1514.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
PubMed*
Biological Science Disciplines/*statistics & numerical data
COVID-19/*prevention & control
Data Curation/*statistics & numerical data
Data Mining/*statistics & numerical data
Databases, Factual/*statistics & numerical data
SARS-CoV-2/*isolation & purification
Biological Science Disciplines/methods ; Biomedical Research/methods ; Biomedical Research/statistics & numerical data ; COVID-19/epidemiology ; COVID-19/virology ; Data Curation/methods ; Data Mining/methods ; Epidemics ; Europe ; Humans ; Internet ; SARS-CoV-2/physiology
Czasopismo naukowe
Tytuł :
Maximizing the reusability of gene expression data by predicting missing metadata.
Autorzy :
Lung PY; Department of Statistics, Florida State University, Tallahassee, United States of America.
Zhong D; Department of Statistics, Florida State University, Tallahassee, United States of America.
Pang X; Insilicom LLC, Tallahassee, United States of America.
Li Y; Department of Breast Surgery, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, China.
Zhang J; Department of Statistics, Florida State University, Tallahassee, United States of America.
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Źródło :
PLoS computational biology [PLoS Comput Biol] 2020 Nov 06; Vol. 16 (11), pp. e1007450. Date of Electronic Publication: 2020 Nov 06 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Data Curation*
Gene Expression*
Metadata*
Computational Biology
Czasopismo naukowe
Tytuł :
The National Library of Medicine Global Health Events web archive, coronavirus disease (COVID-19) pandemic collecting.
Autorzy :
Speaker SL; , Historian for the Digital Manuscripts Program, History of Medicine Division, National Library of Medicine, Bethesda, MD.
Moffatt C; , Manager of the Digital Manuscripts Program, History of Medicine Division, and Chair, Web Collecting and Archiving Working Group, National Library of Medicine, Bethesda, MD.
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Źródło :
Journal of the Medical Library Association : JMLA [J Med Libr Assoc] 2020 Oct 01; Vol. 108 (4), pp. 656-662.
Typ publikacji :
Journal Article
MeSH Terms :
Archives*
Data Curation*
National Library of Medicine (U.S.)*
Coronavirus Infections/*epidemiology
Pneumonia, Viral/*epidemiology
Betacoronavirus ; COVID-19 ; Data Collection ; Global Health ; Humans ; Pandemics ; Quality Control ; SARS-CoV-2 ; United States
Czasopismo naukowe
Tytuł :
Virtual resident showcase: leveraging an institutional repository during COVID-19 social distancing.
Autorzy :
Martin HJ; , Director, System Library Services, Providence St. Joseph Health, Portland, OR.
Schwartz A; , Digital Asset Librarian, System Library Services, Providence St. Joseph Health, Missoula, MT.
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Źródło :
Journal of the Medical Library Association : JMLA [J Med Libr Assoc] 2020 Oct 01; Vol. 108 (4), pp. 645-646.
Typ publikacji :
Journal Article
MeSH Terms :
Biomedical Research*
Data Curation*
Internship and Residency*
Libraries, Medical*
Betacoronavirus ; COVID-19 ; Coronavirus Infections/epidemiology ; Humans ; Oregon ; Pandemics ; Pneumonia, Viral/epidemiology ; SARS-CoV-2
Czasopismo naukowe
Tytuł :
Integrating QSAR models predicting acute contact toxicity and mode of action profiling in honey bees (A. mellifera): Data curation using open source databases, performance testing and validation.
Autorzy :
Carnesecchi E; Institute for Risk Assessment Sciences (IRAS), Utrecht University, PO Box 80177, 3508 TD Utrecht, the Netherlands; Laboratory of Chemistry and Environmental Toxicology, Department of Environmental Health Sciences, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milan, Italy. Electronic address: .
Toma C; Institute for Risk Assessment Sciences (IRAS), Utrecht University, PO Box 80177, 3508 TD Utrecht, the Netherlands; Laboratory of Chemistry and Environmental Toxicology, Department of Environmental Health Sciences, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milan, Italy.
Roncaglioni A; Laboratory of Chemistry and Environmental Toxicology, Department of Environmental Health Sciences, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milan, Italy.
Kramer N; Institute for Risk Assessment Sciences (IRAS), Utrecht University, PO Box 80177, 3508 TD Utrecht, the Netherlands.
Benfenati E; Laboratory of Chemistry and Environmental Toxicology, Department of Environmental Health Sciences, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milan, Italy.
Dorne JLCM; European Food Safety Authority (EFSA), Scientific Committee and Emerging Risks Unit, Via Carlo Magno 1A, 43126 Parma, Italy.
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Źródło :
The Science of the total environment [Sci Total Environ] 2020 Sep 15; Vol. 735, pp. 139243. Date of Electronic Publication: 2020 May 17.
Typ publikacji :
Journal Article
MeSH Terms :
Data Curation*
Pesticides*
Animals ; Bees ; Ecosystem ; Quantitative Structure-Activity Relationship ; Reproducibility of Results
Czasopismo naukowe
Tytuł :
ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network.
Autorzy :
Atallah MB; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA.
Tandon V; Stanford University, Stanford, CA, USA.
Hiam KJ; Departments of Otolaryngology and Microbiology & Immunology, Helen Diller Family Comprehensive Cancer Center, Parker Institute for Cancer Immunotherapy, Chan Zuckerberg Biohub, University of California, San Francisco, CA, USA.
Boyce H; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA.
Hori M; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA.
Atallah W; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA.
Spitzer MH; Departments of Otolaryngology and Microbiology & Immunology, Helen Diller Family Comprehensive Cancer Center, Parker Institute for Cancer Immunotherapy, Chan Zuckerberg Biohub, University of California, San Francisco, CA, USA.
Engleman E; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Mallick P; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Aug 10; Vol. 21 (1), pp. 346. Date of Electronic Publication: 2020 Aug 10.
Typ publikacji :
Journal Article
MeSH Terms :
Cell Communication*
Data Curation*
Protein Interaction Maps*
Software*
Systems Biology*
Extracellular Space/*metabolism
Immune System/*metabolism
Animals ; Humans ; Mice ; Models, Immunological
Czasopismo naukowe
Tytuł :
An Evolutionary Approach to the Annotation of Discharge Summaries.
Autorzy :
Lohr C; Jena University Language & Information Engineering (JULIE) Lab Friedrich-Schiller-Universität Jena, Germany.; SMITH Consortium of the German Medical Informatics Initiative.
Modersohn L; Jena University Language & Information Engineering (JULIE) Lab Friedrich-Schiller-Universität Jena, Germany.; SMITH Consortium of the German Medical Informatics Initiative.
Hellrich J; Jena University Language & Information Engineering (JULIE) Lab Friedrich-Schiller-Universität Jena, Germany.; SMITH Consortium of the German Medical Informatics Initiative.
Kolditz T; Jena University Language & Information Engineering (JULIE) Lab Friedrich-Schiller-Universität Jena, Germany.; SMITH Consortium of the German Medical Informatics Initiative.
Hahn U; Jena University Language & Information Engineering (JULIE) Lab Friedrich-Schiller-Universität Jena, Germany.; SMITH Consortium of the German Medical Informatics Initiative.
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Źródło :
Studies in health technology and informatics [Stud Health Technol Inform] 2020 Jun 16; Vol. 270, pp. 28-32.
Typ publikacji :
Journal Article
MeSH Terms :
Data Curation*
Patient Discharge*
Humans
Czasopismo naukowe
Tytuł :
Data curation and modeling of compositional heterogeneity in insect phylogenomics: A case study of the phylogeny of Dytiscoidea (Coleoptera: Adephaga).
Autorzy :
Cai C; State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, and Centre for Excellence in Life and Paleoenvironment, Chinese Academy of Sciences, Nanjing 210008, China; School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK. Electronic address: .
Tihelka E; Department of Animal Science, Hartpury College, Hartpury GL19 3BE, UK.
Pisani D; School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK; School of Biological Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.
Donoghue PCJ; School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK. Electronic address: .
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Źródło :
Molecular phylogenetics and evolution [Mol Phylogenet Evol] 2020 Jun; Vol. 147, pp. 106782. Date of Electronic Publication: 2020 Mar 05.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Data Curation*
Genetic Heterogeneity*
Phylogeny*
Coleoptera/*classification
Coleoptera/*genetics
Amino Acids/genetics ; Animals ; Bayes Theorem ; Models, Genetic
Czasopismo naukowe
Tytuł :
[Practical use of biobank information management system (BIMS) for clinical-biological annotations in biobanks].
Autorzy :
Le Queau C; MSc biobanks and complex data management, Université Côte d'Azur, Centre hospitalier universitaire de Nice, Hôpital Pasteur, Biobanque BB-0033-00025, Nice, France.
Ann Phillips W; MSc biobanks and complex data management, Université Côte d'Azur, Centre hospitalier universitaire de Nice, Hôpital Pasteur, Biobanque BB-0033-00025, Nice, France.
Srinivasan A; MSc biobanks and complex data management, Université Côte d'Azur, Centre hospitalier universitaire de Nice, Hôpital Pasteur, Biobanque BB-0033-00025, Nice, France.
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Transliterated Title :
Étude du système de gestion de l’information (biobank information management system) pour les annotations clinico-biologiques des biobanques.
Źródło :
Medecine sciences : M/S [Med Sci (Paris)] 2020 Mar; Vol. 36 (3), pp. 285-288. Date of Electronic Publication: 2020 Mar 31.
Typ publikacji :
Wiadomości
MeSH Terms :
Data Curation*/economics
Data Curation*/methods
Data Curation*/standards
Biological Specimen Banks/*organization & administration
Biomedical Research/*methods
Health Information Management/*methods
Biological Specimen Banks/economics ; Biological Specimen Banks/standards ; Biomedical Research/economics ; Biomedical Research/organization & administration ; Commerce ; Data Management/economics ; Data Management/methods ; Data Management/organization & administration ; Data Management/standards ; Databases, Factual/standards ; Health Information Management/economics ; Health Information Management/organization & administration ; Health Information Management/standards ; Humans ; Information Management/economics ; Information Management/methods ; Information Management/organization & administration ; Information Management/standards ; Organizational Innovation/economics ; Workflow
Periodyk
Tytuł :
Classification aware neural topic model for COVID-19 disinformation categorisation.
Autorzy :
Song X; Department of Computer Science, University of Sheffield, Sheffield, United Kingdom.
Petrak J; Department of Computer Science, University of Sheffield, Sheffield, United Kingdom.; Austrian Research Institute for Artificial Intelligence, Vienna, Austria.
Jiang Y; Department of Computer Science, University of Sheffield, Sheffield, United Kingdom.
Singh I; Department of Computer Science, University of Sheffield, Sheffield, United Kingdom.; Panjab University, Chandigarh, India.
Maynard D; Department of Computer Science, University of Sheffield, Sheffield, United Kingdom.
Bontcheva K; Department of Computer Science, University of Sheffield, Sheffield, United Kingdom.
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Źródło :
PloS one [PLoS One] 2021 Feb 18; Vol. 16 (2), pp. e0247086. Date of Electronic Publication: 2021 Feb 18 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
COVID-19*
Communication*
Neural Networks, Computer*
Classification/*methods
Data Curation
Czasopismo naukowe
Tytuł :
Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials.
Autorzy :
Saarimäki LA; Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.; BioMediTech Institute, Tampere University, Tampere, Finland.
Federico A; Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.; BioMediTech Institute, Tampere University, Tampere, Finland.
Lynch I; School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, B15 2TT, Birmingham, United Kingdom.
Papadiamantis AG; School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, B15 2TT, Birmingham, United Kingdom.; NovaMechanics Ltd, P.O Box 26014 1666, Nicosia, Cyprus.
Tsoumanis A; NovaMechanics Ltd, P.O Box 26014 1666, Nicosia, Cyprus.
Melagraki G; NovaMechanics Ltd, P.O Box 26014 1666, Nicosia, Cyprus.
Afantitis A; NovaMechanics Ltd, P.O Box 26014 1666, Nicosia, Cyprus.
Serra A; Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.; BioMediTech Institute, Tampere University, Tampere, Finland.
Greco D; Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland. .; BioMediTech Institute, Tampere University, Tampere, Finland. .; Institute of Biotechnology, University of Helsinki, Helsinki, Finland. .; Finnish Centre for Alternative Methods (FICAM), Faculty of Medicine and Heath Technology, Tampere University, Tampere, Finland. .
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Źródło :
Scientific data [Sci Data] 2021 Feb 08; Vol. 8 (1), pp. 49. Date of Electronic Publication: 2021 Feb 08.
Typ publikacji :
Dataset; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Toxicogenetics*
Transcriptome*
Nanostructures/*toxicity
Animals ; Data Collection ; Data Curation ; Humans ; Mice ; Rats
Czasopismo naukowe
Tytuł :
LncExpDB: an expression database of human long non-coding RNAs.
Autorzy :
Li Z; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100101, China.
Liu L; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100101, China.
Jiang S; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
Li Q; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100101, China.
Feng C; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100101, China.
Du Q; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100101, China.
Zou D; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
Xiao J; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100101, China.
Zhang Z; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; University of Chinese Academy of Sciences, Beijing 100101, China.
Ma L; China National Center for Bioinformation, Beijing 100101, China.; National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D962-D968.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Nucleic Acid*
Gene Expression Regulation*
Computational Biology/*methods
Gene Expression Profiling/*methods
RNA, Long Noncoding/*genetics
Data Curation/methods ; Data Mining/methods ; Humans ; Internet ; Molecular Sequence Annotation/methods
Czasopismo naukowe
Tytuł :
UniProt: the universal protein knowledgebase in 2021.
Corporate Authors :
UniProt Consortium
Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D480-D489.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Databases, Protein*
Knowledge Bases*
Computational Biology/*methods
Data Curation/*methods
Proteome/*metabolism
Proteomics/*methods
COVID-19/epidemiology ; COVID-19/prevention & control ; COVID-19/virology ; Humans ; Internet ; Molecular Sequence Annotation/methods ; Pandemics ; Proteome/genetics ; SARS-CoV-2/genetics ; SARS-CoV-2/metabolism ; SARS-CoV-2/physiology ; User-Computer Interface ; Viral Proteins/genetics ; Viral Proteins/metabolism
Czasopismo naukowe
Tytuł :
WikiPathways: connecting communities.
Autorzy :
Martens M; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.
Ammar A; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.
Riutta A; Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA 94158, USA.
Waagmeester A; Micelio, 2180, Antwerp, Belgium.
Slenter DN; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.
Hanspers K; Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA 94158, USA.
A Miller R; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.
Digles D; Department of Pharmaceutical Chemistry/Pharmacoinformatics Research Group, University of Vienna, 1090 Vienna, Austria.
Lopes EN; Instituto de Ciencias Biologicas, Departamento de Bioquimica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, 31270-901, Brazil.
Ehrhart F; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.
Dupuis LJ; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.
Winckers LA; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.
Coort SL; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.
Willighagen EL; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.
Evelo CT; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, 6229 EN Maastricht, the Netherlands.
Pico AR; Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA 94158, USA.
Kutmon M; Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, the Netherlands.; Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, 6229 EN Maastricht, the Netherlands.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D613-D621.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Factual*
COVID-19/pathology ; Data Curation ; Humans ; Publications ; User-Computer Interface
Czasopismo naukowe
Tytuł :
VIPERdb v3.0: a structure-based data analytics platform for viral capsids.
Autorzy :
Montiel-Garcia D; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.; Departments of Computer Systems and Information Technologies, Tecnologico Nacional de Mexico & Instituto Tecnológico Superior de Irapuato, Irapuato, Guanajuato, México.
Santoyo-Rivera N; Departments of Computer Systems and Information Technologies, Tecnologico Nacional de Mexico & Instituto Tecnológico Superior de Irapuato, Irapuato, Guanajuato, México.
Ho P; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Carrillo-Tripp M; Biomolecular Diversity Laboratory, Centro de Investigación y de Estudios Avanzados Unidad Monterrey, Vía del Conocimiento 201, Parque PIIT, C.P. 66600, Apodaca, Nuevo León, México.
Iii CLB; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.; Department of Chemistry, University of Michigan, Ann Arbor, MI, USA.; Department of Biophysics, University of Michigan, Ann Arbor, MI, USA.
Johnson JE; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Reddy VS; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Pokaż więcej
Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D809-D816.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Data Science*
Databases as Topic*
Capsid/*chemistry
Viruses/*chemistry
Data Curation ; Sequence Alignment
Czasopismo naukowe
Tytuł :
BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria.
Autorzy :
Wang J; Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia.
Li J; Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia.; Department of Clinical Laboratory, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China.; School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin 541004, China.
Hou Y; School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin 541004, China.
Dai W; Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia.; School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin 541004, China.
Xie R; School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin 541004, China.
Marquez-Lago TT; Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA.; Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA.
Leier A; Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA.; Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA.
Zhou T; Department of Clinical Laboratory, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Torres V; Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia.
Hay I; School of Biological Sciences, The University of Auckland, Auckland 1010, New Zealand.
Stubenrauch C; Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia.
Zhang Y; School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin 541004, China.
Song J; Monash Centre for Data Science, Faculty of Information Technology, Monash University, VIC 3800, Australia.; Infection and Immunity Program, Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, VIC 3800, Australia.; ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, VIC 3800, Australia.
Lithgow T; Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia.
Pokaż więcej
Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D651-D659.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases as Topic*
Gram-Negative Bacteria/*metabolism
Data Curation ; Molecular Sequence Annotation ; Substrate Specificity
Czasopismo naukowe

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