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Tytuł :
[Interest of the bc-GenExMiner web tool in oncology].
Autorzy :
Jézéquel P; Institut de cancérologie de l'Ouest, unité de bioinfomique, boulevard Jacques-Monod, 44805 Saint-Herblain cedex, France; Université de Nantes, université d'Angers, institut de recherche en santé-Université de Nantes, CRCINA, UMR 1232 Inserm, 8, quai Moncousu - BP 70721, 44007 Nantes cedex 1, France; SIRIC ILIAD, Nantes, Angers, France. Electronic address: .
Gouraud W; Institut de cancérologie de l'Ouest, unité de bioinfomique, boulevard Jacques-Monod, 44805 Saint-Herblain cedex, France; SIRIC ILIAD, Nantes, Angers, France.
Azzouz FB; Institut de cancérologie de l'Ouest, unité de bioinfomique, boulevard Jacques-Monod, 44805 Saint-Herblain cedex, France; SIRIC ILIAD, Nantes, Angers, France.
Basseville A; Institut de cancérologie de l'Ouest, unité de bioinfomique, boulevard Jacques-Monod, 44805 Saint-Herblain cedex, France.
Juin PP; Université de Nantes, université d'Angers, institut de recherche en santé-Université de Nantes, CRCINA, UMR 1232 Inserm, 8, quai Moncousu - BP 70721, 44007 Nantes cedex 1, France; SIRIC ILIAD, Nantes, Angers, France.
Lasla H; Institut de cancérologie de l'Ouest, unité de bioinfomique, boulevard Jacques-Monod, 44805 Saint-Herblain cedex, France; SIRIC ILIAD, Nantes, Angers, France.
Campone M; Université de Nantes, université d'Angers, institut de recherche en santé-Université de Nantes, CRCINA, UMR 1232 Inserm, 8, quai Moncousu - BP 70721, 44007 Nantes cedex 1, France; SIRIC ILIAD, Nantes, Angers, France; Institut de cancérologie de l'Ouest - René-Gauducheau, oncologie médicale, boulevard Jacques-Monod, 44805 Saint-Herblain cedex, France.
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Transliterated Title :
Intérêt de l’outil web bc-GenExMiner en oncologie.
Źródło :
Bulletin du cancer [Bull Cancer] 2021 Nov; Vol. 108 (11), pp. 1057-1064. Date of Electronic Publication: 2021 Sep 21.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Databases, Genetic*/statistics & numerical data
Breast Neoplasms/*genetics
Data Mining/*methods
Gene Expression Profiling/*methods
Breast Neoplasms/chemistry ; Female ; Genetic Markers ; Humans ; Internet-Based Intervention ; Prognosis ; Time Factors ; Transcriptome
Czasopismo naukowe
Tytuł :
OpenCYP: An open source database exploring human variability in activities and frequencies of polymophisms for major cytochrome P-450 isoforms across world populations.
Autorzy :
Vichi S; Istituto Superiore di Sanità, Environment & Health Department, Viale Regina Elena 299, Roma, Italy. Electronic address: .
Buratti FM; Istituto Superiore di Sanità, Environment & Health Department, Viale Regina Elena 299, Roma, Italy.
Di Consiglio E; Istituto Superiore di Sanità, Environment & Health Department, Viale Regina Elena 299, Roma, Italy.
Turco L; Istituto Superiore di Sanità, Environment & Health Department, Viale Regina Elena 299, Roma, Italy.
S Lautz L; Risk Assessment Department, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), 14 rue Pierre et Marie Curie, Maisons-Alfort, F-94701, France.
Darney K; Risk Assessment Department, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), 14 rue Pierre et Marie Curie, Maisons-Alfort, F-94701, France.
Dorne JCM; European Food Safety Authority, Via Carlo Magno 1A, 43126, Parma, Italy.
Testai E; Istituto Superiore di Sanità, Environment & Health Department, Viale Regina Elena 299, Roma, Italy.
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Źródło :
Toxicology letters [Toxicol Lett] 2021 Oct 10; Vol. 350, pp. 267-282. Date of Electronic Publication: 2021 Aug 02.
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Genetic*
Polymorphism, Genetic*
Cytochrome P-450 Enzyme System/*genetics
Cytochrome P-450 Enzyme System/*metabolism
Protein Isoforms/*genetics
Protein Isoforms/*metabolism
Adult ; Aged ; Aged, 80 and over ; Female ; Humans ; Male ; Middle Aged ; Population Surveillance ; Proteomics
Czasopismo naukowe
Tytuł :
Manual Annotation Studio (MAS): a collaborative platform for manual functional annotation of viral and microbial genomes.
Autorzy :
Lueder MR; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Cer RZ; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.
Patrick M; Mount St. Mary's University, Emmitsburg, MD, USA.
Voegtly LJ; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Long KA; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Rice GK; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Bishop-Lilly KA; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA. .
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Źródło :
BMC genomics [BMC Genomics] 2021 Oct 09; Vol. 22 (1), pp. 733. Date of Electronic Publication: 2021 Oct 09.
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Genetic*
Genome, Microbial*
Databases, Protein ; Genome, Viral ; Software
Czasopismo naukowe
Tytuł :
Effective gene expression prediction from sequence by integrating long-range interactions.
Autorzy :
Avsec Ž; DeepMind, London, UK. .
Agarwal V; Calico Life Sciences, South San Francisco, CA, USA.
Visentin D; DeepMind, London, UK.
Ledsam JR; DeepMind, London, UK.; Google, Tokyo, Japan.
Grabska-Barwinska A; DeepMind, London, UK.
Taylor KR; DeepMind, London, UK.
Assael Y; DeepMind, London, UK.
Jumper J; DeepMind, London, UK.
Kohli P; DeepMind, London, UK. .
Kelley DR; Calico Life Sciences, South San Francisco, CA, USA. .
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Źródło :
Nature methods [Nat Methods] 2021 Oct; Vol. 18 (10), pp. 1196-1203. Date of Electronic Publication: 2021 Oct 04.
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Genetic*
Epigenesis, Genetic*
Gene Expression Regulation*
Machine Learning*
Nerve Net*
DNA/*genetics
Animals ; Cell Line ; Genome ; Genomics/methods ; Humans ; Mice ; Quantitative Trait Loci
Czasopismo naukowe
Tytuł :
Pan-cancer analysis reveals that neurotrophin signaling correlates positively with anti-tumor immunity, clinical outcomes, and response to targeted therapies and immunotherapies in cancer.
Autorzy :
Feng Q; Biomedical Informatics Research Lab, School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 211198, China; Cancer Genomics Research Center, School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 211198, China; Big Data Research Institute, China Pharmaceutical University, Nanjing 211198, China.
Song D; Biomedical Informatics Research Lab, School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 211198, China; Cancer Genomics Research Center, School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 211198, China; Big Data Research Institute, China Pharmaceutical University, Nanjing 211198, China.
Wang X; Biomedical Informatics Research Lab, School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 211198, China; Cancer Genomics Research Center, School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing 211198, China; Big Data Research Institute, China Pharmaceutical University, Nanjing 211198, China. Electronic address: .
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Źródło :
Life sciences [Life Sci] 2021 Oct 01; Vol. 282, pp. 119848. Date of Electronic Publication: 2021 Jul 19.
Typ publikacji :
Journal Article
MeSH Terms :
Biomarkers, Tumor*/genetics
Biomarkers, Tumor*/immunology
Databases, Genetic*
Immunotherapy*
Neoplasm Proteins*/genetics
Neoplasm Proteins*/immunology
Neoplasms*/genetics
Neoplasms*/immunology
Neoplasms*/therapy
Nerve Growth Factors*/genetics
Nerve Growth Factors*/immunology
Signal Transduction*/genetics
Signal Transduction*/immunology
Humans
Czasopismo naukowe
Tytuł :
Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data.
Autorzy :
Zhao Y; School of Computer Science, McGill University, Montreal, QC, Canada.; Harvard-MIT Health Sciences and Technology, Cambridge, MA, USA.
Cai H; Department of Machine Intelligence, Peking University, Beijing, China.
Zhang Z; School of Computer Science, Fudan University, Shanghai, China.
Tang J; HEC Montreal, Montreal, QC, Canada. .
Li Y; School of Computer Science, McGill University, Montreal, QC, Canada. .
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Źródło :
Nature communications [Nat Commun] 2021 Sep 06; Vol. 12 (1), pp. 5261. Date of Electronic Publication: 2021 Sep 06.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Genetic*
Models, Genetic*
Sequence Analysis, RNA/*statistics & numerical data
Single-Cell Analysis/*methods
Alzheimer Disease/genetics ; Alzheimer Disease/pathology ; Animals ; Depressive Disorder, Major/genetics ; Depressive Disorder, Major/pathology ; Gene Expression Profiling/methods ; Gene Expression Profiling/statistics & numerical data ; Genes, Mitochondrial ; Humans ; Mice ; Neural Networks, Computer ; RNA, Small Cytoplasmic ; Retina/cytology ; Retina/physiology ; Sequence Analysis, RNA/methods
Czasopismo naukowe
Tytuł :
GutBalance: a server for the human gut microbiome-based disease prediction and biomarker discovery with compositionality addressed.
Autorzy :
Yang F; University of Electronic Science and Technology of China.
Zou Q; Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 610054, China.; Hainan Key Laboratory for Computational Science and Application, Hainan Normal University, Haikou 571158, China.
Gao B; Department of Radiology, The Second Affiliated Hospital, Harbin Medical University, Harbin 150001, China.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Genetic*
Metagenome*
Software*
Bacteria/*genetics
Disease/*genetics
Gastrointestinal Microbiome/*genetics
Bacteria/classification ; Biomarkers ; Humans ; Metagenomics
Czasopismo naukowe
Tytuł :
FifBase: a comprehensive fertility-associated indicators factor database for domestic animals.
Autorzy :
Li H; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Hou J; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Chen Z; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Zeng J; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Ni Y; College of Information Engineering, Northwest A&F University, Yangling, Shaanxi, China.
Li Y; College of Information Engineering, Northwest A&F University, Yangling, Shaanxi, China.
Xiao X; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Zhou Y; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Zhang N; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Long D; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Liu H; College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China.
Yang L; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Bai X; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Li Q; Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
Li T; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Che D; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Li L; Department of Bioinformatics and Biostatistics, SJTU Yale Joint Center Biostatistics, Shanghai Jiao Tong University, Shanghai, China.
Wang X; School of Life Sciences, Tsinghua University, Beijing, China.
Zhang P; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
Liao M; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Data Mining*
Databases, Genetic*
Fertility*
Molecular Sequence Annotation*
Software*
Animals, Domestic/*genetics
Animals
Czasopismo naukowe
Tytuł :
Machine learning application for patient stratification and phenotype/genotype investigation in a rare disease.
Autorzy :
Spiga O; Department of Biotechnology, Chemistry and Pharmacy, University of Siena, ITALY.
Cicaloni V; Toscana Life Sciences Foundation, Siena, ITALY.
Dimitri GM; Department of Computer Science, University of Cambridge, Cambridge, UK.; Department of Information Engineering and Mathematics, University of Siena, ITALY.
Pettini F; Department of Medical Biotechnology, University of Siena, ITALY.
Braconi D; Department of Biotechnology, Chemistry and Pharmacy, University of Siena, ITALY.
Bernini A; Department of Biotechnology, Chemistry and Pharmacy, University of Siena, ITALY.
Santucci A; Department of Biotechnology, Chemistry and Pharmacy, University of Siena, ITALY.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Genetic*
Genotype*
Machine Learning*
Patient Selection*
Precision Medicine*
Alkaptonuria/*genetics
Alkaptonuria/enzymology ; Female ; Homogentisate 1,2-Dioxygenase/genetics ; Humans ; Male ; Mutation ; Rare Diseases
Czasopismo naukowe
Tytuł :
CanDriS: posterior profiling of cancer-driving sites based on two-component evolutionary model.
Autorzy :
Zhao W; College of Pharmaceutical Sciences & College of Computer Science and Technology, Zhejiang University, China.
Yang J; MOE Key Laboratory of Contemporary Anthropology, Human Phenome Institute, School of Life Sciences, Fudan University, China.
Wu J; College of Pharmaceutical Sciences, Zhejiang University, China.
Cai G; College of Pharmaceutical Sciences, Zhejiang University, China.
Zhang Y; College of Pharmaceutical Sciences, Zhejiang University, China.
Haltom J; Department of Genetics, Development and Cell Biology, Iowa State University, Ames, 12 Iowa 50011, USA.
Su W; Department of Genetics, Development and Cell Biology, Iowa State University, Ames, 12 Iowa 50011, USA.
Dong MJ; Department of Genetics, Development and Cell Biology, Iowa State University, Ames, 12 Iowa 50011, USA.
Chen S; College of Pharmaceutical Sciences, Zhejiang University, China.
Wu J; College of Computer Science and Technology & School of Medicine, Zhejiang University, China.
Zhou Z; College of Pharmaceutical Sciences, Innovation Institute for Artificial Intelligence in Medicine, Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Zhejiang University, China.
Gu X; Department of Genetics, Development and Cell Biology, Iowa State University, Ames, 12 Iowa 50011, USA.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Algorithms*
Databases, Genetic*
Models, Genetic*
Mutation*
Computational Biology/*methods
Neoplasms/*genetics
Bayes Theorem ; Benchmarking/methods ; Genomics/methods ; Humans ; Internet ; User-Computer Interface
Czasopismo naukowe
Tytuł :
MicroRNA annotation in plants: current status and challenges.
Autorzy :
Zhao Y; Beijing Academy of Agriculture and Forestry Sciences, China.
Kuang Z; Peking University and Beijing Academy of Agriculture and Forestry Sciences, China.
Wang Y; Peking University, China.
Li L; School of Advanced Agricultural Sciences and School of Life Sciences at the Peking University, China.
Yang X; Beijing Academy of Agriculture and Forestry Sciences, China.
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Źródło :
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Databases, Genetic*
Computational Biology/*methods
MicroRNAs/*genetics
Plants/*genetics
RNA, Plant/*genetics
Artificial Intelligence ; Computational Biology/statistics & numerical data ; Gene Expression Profiling/methods ; Gene Expression Regulation, Plant ; Gene Regulatory Networks/genetics ; Molecular Sequence Annotation/methods ; Plants/classification
Czasopismo naukowe
Tytuł :
Rare variant contribution to human disease in 281,104 UK Biobank exomes.
Autorzy :
Wang Q; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Waltham, MA, USA.
Dhindsa RS; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Waltham, MA, USA.
Carss K; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Harper AR; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Nag A; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Tachmazidou I; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Vitsios D; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Deevi SVV; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Mackay A; Translational Science and Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Muthas D; Translational Science and Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Hühn M; Translational Science and Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Monkley S; Translational Science and Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Olsson H; Translational Science and Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Gothenburg, Sweden.
Wasilewski S; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Smith KR; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
March R; Precision Medicine & Biosamples, Oncology R&D, AstraZeneca, Cambridge, UK.
Platt A; Translational Science and Experimental Medicine, Research and Early Development, Respiratory and Immunology, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Haefliger C; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Petrovski S; Centre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK. .; Department of Medicine, University of Melbourne, Austin Health, Melbourne, Victoria, Australia. .; Epilepsy Research Centre, University of Melbourne, Austin Health, Melbourne, Victoria, Australia. .
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Corporate Authors :
AstraZeneca Genomics Initiative
Źródło :
Nature [Nature] 2021 Sep; Vol. 597 (7877), pp. 527-532. Date of Electronic Publication: 2021 Aug 10.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biological Specimen Banks*
Databases, Genetic*
Disease/*genetics
Exome/*genetics
Genetic Variation/*genetics
Adult ; Aged ; Female ; Genome-Wide Association Study ; Humans ; Male ; Middle Aged ; Phenotype ; Proteins/chemistry ; Proteins/genetics ; United Kingdom ; Whole Exome Sequencing
Czasopismo naukowe
Tytuł :
An overview of germline variations in genes of primary immunodeficiences through integrative analysis of ClinVar, HGMD and dbSNP databases.
Autorzy :
Salnikova LE; The Laboratory of Ecological Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, 3 Gubkin Street, Moscow, 117971, Russia. .; The Laboratory of Molecular Immunology, Rogachev National Research Center of Pediatric Hematology, Oncology and Immunology, Moscow, Russia. .; The Laboratory of Clinical Pathophysiology of Critical Conditions, Federal Research and Clinical Center of Intensive Care Medicine and Rehabilitology, Moscow, Russia. .
Kolobkov DS; The Laboratory of Ecological Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, 3 Gubkin Street, Moscow, 117971, Russia.; Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.; Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.
Sviridova DA; The Laboratory of Ecological Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, 3 Gubkin Street, Moscow, 117971, Russia.
Abilev SK; The Laboratory of Ecological Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, 3 Gubkin Street, Moscow, 117971, Russia.
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Źródło :
Human genetics [Hum Genet] 2021 Sep; Vol. 140 (9), pp. 1379-1393. Date of Electronic Publication: 2021 Jul 16.
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Genetic*
Genetic Predisposition to Disease*
Polymorphism, Single Nucleotide*
Primary Immunodeficiency Diseases/*genetics
Female ; Humans ; Male
Czasopismo naukowe
Tytuł :
WheatQTLdb: a QTL database for wheat.
Autorzy :
Singh K; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Batra R; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Sharma S; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Saripalli G; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Gautam T; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Singh R; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Pal S; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Malik P; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Kumar M; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Jan I; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Singh S; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Kumar D; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Pundir S; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Chaturvedi D; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Verma A; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Rani A; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Kumar A; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Sharma H; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Chaudhary J; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Kumar K; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Kumar S; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Singh VK; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Singh VP; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Kumar S; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Kumar R; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Gaurav SS; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Sharma S; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Sharma PK; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Balyan HS; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
Gupta PK; Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India. .
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Źródło :
Molecular genetics and genomics : MGG [Mol Genet Genomics] 2021 Sep; Vol. 296 (5), pp. 1051-1056. Date of Electronic Publication: 2021 Jun 11.
Typ publikacji :
Journal Article
MeSH Terms :
Databases, Genetic*
Quantitative Trait Loci*
Triticum/*genetics
Epistasis, Genetic ; Internet ; User-Computer Interface
Czasopismo naukowe
Tytuł :
A compendium of uniformly processed human gene expression and splicing quantitative trait loci.
Autorzy :
Kerimov N; Institute of Computer Science, University of Tartu, Tartu, Estonia.; Open Targets, Wellcome Genome Campus, Cambridge, UK.
Hayhurst JD; Open Targets, Wellcome Genome Campus, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Peikova K; Institute of Computer Science, University of Tartu, Tartu, Estonia.
Manning JR; Open Targets, Wellcome Genome Campus, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Walter P; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Kolberg L; Institute of Computer Science, University of Tartu, Tartu, Estonia.
Samoviča M; Institute of Computer Science, University of Tartu, Tartu, Estonia.
Sakthivel MP; Open Targets, Wellcome Genome Campus, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Kuzmin I; Institute of Computer Science, University of Tartu, Tartu, Estonia.
Trevanion SJ; Open Targets, Wellcome Genome Campus, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Burdett T; Open Targets, Wellcome Genome Campus, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Jupp S; Open Targets, Wellcome Genome Campus, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Parkinson H; Open Targets, Wellcome Genome Campus, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Papatheodorou I; Open Targets, Wellcome Genome Campus, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Yates AD; Open Targets, Wellcome Genome Campus, Cambridge, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.
Zerbino DR; Open Targets, Wellcome Genome Campus, Cambridge, UK. .; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK. .
Alasoo K; Institute of Computer Science, University of Tartu, Tartu, Estonia. .; Open Targets, Wellcome Genome Campus, Cambridge, UK. .
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Źródło :
Nature genetics [Nat Genet] 2021 Sep; Vol. 53 (9), pp. 1290-1299. Date of Electronic Publication: 2021 Sep 06.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Genetic*
Quantitative Trait, Heritable*
Gene Expression Regulation/*genetics
Quantitative Trait Loci/*genetics
CD4-Positive T-Lymphocytes/cytology ; Datasets as Topic ; Genome-Wide Association Study ; Humans ; Multifactorial Inheritance/genetics ; Polymorphism, Single Nucleotide/genetics
Czasopismo naukowe
Tytuł :
Developing a new genic SSR primer database in faba bean (Vicia faba L.).
Autorzy :
Khalifa KA; Agricultural Genetic Engineering Research Institute, PO Box 12619, Giza, Egypt.
Ibrahim SD; Agricultural Genetic Engineering Research Institute, PO Box 12619, Giza, Egypt.
El-Garhy HAS; Department of Genetics and Genetic Engineering, Faculty of Agricultural, Benha University, Benha, Egypt.
Moustafa MMM; Department of Genetics and Genetic Engineering, Faculty of Agricultural, Benha University, Benha, Egypt.
Maalouf F; International Center for Agricultural Research in the Dry Areas (ICARDA) , Terbol, Lebanon.
Alsamman AM; Agricultural Genetic Engineering Research Institute, PO Box 12619, Giza, Egypt.
Hamwieh A; International Center for Agricultural Research in the Dry Areas (ICARDA), PO Box 2416, Cairo, Egypt.
El Allali A; African Genome Center, Mohammed VI Polytechnic University, Ben Guerir, Morocco. .
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Źródło :
Journal of applied genetics [J Appl Genet] 2021 Sep; Vol. 62 (3), pp. 373-387. Date of Electronic Publication: 2021 Mar 23.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Primers*
Databases, Genetic*
Microsatellite Repeats*
Vicia faba*/genetics
Expressed Sequence Tags ; Genotype ; Polymorphism, Genetic
Czasopismo naukowe
Tytuł :
Global Single Clustering of Phenotype-Associated Human Aging Genes in the Co-Expression and Physical Interaction Networks: An OMIM-Based Investigative Review.
Autorzy :
M R; Department of Microbiology, Karaj branch, Islamic Azad University, Karaj, Iran.
M A; Chemical Injuries Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran. Electronic address: .
H B; Chemical Injuries Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran; Institute of Biochemistry and Biophysics, Tehran University, Tehran, Iran.
M O; Iranian Research Center on Aging, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran. Electronic address: .
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Źródło :
Archives of gerontology and geriatrics [Arch Gerontol Geriatr] 2021 Sep-Oct; Vol. 96, pp. 104461. Date of Electronic Publication: 2021 Jun 15.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Aging*/genetics
Databases, Genetic*
Cluster Analysis ; Humans ; Phenotype
Czasopismo naukowe
Tytuł :
AVIA 3.0: interactive portal for genomic variant and sample level analysis.
Autorzy :
Reardon HV; Advanced Biomedical Computational Science, Biomedical Informatics & Data Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA.
Che A; Advanced Biomedical Computational Science, Biomedical Informatics & Data Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA.
Luke BT; Advanced Biomedical Computational Science, Biomedical Informatics & Data Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA.
Ravichandran S; Advanced Biomedical Computational Science, Biomedical Informatics & Data Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA.
Collins JR; Advanced Biomedical Computational Science, Biomedical Informatics & Data Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA.
Mudunuri US; Advanced Biomedical Computational Science, Biomedical Informatics & Data Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2021 Aug 25; Vol. 37 (16), pp. 2467-2469.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Databases, Genetic*
Genetic Variation*
Data Management ; Genome ; Genomics ; Humans ; Internet ; Software
Czasopismo naukowe
Tytuł :
The Breeding Information Management System (BIMS): an online resource for crop breeding.
Autorzy :
Jung S; Department of Horticulture, Washington State University, 45 Johnson Hall, Pullman, WA 99164, USA.
Lee T; Department of Horticulture, Washington State University, 45 Johnson Hall, Pullman, WA 99164, USA.
Gasic K; Plant and Environmental Sciences Department, 171 Poole Agricultural Center, Clemson University, Clemson, SC 29634, USA.
Campbell BT; Coastal Plains Soil, Water, and Plant Research Center, USDA-ARS, 2611 West Lucas St., Florence, SC 29501-1242, USA.
Yu J; Department of Horticulture, Washington State University, 45 Johnson Hall, Pullman, WA 99164, USA.
Humann J; Department of Horticulture, Washington State University, 45 Johnson Hall, Pullman, WA 99164, USA.
Ru S; Department of Horticulture, University of Auburn, 287 CASIC Building/120 Funchess, Auburn, AL 36849, USA.
Edge-Garza D; Centre for Horticultural Science, The University of Queensland, Brisbane St Lucia, Brisbane, QLD 4072, Australia.
Hough H; Department of Horticulture, Washington State University, 45 Johnson Hall, Pullman, WA 99164, USA.
Main D; Department of Horticulture, Washington State University, 45 Johnson Hall, Pullman, WA 99164, USA.
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Źródło :
Database : the journal of biological databases and curation [Database (Oxford)] 2021 Aug 20; Vol. 2021.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Databases, Genetic*
Plant Breeding*
Genomics ; Information Management ; Software
Czasopismo naukowe
Tytuł :
PhenoDB, GeneMatcher and VariantMatcher, tools for analysis and sharing of sequence data.
Autorzy :
Wohler E; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Martin R; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Griffith S; Center for Inherited Disease Research - CIDR, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Rodrigues EDS; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Antonescu C; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Posey JE; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Coban-Akdemir Z; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Jhangiani SN; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Doheny KF; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Center for Inherited Disease Research - CIDR, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Lupski JR; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.; Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.; Texas Children's Hospital, Houston, TX, USA.
Valle D; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Hamosh A; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Sobreira N; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA. .
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Źródło :
Orphanet journal of rare diseases [Orphanet J Rare Dis] 2021 Aug 18; Vol. 16 (1), pp. 365. Date of Electronic Publication: 2021 Aug 18.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Databases, Genetic*
Genomics*
Computational Biology ; Humans ; Phenotype ; Software
Czasopismo naukowe

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