Temat: "Databases, Genetic" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: COSMIC-based mutation database enhances identification efficiency of HLA-I immunopeptidome.
Autorzy:: Wang F; Medical School of Chinese People's Liberation Army (PLA), Faculty of Hepato-Pancreato-Biliary Surgery, Chinese PLA General Hospital, Institute of Hepatobiliary Surgery of Chinese PLA, Key Laboratory of Digital Hepatobiliary Surgery PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China.
Zhang Z; State Key Laboratory of Proteomics, National Center for Protein Sciences (Beijing), Research Unit of Proteomics and Research and Development of New Drug of Chinese Academy of Medical Sciences, Beijing Proteome Research Center, Institute of Lifeomics, 38 Life Science Park Road, Changping District, Beijing, 102206, China.
Mao M; State Key Laboratory of Proteomics, National Center for Protein Sciences (Beijing), Research Unit of Proteomics and Research and Development of New Drug of Chinese Academy of Medical Sciences, Beijing Proteome Research Center, Institute of Lifeomics, 38 Life Science Park Road, Changping District, Beijing, 102206, China.; School of Basic Medical Sciences, Anhui Medical University, Hefei, China.
Yang Y; State Key Laboratory of Proteomics, National Center for Protein Sciences (Beijing), Research Unit of Proteomics and Research and Development of New Drug of Chinese Academy of Medical Sciences, Beijing Proteome Research Center, Institute of Lifeomics, 38 Life Science Park Road, Changping District, Beijing, 102206, China.; Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.
Xu P; State Key Laboratory of Proteomics, National Center for Protein Sciences (Beijing), Research Unit of Proteomics and Research and Development of New Drug of Chinese Academy of Medical Sciences, Beijing Proteome Research Center, Institute of Lifeomics, 38 Life Science Park Road, Changping District, Beijing, 102206, China. .; School of Basic Medical Sciences, Anhui Medical University, Hefei, China. .; Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China. .; School of Medicine, Guizhou University, Guiyang, China. .
Lu S; Medical School of Chinese People's Liberation Army (PLA), Faculty of Hepato-Pancreato-Biliary Surgery, Chinese PLA General Hospital, Institute of Hepatobiliary Surgery of Chinese PLA, Key Laboratory of Digital Hepatobiliary Surgery PLA, 28 Fuxing Road, Haidian District, Beijing, 100853, China. lusc_.; Pokaż więcej
Źródło:: Journal of translational medicine [J Transl Med] 2024 Feb 10; Vol. 22 (1), pp. 144. Date of Electronic Publication: 2024 Feb 10.
Typ publikacji:: Journal Article
MeSH Terms:: Antigens, Neoplasm*/metabolism
Histocompatibility Antigens Class I*/genetics
Histocompatibility Antigens Class I*/metabolism
T-Lymphocytes*
Databases, Genetic*
Humans ; Mutation/genetics ; Peptides/chemistry

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Skocz do pozycji: 2.

Tytuł:: Star allele search: a pharmacogenetic annotation database and user-friendly search tool of publicly available 1000 Genomes Project biospecimens.
Autorzy:: Gharani N; Coriell Institute for Medical Research, 403 Haddon Ave, Camden, NJ, 08103, USA.; Gharani Consulting Limited, 272 Regents Park Road, London, N3 3HN, UK.
Calendo G; Coriell Institute for Medical Research, 403 Haddon Ave, Camden, NJ, 08103, USA.
Kusic D; Coriell Institute for Medical Research, 403 Haddon Ave, Camden, NJ, 08103, USA.
Madzo J; Coriell Institute for Medical Research, 403 Haddon Ave, Camden, NJ, 08103, USA.; Cooper Medical School of Rowan University, 401 South Broadway, Camden, NJ, 08103, USA.
Scheinfeldt L; Coriell Institute for Medical Research, 403 Haddon Ave, Camden, NJ, 08103, USA. .; Cooper Medical School of Rowan University, 401 South Broadway, Camden, NJ, 08103, USA. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2024 Jan 26; Vol. 25 (1), pp. 116. Date of Electronic Publication: 2024 Jan 26.
Typ publikacji:: Journal Article
MeSH Terms:: Pharmacogenetics*
Databases, Genetic*
Alleles ; Haplotypes

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Skocz do pozycji: 3.

Tytuł:: Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species.
Autorzy:: Ichihara H; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Yamada M; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Kohara M; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Hirakawa H; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Ghelfi A; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.; Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.
Tamura T; Research and Development Center for Precision Medicine, University of Tsukuba, Tsukuba, Ibaraki, 305-8550, Japan.
Nakaya A; Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, 277-0882, Japan.
Nakamura Y; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.; Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.
Shirasawa S; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Yamashita S; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Toda Y; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Harada D; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.; Present Address: Chitose Bio Evolution Pte. Ltd. Kawasaki, Kanagawa, 213-0012, Japan.
Fujishiro T; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Komaki A; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Fawcett JA; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.; Present Address: RIKEN iTHEMS, Wako, Saitama, 351-0198, Japan.
Sugihara E; Research and Development Center for Precision Medicine, University of Tsukuba, Tsukuba, Ibaraki, 305-8550, Japan.; Present Address: Division of Gene Regulation, Fujita Cancer Center, Research Promotion Headquarters, Fujita Health University School of Medicine, Toyoake, Aichi, 470-1192, Japan.
Tabata S; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan.
Isobe SN; Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0813, Japan. .; Pokaż więcej
Źródło:: BMC plant biology [BMC Plant Biol] 2023 Aug 12; Vol. 23 (1), pp. 391. Date of Electronic Publication: 2023 Aug 12.
Typ publikacji:: Journal Article
MeSH Terms:: Databases, Genetic*
Genomics*
Genetic Markers ; Genome, Plant/genetics ; Quantitative Trait Loci

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Skocz do pozycji: 4.

Tytuł:: ClinVar and HGMD genomic variant classification accuracy has improved over time, as measured by implied disease burden.
Autorzy:: Sharo AG; Biophysics Graduate Group, University of California, Berkeley, CA, 94720, USA. .; Center for Computational Biology, University of California, Berkeley, CA, 94720, USA. .; Department of Ecology and Evolutionary Biology, University of California, 124 Biomed Building, 1156 High St., Santa Cruz, CA, 95064, USA. .
Zou Y; Center for Computational Biology, University of California, Berkeley, CA, 94720, USA.; Department of Plant and Microbial Biology, University of California, 461 Koshland Hall, Berkeley, CA, 94720, USA.; Currently at: Department of Clinical Research, Yikon Genomics Company, Ltd., Shanghai, China.
Adhikari AN; Center for Computational Biology, University of California, Berkeley, CA, 94720, USA.; Department of Plant and Microbial Biology, University of California, 461 Koshland Hall, Berkeley, CA, 94720, USA.; Currently at: Illumina, Foster City, CA, 94404, USA.
Brenner SE; Biophysics Graduate Group, University of California, Berkeley, CA, 94720, USA. .; Center for Computational Biology, University of California, Berkeley, CA, 94720, USA. .; Department of Plant and Microbial Biology, University of California, 461 Koshland Hall, Berkeley, CA, 94720, USA. .; Pokaż więcej
Źródło:: Genome medicine [Genome Med] 2023 Jul 13; Vol. 15 (1), pp. 51. Date of Electronic Publication: 2023 Jul 13.
Typ publikacji:: Journal Article
MeSH Terms:: Genetic Variation*
Databases, Genetic*
Gene Frequency ; Genotype ; Genomics

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Skocz do pozycji: 5.

Tytuł:: Genome-wide association studies highlight novel risk loci for septal defects and left-sided congenital heart defects.
Autorzy:: Broberg M; Stem Cells and Metabolism Research Program, Faculty of Medicine, University of Helsinki, 00014, Helsinki, Finland.; Institute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, 00014, Helsinki, Finland.
Ampuja M; Stem Cells and Metabolism Research Program, Faculty of Medicine, University of Helsinki, 00014, Helsinki, Finland.
Jones S; Institute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, 00014, Helsinki, Finland.
Ojala T; Department of Pediatric Cardiology, New Children's Hospital, Pediatric Research Center, Helsinki University Hospital, 00029, Helsinki, Finland.
Rahkonen O; Department of Pediatric Cardiology, New Children's Hospital, Pediatric Research Center, Helsinki University Hospital, 00029, Helsinki, Finland.
Kivelä R; Stem Cells and Metabolism Research Program, Faculty of Medicine, University of Helsinki, 00014, Helsinki, Finland.; Wihuri Research Institute, 00290, Helsinki, Finland.; Faculty of Sport and Health Sciences, University of Jyväskylä, 40014, Jyväskylä, Finland.
Priest J; School of Medicine, Stanford University, Stanford University, Stanford, CA, 94305, USA.
Palotie A; Institute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, 00014, Helsinki, Finland.
Ollila HM; Institute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, 00014, Helsinki, Finland.; Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA.; Program in Medical and Population Genetics, Broad Institute, Cambridge, MA, 02142, USA.; Department of Anesthesia, Critical Care and Pain Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA.
Helle E; Stem Cells and Metabolism Research Program, Faculty of Medicine, University of Helsinki, 00014, Helsinki, Finland. .; Department of Pediatric Cardiology, New Children's Hospital, Pediatric Research Center, Helsinki University Hospital, 00029, Helsinki, Finland. .; Haartmaninkatu 8, Helsinki, 00014, Finland. .; Population Health Unit, Finnish Institute for Health and Welfare, Helsinki, 00271, Finland. .; Pokaż więcej
Corporate Authors:: FinnGen
Źródło:: BMC genomics [BMC Genomics] 2024 Mar 07; Vol. 25 (1), pp. 256. Date of Electronic Publication: 2024 Mar 07.
Typ publikacji:: Meta-Analysis; Journal Article
MeSH Terms:: Genome-Wide Association Study*
Heart Defects, Congenital*/genetics
Humans ; Infant, Newborn ; Genetic Predisposition to Disease ; Risk Factors ; Databases, Genetic

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Skocz do pozycji: 6.

Tytuł:: GPAD: a natural language processing-based application to extract the gene-disease association discovery information from OMIM.
Autorzy:: Rahit KMTH; Departments of Biochemistry, Molecular Biology and Medical Genetics, Cumming School of Medicine, University of Calgary, Calgary, AB, T2N 4N1, Canada.; Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, T2N 4N1, Canada.
Avramovic V; Departments of Biochemistry, Molecular Biology and Medical Genetics, Cumming School of Medicine, University of Calgary, Calgary, AB, T2N 4N1, Canada.; Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, T2N 4N1, Canada.
Chong JX; Division of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA, 98195, USA.; Brotman-Baty Institute, Seattle, WA, 98195, USA.
Tarailo-Graovac M; Departments of Biochemistry, Molecular Biology and Medical Genetics, Cumming School of Medicine, University of Calgary, Calgary, AB, T2N 4N1, Canada. .; Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, T2N 4N1, Canada. .; Pokaż więcej
Źródło:: BMC bioinformatics [BMC Bioinformatics] 2024 Feb 27; Vol. 25 (1), pp. 84. Date of Electronic Publication: 2024 Feb 27.
Typ publikacji:: Journal Article
MeSH Terms:: Natural Language Processing*
Zebrafish*
Humans ; Animals ; Phenotype ; Databases, Genetic ; Forecasting

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Skocz do pozycji: 7.

Tytuł:: Passionfruit Genomic Database (PGD): a comprehensive resource for passionfruit genomics.
Autorzy:: Yu C; MARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River (Co-Construction By Ministry and Province), Yangtze University, Jingzhou, 434025, China.
Wang P; MARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River (Co-Construction By Ministry and Province), Yangtze University, Jingzhou, 434025, China.
Zhang S; Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Liu J; Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Cheng Y; Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Zhang S; MARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River (Co-Construction By Ministry and Province), Yangtze University, Jingzhou, 434025, China. .
Wu Z; Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2024 Feb 08; Vol. 25 (1), pp. 157. Date of Electronic Publication: 2024 Feb 08.
Typ publikacji:: Journal Article
MeSH Terms:: Passiflora*/genetics
Preimplantation Diagnosis*
Female ; Pregnancy ; Humans ; Genomics ; Genome ; Sequence Analysis ; Databases, Genetic

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Skocz do pozycji: 8.

Tytuł:: Omic horizon expression: a database of gene expression based on RNA sequencing data.
Autorzy:: Hu Y; Department of Immunology, NHC Key Laboratory of Medical Immunology (Peking University), School of Basic Medical Sciences, Peking University Health Science Center, No. 38 Xueyuan Road, Beijing, 100191, China.; Peking University Center for Human Disease Genomics, No. 38 Xueyuan Road, Beijing, 100191, China.
Xie D; School of Basic Medical Sciences, Peking University Health Science Center, No. 38 Xueyuan Road, Beijing, 100191, China.
Li X; Department of Immunology, NHC Key Laboratory of Medical Immunology (Peking University), School of Basic Medical Sciences, Peking University Health Science Center, No. 38 Xueyuan Road, Beijing, 100191, China.; Peking University Center for Human Disease Genomics, No. 38 Xueyuan Road, Beijing, 100191, China.
Han W; Department of Immunology, NHC Key Laboratory of Medical Immunology (Peking University), School of Basic Medical Sciences, Peking University Health Science Center, No. 38 Xueyuan Road, Beijing, 100191, China.; Peking University Center for Human Disease Genomics, No. 38 Xueyuan Road, Beijing, 100191, China.
Chen Y; Department of Immunology, NHC Key Laboratory of Medical Immunology (Peking University), School of Basic Medical Sciences, Peking University Health Science Center, No. 38 Xueyuan Road, Beijing, 100191, China.; Peking University Center for Human Disease Genomics, No. 38 Xueyuan Road, Beijing, 100191, China.
Qi H; Department of Health informatics and Management, School of Health Humanities, Peking University Health Science Center, No. 38 Xueyuan Road, Beijing, 100191, China. .
Wang P; Department of Immunology, NHC Key Laboratory of Medical Immunology (Peking University), School of Basic Medical Sciences, Peking University Health Science Center, No. 38 Xueyuan Road, Beijing, 100191, China. .; Peking University Center for Human Disease Genomics, No. 38 Xueyuan Road, Beijing, 100191, China. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2023 Nov 08; Vol. 24 (1), pp. 674. Date of Electronic Publication: 2023 Nov 08.
Typ publikacji:: Journal Article
MeSH Terms:: RNA*
Transcriptome*
Humans ; Mice ; Rats ; Animals ; Databases, Factual ; Sequence Analysis, RNA ; Genome ; Gene Expression Profiling ; Databases, Genetic

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Skocz do pozycji: 9.

Tytuł:: CMIC: predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers.
Autorzy:: Maruyama O; Faculty of Design, Kyushu University, Fukuoka, Japan. .
Li Y; Graduate School of Design, Kyushu University, Fukuoka, Japan.
Narita H; School of Design, Kyushu University, Fukuoka, Japan.
Toh H; Division of Epigenomics and Development, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Au Yeung WK; Division of Epigenomics and Development, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan. .
Sasaki H; Division of Epigenomics and Development, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan. .; Pokaż więcej
Źródło:: BMC bioinformatics [BMC Bioinformatics] 2022 Sep 12; Vol. 23 (1), pp. 371. Date of Electronic Publication: 2022 Sep 12.
Typ publikacji:: Journal Article
MeSH Terms:: DNA Methylation*
Databases, Genetic*
Animals ; Carbazoles ; CpG Islands ; Inheritance Patterns ; Mammals/genetics ; Mice

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Skocz do pozycji: 10.

Tytuł:: Beyond gene-disease validity: capturing structured data on inheritance, allelic requirement, disease-relevant variant classes, and disease mechanism for inherited cardiac conditions.
Autorzy:: Josephs KS; National Heart and Lung Institute, Imperial College London, Du Cane Road, London, W12 0NN, UK.; Royal Brompton and Harefield Hospitals, Guy's and St Thomas' NHS Foundation Trust, London, UK.
Roberts AM; National Heart and Lung Institute, Imperial College London, Du Cane Road, London, W12 0NN, UK.; Great Ormond Street Hospital, NHS Foundation Trust, London, UK.
Theotokis P; National Heart and Lung Institute, Imperial College London, Du Cane Road, London, W12 0NN, UK.
Walsh R; Amsterdam University Medical Centre, University of Amsterdam, Heart Center, Department of Experimental Cardiology, Amsterdam Cardiovascular Sciences, Amsterdam, The Netherlands.
Ostrowski PJ; Great Ormond Street Hospital, NHS Foundation Trust, London, UK.
Edwards M; Clinical Genetics & Genomics Lab, Royal Brompton and Harefield Hospitals, Guy's and St Thomas' NHS Foundation Trust, London, UK.
Fleming A; Clinical Genetics & Genomics Lab, Royal Brompton and Harefield Hospitals, Guy's and St Thomas' NHS Foundation Trust, London, UK.
Thaxton C; Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Roberts JD; Population Health Research Institute, McMaster University, and Hamilton Health Sciences, Hamilton, Ontario, Canada.
Care M; Department of Molecular Genetics, University of Toronto, Toronto, Canada.; Division of Cardiology, Toronto General Hospital, Toronto, Canada.
Zareba W; Clinical Cardiovascular Research Center, University of Rochester, Rochester, NY, USA.
Adler A; Division of Cardiology, Peter Munk Cardiac Centre, University Health Network and Department of Medicine, University of Toronto, Toronto, Ontario, Canada.
Sturm AC; 23andMe, Genomic Health, Sunnyvale, CA, USA.
Tadros R; Cardiovascular Genetics Center, Montreal Heart Institute, and Faculty of Medicine, Université de Montréal, Montreal, Canada.
Novelli V; Unit of Immunology and Functional Genomics, Centro Cardiologico Monzino IRCCS, Milano, Italy.
Owens E; Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Bronicki L; Department of Pathology and Laboratory Medicine, University of Ottawa, Ottawa, Ontario, Canada.; Department of Genetics, CHEO, Ottawa, Ontario, Canada.
Jarinova O; Department of Pathology and Laboratory Medicine, University of Ottawa, Ottawa, Ontario, Canada.; Department of Genetics, CHEO, Ottawa, Ontario, Canada.
Callewaert B; Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium.; Department of Biomolecular Medicine, Ghent University, Ghent, Belgium.
Peters S; Department of Cardiology and Genomic Medicine, Royal Melbourne Hospital, Melbourne, Australia.; University of Melbourne, Melbourne, Australia.
Lumbers T; Barts Health & University College London Hospitals NHS Trusts, London, UK.; Institute of Health Informatics, University College London, London, UK.
Jordan E; Divisions of Human Genetics and Cardiovascular Medicine, The Ohio State University, Columbus, OH, USA.
Asatryan B; Department of Cardiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.; Division of Cardiology, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Krishnan N; Centre for Population Genomics, Garvan Institute of Medical Research, and UNSW Sydney, Sydney, Australia.
Hershberger RE; Divisions of Human Genetics and Cardiovascular Medicine, The Ohio State University, Columbus, OH, USA.
Chahal CAA; Center for Inherited Cardiovascular Diseases, WellSpan Health, Lancaster, PA, USA.; Cardiac Electrophysiology and Inherited Cardiovascular Diseases, Cardiovascular Division, Hospital of the University of Pennsylvania, Philadelphia, PA, USA.; Department of Cardiovascular Medicine, Mayo Clinic, Rochester, MN, USA.; Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, London, UK.
Landstrom AP; Department of Pediatrics and Cell Biology, Duke University School of Medicine, Durham, NC, USA.
James C; Johns Hopkins Center for Inherited Heart Diseases, Department of Medicine, Johns Hopkins University, Baltimore, MD, USA.
McNally EM; Center for Genetic Medicine, Dept of Medicine (Cardiology), Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Judge DP; Medical University of South Carolina, Charleston, SC, USA.
van Tintelen P; Department of Genetics, University Medical Center Utrecht, Utrecht, the Netherlands.
Wilde A; Department of Cardiology, Amsterdam UMC location University of Amsterdam, Meibergdreef 9, Amsterdam, the Netherlands.; Amsterdam Cardiovascular Sciences, Heart Failure and Arrhythmias, Amsterdam UMC location University of Amsterdam, Amsterdam, the Netherlands.
Gollob M; Inherited Arrhythmia and Cardiomyopathy Program, Division of Cardiology, University of Toronto, Toronto, ON, Canada.
Ingles J; Centre for Population Genomics, Garvan Institute of Medical Research, and UNSW Sydney, Sydney, Australia.
Ware JS; National Heart and Lung Institute, Imperial College London, Du Cane Road, London, W12 0NN, UK. .; Royal Brompton and Harefield Hospitals, Guy's and St Thomas' NHS Foundation Trust, London, UK. .; MRC London Institute of Medical Sciences, Imperial College London, London, UK. .; Pokaż więcej
Źródło:: Genome medicine [Genome Med] 2023 Oct 23; Vol. 15 (1), pp. 86. Date of Electronic Publication: 2023 Oct 23.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:: Genetic Testing*
Genetic Variation*
Humans ; Databases, Genetic ; Genomics ; Inheritance Patterns

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Skocz do pozycji: 11.

Tytuł:: miRDM-rfGA: Genetic algorithm-based identification of a miRNA set for detecting type 2 diabetes.
Autorzy:: Park A; Department of Health Sciences and Technology, Gachon Advanced Institute for Health Sciences and Technology (GAIHST), Gachon University, Incheon, 21999, Korea.
Nam S; Department of Health Sciences and Technology, Gachon Advanced Institute for Health Sciences and Technology (GAIHST), Gachon University, Incheon, 21999, Korea. .; Department of Genome Medicine and Science, AI Convergence Center for Medical Science, Gachon University Gil Medical Center, Gachon University College of Medicine, Incheon, 21565, Korea. .; Pokaż więcej
Źródło:: BMC medical genomics [BMC Med Genomics] 2023 Aug 22; Vol. 16 (1), pp. 195. Date of Electronic Publication: 2023 Aug 22.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Diabetes Mellitus, Type 2*/diagnosis
Diabetes Mellitus, Type 2*/genetics
Random Forest*
MicroRNAs/genetics ; Animals ; Mice ; Databases, Genetic ; Genetic Markers ; Humans

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Skocz do pozycji: 12.

Tytuł:: VariantscanR: an R-package as a clinical tool for variant filtering of known phenotype-associated variants in domestic animals.
Autorzy:: Boeykens F; Laboratory of Animal Genetics, Department of Veterinary and Biosciences, Faculty of Veterinary Medicine, Ghent University, Heidestraat 19, 9820, Merelbeke, Belgium. .
Bhatti SFM; Small Animal Department, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, 9820, Merelbeke, Belgium.
Peelman L; Laboratory of Animal Genetics, Department of Veterinary and Biosciences, Faculty of Veterinary Medicine, Ghent University, Heidestraat 19, 9820, Merelbeke, Belgium.
Broeckx BJG; Laboratory of Animal Genetics, Department of Veterinary and Biosciences, Faculty of Veterinary Medicine, Ghent University, Heidestraat 19, 9820, Merelbeke, Belgium. .; Pokaż więcej
Źródło:: BMC bioinformatics [BMC Bioinformatics] 2023 Aug 01; Vol. 24 (1), pp. 305. Date of Electronic Publication: 2023 Aug 01.
Typ publikacji:: Journal Article
MeSH Terms:: Software*
Animals, Domestic*/genetics
Humans ; Animals ; Dogs ; Whole Genome Sequencing/methods ; Phenotype ; Databases, Genetic ; High-Throughput Nucleotide Sequencing

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Skocz do pozycji: 13.

Tytuł:: Network pharmacology prediction and molecular docking-based strategy to discover the potential pharmacological mechanism of Huang-Qi-Gui-Zhi-Wu-Wu decoction against deep vein thrombosis.
Autorzy:: Fan W; Department of Orthopaedics, The Affiliated Hospital of Southwest Medical University, Luzhou, China.; Sichuan Provincial Laboratory of Orthopaedic Engineering, Luzhou, China.
Lan S; Department of Hepatobiliary Surgery, The Affiliated Hospital of Southwest Medical University, Luzhou, 646000, Sichuan, China.
Yang Y; Department of Orthopaedics, The Affiliated Hospital of Southwest Medical University, Luzhou, China. .; Sichuan Provincial Laboratory of Orthopaedic Engineering, Luzhou, China. .
Liang J; Department of Orthopaedics, The Affiliated Hospital of Southwest Medical University, Luzhou, China. .; Sichuan Provincial Laboratory of Orthopaedic Engineering, Luzhou, China. .; Pokaż więcej
Źródło:: Journal of orthopaedic surgery and research [J Orthop Surg Res] 2023 Jun 30; Vol. 18 (1), pp. 475. Date of Electronic Publication: 2023 Jun 30.
Typ publikacji:: Journal Article
MeSH Terms:: Neuroprotective Agents*
Atherosclerosis*
Venous Thrombosis*/drug therapy
Humans ; Molecular Docking Simulation ; Proto-Oncogene Proteins c-akt ; Kaempferols ; Network Pharmacology ; Interleukin-6 ; Phosphatidylinositol 3-Kinases ; Quercetin ; Databases, Genetic

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Skocz do pozycji: 14.

Tytuł:: DREAM: a database of experimentally supported protein-coding RNAs and drug associations in human cancer.
Autorzy:: Li S; Department of Neurosurgery, the Second Affiliated Hospital of Harbin Medical University, Neuroscience Institute, Heilongjiang Academy of Medical Sciences, Harbin, 150086, China.
Li L; Department of Neurosurgery, the Second Affiliated Hospital of Harbin Medical University, Neuroscience Institute, Heilongjiang Academy of Medical Sciences, Harbin, 150086, China.
Meng X; Department of Neurosurgery, the Second Affiliated Hospital of Harbin Medical University, Neuroscience Institute, Heilongjiang Academy of Medical Sciences, Harbin, 150086, China.
Sun P; Department of Neurosurgery, the Second Affiliated Hospital of Harbin Medical University, Neuroscience Institute, Heilongjiang Academy of Medical Sciences, Harbin, 150086, China.
Liu Y; Department of Neurosurgery, the Second Affiliated Hospital of Harbin Medical University, Neuroscience Institute, Heilongjiang Academy of Medical Sciences, Harbin, 150086, China.
Song Y; Department of Neurosurgery, the Second Affiliated Hospital of Harbin Medical University, Neuroscience Institute, Heilongjiang Academy of Medical Sciences, Harbin, 150086, China.
Zhang S; Department of Educational Administration, the Second Affiliated Hospital of Harbin Medical University, Harbin, 150086, China.
Jiang C; Department of Neurosurgery, the Second Affiliated Hospital of Harbin Medical University, Neuroscience Institute, Heilongjiang Academy of Medical Sciences, Harbin, 150086, China. .
Cai J; Department of Neurosurgery, the Second Affiliated Hospital of Harbin Medical University, Neuroscience Institute, Heilongjiang Academy of Medical Sciences, Harbin, 150086, China. .; Department of Microbiology, Tumor and Cell Biology (MTC), Biomedicum, Karolinska Institutet, 171 65, Stockholm, Sweden. .
Zhao Z; Beijing Neurosurgical Institute, Capital Medical University, Beijing, 100070, China. .; Pokaż więcej
Źródło:: Molecular cancer [Mol Cancer] 2021 Nov 13; Vol. 20 (1), pp. 148. Date of Electronic Publication: 2021 Nov 13.
Typ publikacji:: Letter; Research Support, Non-U.S. Gov't
MeSH Terms:: Databases, Genetic*
Drug Discovery*/methods
Open Reading Frames*
Gene Expression Regulation/*drug effects
RNA, Messenger/*genetics
Humans

Raport

na półce

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Skocz do pozycji: 15.

Tytuł:: BDdb: a comprehensive platform for exploration and utilization of birth defect multi-omics data.
Autorzy:: Zhang D; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China.; Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, 518120, People's Republic of China.; Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, People's Republic of China.
Zhou S; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.; BGI Genomics, BGI-Shenzhen, Shenzhen, 518083, People's Republic of China.
Zhou Z; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China.
Jiang X; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China.
Chen D; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China.
Sun HX; Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, 518120, People's Republic of China.; Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, People's Republic of China.; China National Genebank, BGI-Shenzhen, Shenzhen, 518120, People's Republic of China.
Huang J; National Institutes for Food and Drug Control (NIFDC), Beijing, 100050, People's Republic of China.
Qu S; National Institutes for Food and Drug Control (NIFDC), Beijing, 100050, People's Republic of China.
Yang S; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China.
Gu Y; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China.; Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, 518120, People's Republic of China.; Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, People's Republic of China.
Zhang X; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China.
Jin X; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China. .; Guangdong Provincial Key Laboratory of Human Disease GenomicsShenzhen Key Laboratory of Genomics, BGI-Shenzhen, Shenzhen, 518083, People's Republic of China. .
Gao Y; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China. .; Shenzhen Engineering Laboratory for Birth Defects Screening, BGI-Shenzhen, Shenzhen, 518083, People's Republic of China. .
Shen Y; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China. .; Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, 518120, People's Republic of China. .; Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, People's Republic of China. .
Chen F; BGI-Shenzhen, Shenzhen, 518083, People's Republic of China. .; MGI, BGI-Shenzhen, Shenzhen, 518083, People's Republic of China. .; Pokaż więcej
Źródło:: BMC medical genomics [BMC Med Genomics] 2021 Nov 04; Vol. 14 (1), pp. 260. Date of Electronic Publication: 2021 Nov 04.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Databases, Genetic*
Genomics*
Metabolomics*
Proteomics*
Congenital Abnormalities/*genetics
Humans

Czasopismo naukowe

na półce

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Skocz do pozycji: 16.

Tytuł:: Manual Annotation Studio (MAS): a collaborative platform for manual functional annotation of viral and microbial genomes.
Autorzy:: Lueder MR; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Cer RZ; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.
Patrick M; Mount St. Mary's University, Emmitsburg, MD, USA.
Voegtly LJ; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Long KA; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Rice GK; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA.; Leidos, Reston, VA, USA.
Bishop-Lilly KA; Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Center, Fort Detrick, MD, USA. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2021 Oct 09; Vol. 22 (1), pp. 733. Date of Electronic Publication: 2021 Oct 09.
Typ publikacji:: Journal Article
MeSH Terms:: Databases, Genetic*
Genome, Microbial*
Databases, Protein ; Genome, Viral ; Software

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na półce

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Skocz do pozycji: 17.

Tytuł:: MetaGeneBank: a standardized database to study deep sequenced metagenomic data from human fecal specimen.
Autorzy:: Shao L; Hangzhou Normal University, Institute of Translational Medicine, The Affiliated Hospital of Hangzhou Normal University, Hangzhou, 311121, Zhejiang, China.; iMedicine Lab, Alibaba-Zhejiang University Joint Research Center for Future Digital Health , Hangzhou, 310018, Zhejiang, China.
Liao J; Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University , Hangzhou, 310003, China.
Qian J; Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University , Hangzhou, 310003, China.
Chen W; The First Affiliated Hospital, School of Medicine, Zhejiang University , Hangzhou, 310003, Zhejiang, China.
Fan X; Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University , Hangzhou, 310003, China. .; iMedicine Lab, Alibaba-Zhejiang University Joint Research Center for Future Digital Health , Hangzhou, 310018, Zhejiang, China. .; Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou , Hangzhou, 310058, China. .; Pokaż więcej
Źródło:: BMC microbiology [BMC Microbiol] 2021 Sep 30; Vol. 21 (1), pp. 263. Date of Electronic Publication: 2021 Sep 30.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Databases, Genetic*
Feces/*microbiology
Metagenomics/*instrumentation
Gastrointestinal Microbiome/genetics ; High-Throughput Nucleotide Sequencing ; Humans

Czasopismo naukowe

na półce

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Skocz do pozycji: 18.

Tytuł:: PhenoDB, GeneMatcher and VariantMatcher, tools for analysis and sharing of sequence data.
Autorzy:: Wohler E; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Martin R; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Griffith S; Center for Inherited Disease Research - CIDR, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Rodrigues EDS; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Antonescu C; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Posey JE; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Coban-Akdemir Z; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Jhangiani SN; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Doheny KF; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.; Center for Inherited Disease Research - CIDR, Johns Hopkins School of Medicine, Baltimore, MD, USA.
Lupski JR; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.; Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA.; Texas Children's Hospital, Houston, TX, USA.
Valle D; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Hamosh A; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Sobreira N; Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA. .; Pokaż więcej
Źródło:: Orphanet journal of rare diseases [Orphanet J Rare Dis] 2021 Aug 18; Vol. 16 (1), pp. 365. Date of Electronic Publication: 2021 Aug 18.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:: Databases, Genetic*
Genomics*
Computational Biology ; Humans ; Phenotype ; Software

Czasopismo naukowe

na półce

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Skocz do pozycji: 19.

Tytuł:: OrchidBase 4.0: a database for orchid genomics and molecular biology.
Autorzy:: Hsiao YY; Orchid Research and Development Center, National Cheng Kung University, Tainan, 70101, Taiwan.
Fu CH; Orchid Research and Development Center, National Cheng Kung University, Tainan, 70101, Taiwan.; Department of Electrical Engineering, National Cheng Kung University, Tainan, 70101, Taiwan.
Ho SY; Department of Electrical Engineering, National Cheng Kung University, Tainan, 70101, Taiwan.
Li CI; Department of Statistics, National Cheng Kung University, Tainan, 70101, Taiwan.
Chen YY; Department of Life Sciences, National Cheng Kung University, Tainan, 70101, Taiwan.
Wu WL; Orchid Research and Development Center, National Cheng Kung University, Tainan, 70101, Taiwan.; Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, Tainan, 70101, Taiwan.
Wang JS; Department of Electrical Engineering, National Cheng Kung University, Tainan, 70101, Taiwan.
Zhang DY; Key Lab of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Hu WQ; Key Lab of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Yu X; Key Lab of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Sun WH; Key Lab of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Zhou Z; Key Lab of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.; Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences, Wenzhou, 325005, China.
Liu KW; School of Life Sciences, Tsinghua University, Beijing, 100084, China.; Tsinghua-Berkeley Shenzhen Institute (TBSI), Center for Biotechnology and Biomedicine and Shenzhen Key Laboratory of Gene and Antibody Therapy, State Key Laboratory of Chemical Oncogenomics, State Key Laboratory of Health Sciences and Technology, Institute of Biopharmaceutical and Health Engineering (iBHE), Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, China.
Huang L; School of Life Sciences, Tsinghua University, Beijing, 100084, China.; Tsinghua-Berkeley Shenzhen Institute (TBSI), Center for Biotechnology and Biomedicine and Shenzhen Key Laboratory of Gene and Antibody Therapy, State Key Laboratory of Chemical Oncogenomics, State Key Laboratory of Health Sciences and Technology, Institute of Biopharmaceutical and Health Engineering (iBHE), Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, China.
Lan SR; Key Lab of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
Chen HH; Orchid Research and Development Center, National Cheng Kung University, Tainan, 70101, Taiwan.; Department of Life Sciences, National Cheng Kung University, Tainan, 70101, Taiwan.
Wu WS; Department of Electrical Engineering, National Cheng Kung University, Tainan, 70101, Taiwan. .
Liu ZJ; Key Lab of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China. .; Zhejiang Institute of Subtropical Crops, Zhejiang Academy of Agricultural Sciences, Wenzhou, 325005, China. .; Tsinghua-Berkeley Shenzhen Institute (TBSI), Center for Biotechnology and Biomedicine and Shenzhen Key Laboratory of Gene and Antibody Therapy, State Key Laboratory of Chemical Oncogenomics, State Key Laboratory of Health Sciences and Technology, Institute of Biopharmaceutical and Health Engineering (iBHE), Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, China. .; Henry Fok College of Biology and Agriculture, Shaoguan University, Shaoguan, 512005, China. .
Tsai WC; Orchid Research and Development Center, National Cheng Kung University, Tainan, 70101, Taiwan. .; Department of Life Sciences, National Cheng Kung University, Tainan, 70101, Taiwan. .; Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, Tainan, 70101, Taiwan. .; Pokaż więcej
Źródło:: BMC plant biology [BMC Plant Biol] 2021 Aug 12; Vol. 21 (1), pp. 371. Date of Electronic Publication: 2021 Aug 12.
Typ publikacji:: Journal Article
MeSH Terms:: Databases, Genetic*
Orchidaceae/*genetics
Genome, Plant

Czasopismo naukowe

na półce

Pełny tekst Szczegóły

Skocz do pozycji: 20.

Tytuł:: BarleyExpDB: an integrative gene expression database for barley.
Autorzy:: Li T; College of Bioscience and Engineering, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China.; State Key Laboratory of Crop Stress Biology in Arid Areas and College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Li Y; College of Bioscience and Engineering, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China.
Shangguan H; College of Bioscience and Engineering, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China.
Bian J; Peking University Institute of Advanced Agricultural Sciences, Weifang, 261325, Shandong, China.
Luo R; College of Bioscience and Engineering, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China.
Tian Y; Xintai Urban and Rural Development Group Co., Ltd, Taian, 271200, Shandong, China.
Li Z; College of Bioscience and Engineering, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China.
Nie X; State Key Laboratory of Crop Stress Biology in Arid Areas and College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China. .
Cui L; College of Bioscience and Engineering, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China. .; Pokaż więcej
Źródło:: BMC plant biology [BMC Plant Biol] 2023 Mar 31; Vol. 23 (1), pp. 170. Date of Electronic Publication: 2023 Mar 31.
Typ publikacji:: Journal Article
MeSH Terms:: Hordeum*/genetics
Genomics ; Databases, Genetic ; Computational Biology ; Gene Expression ; Gene Expression Profiling

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