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Wyszukujesz frazę ""Epsilonproteobacteria"" wg kryterium: Temat


Tytuł :
Nitrosophilus alvini gen. nov., sp. nov., a hydrogen-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal vent in the East Pacific Rise, inferred by a genome-based taxonomy of the phylum "Campylobacterota".
Autorzy :
Shiotani T; Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Mino S; Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Sato W; Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Nishikawa S; Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Yonezawa M; Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Sievert SM; Department of Biology, Woods Hole Oceanographic Institution, Woods Hole, MA, United States of America.
Sawabe T; Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
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Źródło :
PloS one [PLoS One] 2020 Dec 10; Vol. 15 (12), pp. e0241366. Date of Electronic Publication: 2020 Dec 10 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Epsilonproteobacteria/*classification
Hydrothermal Vents/*microbiology
DNA, Bacterial/genetics ; Epsilonproteobacteria/genetics ; Epsilonproteobacteria/metabolism ; Genome, Bacterial ; Hydrogen/metabolism ; Oxidation-Reduction ; Pacific Ocean ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Seawater/microbiology ; Species Specificity ; Terminology as Topic
SCR Organism :
Cetia pacifica
Czasopismo naukowe
Tytuł :
Effect of long-term methylene blue treatment on the composition of mouse gut microbiome and its relationship with the cognitive abilities of mice.
Autorzy :
Gureev AP; Department of Genetics, Cytology and Bioengineering, Voronezh State University, Voronezh, Russia.
Syromyatnikov MY; Department of Genetics, Cytology and Bioengineering, Voronezh State University, Voronezh, Russia.; Laboratory of Metagenomics and Food Biotechnology, Voronezh State University of Engineering Technologies, Voronezh, Russia.; Laboratory of Innovative Recombinant Proteomics, All-Russian Veterinary Research Institute of Pathology, Pharmacology and Therapy, Voronezh, Russia.
Ignatyeva DA; Department of Genetics, Cytology and Bioengineering, Voronezh State University, Voronezh, Russia.
Valuyskikh VV; Department of Genetics, Cytology and Bioengineering, Voronezh State University, Voronezh, Russia.
Solodskikh SA; Department of Genetics, Cytology and Bioengineering, Voronezh State University, Voronezh, Russia.; Laboratory of Metagenomics and Food Biotechnology, Voronezh State University of Engineering Technologies, Voronezh, Russia.
Panevina AV; Department of Genetics, Cytology and Bioengineering, Voronezh State University, Voronezh, Russia.; Laboratory of Metagenomics and Food Biotechnology, Voronezh State University of Engineering Technologies, Voronezh, Russia.
Gryaznova MV; Department of Genetics, Cytology and Bioengineering, Voronezh State University, Voronezh, Russia.; Laboratory of Metagenomics and Food Biotechnology, Voronezh State University of Engineering Technologies, Voronezh, Russia.
Kokina AV; Department of Genetics, Cytology and Bioengineering, Voronezh State University, Voronezh, Russia.; Laboratory of Metagenomics and Food Biotechnology, Voronezh State University of Engineering Technologies, Voronezh, Russia.
Popov VN; Department of Genetics, Cytology and Bioengineering, Voronezh State University, Voronezh, Russia.; Laboratory of Metagenomics and Food Biotechnology, Voronezh State University of Engineering Technologies, Voronezh, Russia.
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Źródło :
PloS one [PLoS One] 2020 Nov 18; Vol. 15 (11), pp. e0241784. Date of Electronic Publication: 2020 Nov 18 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Methylene Blue/*pharmacology
Animals ; Bacteroidetes/genetics ; Bacteroidetes/metabolism ; Cognition/drug effects ; Cognition/physiology ; Epsilonproteobacteria/genetics ; Epsilonproteobacteria/metabolism ; Gastrointestinal Microbiome/drug effects ; Gastrointestinal Microbiome/genetics ; High-Throughput Nucleotide Sequencing ; Maze Learning ; Mice ; Mice, Inbred C57BL ; Proteobacteria/genetics ; Proteobacteria/metabolism
Czasopismo naukowe
Tytuł :
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria).
Autorzy :
Assié A; Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany. .; Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA. .
Leisch N; Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany.
Meier DV; Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany.; Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Althanstrasse 14, 1090, Vienna, Austria.
Gruber-Vodicka H; Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany.
Tegetmeyer HE; Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany.; Center for Biotechnology, Bielefeld University, Universitaetsstrasse 27, 33615, Bielefeld, Germany.
Meyerdierks A; Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany.
Kleiner M; Department of Geoscience, University of Calgary, 2500 University Drive Northwest, Alberta, Calgary, AB, T2N 1N4, Canada.; Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA.
Hinzke T; Department of Geoscience, University of Calgary, 2500 University Drive Northwest, Alberta, Calgary, AB, T2N 1N4, Canada.; Department of Pharmaceutical Biotechnology, University of Greifswald, Institute of Pharmacy, D-17489, Greifswald, Germany.; Institute of Marine Biotechnology, D-17489, Greifswald, Germany.
Joye S; Department of Marine Sciences, The University of Georgia, Room 159, Marine Sciences Bldg, Athens, GA, 30602-3636, USA.
Saxton M; Department of Marine Sciences, The University of Georgia, Room 159, Marine Sciences Bldg, Athens, GA, 30602-3636, USA.; Department of Biological Sciences, Miami University, 4200N University Blvd, Middletown, OH, 45042, USA.
Dubilier N; Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany. .; MARUM-Zentrum für Marine Umweltwissenschaften, University of Bremen, Leobener Str. 2, 28359, Bremen, Germany. .
Petersen JM; Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359, Bremen, Germany. .; Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, University of Vienna, Althanstrasse 14, 1090, Vienna, Austria. .
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Źródło :
The ISME journal [ISME J] 2020 Jan; Vol. 14 (1), pp. 104-122. Date of Electronic Publication: 2019 Sep 27.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Photosynthesis*
Epsilonproteobacteria/*metabolism
Animals ; Bivalvia/microbiology ; Carbon Cycle ; Citric Acid Cycle ; Epsilonproteobacteria/classification ; Epsilonproteobacteria/genetics ; Gammaproteobacteria/genetics ; Phylogeny ; Symbiosis
Czasopismo naukowe
Tytuł :
Enrichment of intracellular sulphur cycle -associated bacteria in intertidal benthic foraminifera revealed by 16S and aprA gene analysis.
Autorzy :
Salonen IS; University of Helsinki, Faculty of Biological and Environmental Sciences, Ecosystems and Environment Research Program, P.O. Box 65 (Viikinkaari 1), FI-00014 University of Helsinki, Helsinki, Finland. .
Chronopoulou P-; University of Helsinki, Faculty of Biological and Environmental Sciences, Ecosystems and Environment Research Program, P.O. Box 65 (Viikinkaari 1), FI-00014 University of Helsinki, Helsinki, Finland.
Bird C; University of Stirling, Biological and Environmental Sciences, FK9 ALA, Stirling, United Kingdom.
Reichart G-; Department of Ocean Systems, NIOZ-Royal Netherlands Institute for Sea Research and Utrecht University, Den Burg, The Netherlands.; Department of Earth Sciences - Geochemistry, Faculty of Geosciences, Utrecht University, P.O. Box 80.021, 3508 TA, Utrecht, The Netherlands.
Koho KA; University of Helsinki, Faculty of Biological and Environmental Sciences, Ecosystems and Environment Research Program, P.O. Box 65 (Viikinkaari 1), FI-00014 University of Helsinki, Helsinki, Finland.
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Źródło :
Scientific reports [Sci Rep] 2019 Aug 12; Vol. 9 (1), pp. 11692. Date of Electronic Publication: 2019 Aug 12.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Deltaproteobacteria/*genetics
Epsilonproteobacteria/*genetics
Foraminifera/*microbiology
Gammaproteobacteria/*genetics
Sulfur/*metabolism
Symbiosis/*physiology
Bacteroidaceae/classification ; Bacteroidaceae/genetics ; Bacteroidaceae/isolation & purification ; Campylobacter/classification ; Campylobacter/genetics ; Campylobacter/isolation & purification ; DNA Barcoding, Taxonomic/methods ; DNA, Bacterial/genetics ; Deltaproteobacteria/classification ; Deltaproteobacteria/isolation & purification ; Epsilonproteobacteria/classification ; Epsilonproteobacteria/isolation & purification ; Foraminifera/physiology ; Gammaproteobacteria/classification ; Gammaproteobacteria/isolation & purification ; Geologic Sediments/chemistry ; Geologic Sediments/microbiology ; North Sea ; Phylogeny ; Principal Component Analysis ; RNA, Ribosomal, 16S/genetics ; Seawater/chemistry ; Seawater/microbiology ; Serine Endopeptidases/genetics ; Sulfur/chemistry
Czasopismo naukowe
Tytuł :
Characterization of eubacterial communities by Denaturing Gradient Gel Electrophoresis (DGGE) and Next Generation Sequencing (NGS) in a desulfurization biotrickling filter using progressive changes of nitrate and nitrite as final electron acceptors.
Autorzy :
Brito J; Department of Chemical Engineering and Food Technologies, Faculty of Sciences, University of Cadiz, Institute of Viticulture and Agri-food research (IVAGRO), 11510 Puerto Real, Cádiz, Spain.
Valle A; Department of Biomedicine, Biotechnology and Public Health-Biochemistry and Molecular Biology, Faculty of Sciences, University of Cadiz, Institute of Viticulture and Agri-food research (IVAGRO), 11510 Puerto Real, Cádiz, Spain. Electronic address: .
Almenglo F; Department of Chemical Engineering and Food Technologies, Faculty of Sciences, University of Cadiz, Institute of Viticulture and Agri-food research (IVAGRO), 11510 Puerto Real, Cádiz, Spain.
Ramírez M; Department of Chemical Engineering and Food Technologies, Faculty of Sciences, University of Cadiz, Institute of Viticulture and Agri-food research (IVAGRO), 11510 Puerto Real, Cádiz, Spain.
Cantero D; Department of Chemical Engineering and Food Technologies, Faculty of Sciences, University of Cadiz, Institute of Viticulture and Agri-food research (IVAGRO), 11510 Puerto Real, Cádiz, Spain.
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Źródło :
New biotechnology [N Biotechnol] 2020 Jul 25; Vol. 57, pp. 67-75. Date of Electronic Publication: 2020 Apr 28.
Typ publikacji :
Journal Article
MeSH Terms :
Denaturing Gradient Gel Electrophoresis*
Electrons*
Filtration*
High-Throughput Nucleotide Sequencing*
Nitrates/*chemistry
Nitrites/*chemistry
Epsilonproteobacteria/chemistry ; Microbiota ; Thiobacillus/chemistry
Czasopismo naukowe
Tytuł :
Targeted metabolomics reveals proline as a major osmolyte in the chemolithoautotroph Sulfurimonas denitrificans.
Autorzy :
Götz F; Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Longnecker K; Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Kido Soule MC; Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Becker KW; Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
McNichol J; Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Kujawinski EB; Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Sievert SM; Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
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Źródło :
MicrobiologyOpen [Microbiologyopen] 2018 Aug; Vol. 7 (4), pp. e00586. Date of Electronic Publication: 2018 Feb 09.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Epsilonproteobacteria/*metabolism
Proline/*metabolism
Chemoautotrophic Growth ; Chromatography, Liquid ; Ecosystem ; Epsilonproteobacteria/chemistry ; Epsilonproteobacteria/genetics ; Metabolomics ; Oxidation-Reduction ; Proline/analysis ; Tandem Mass Spectrometry
Czasopismo naukowe
Tytuł :
Structural studies reveal a ring-shaped architecture of deep-sea vent phage NrS-1 polymerase.
Autorzy :
Chen X; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Public Health Clinical Center, School of Life Sciences, Fudan University, Shanghai 200438, China.; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China.
Su S; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China.
Chen Y; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Public Health Clinical Center, School of Life Sciences, Fudan University, Shanghai 200438, China.
Gao Y; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Public Health Clinical Center, School of Life Sciences, Fudan University, Shanghai 200438, China.
Li Y; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Public Health Clinical Center, School of Life Sciences, Fudan University, Shanghai 200438, China.
Shao Z; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Public Health Clinical Center, School of Life Sciences, Fudan University, Shanghai 200438, China.
Zhang Y; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Public Health Clinical Center, School of Life Sciences, Fudan University, Shanghai 200438, China.
Shao Q; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Public Health Clinical Center, School of Life Sciences, Fudan University, Shanghai 200438, China.
Liu H; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Public Health Clinical Center, School of Life Sciences, Fudan University, Shanghai 200438, China.
Li J; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Physiology and Biophysics, School of Life Sciences, Fudan University, Shanghai 200438, China.
Ma J; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China.
Gan J; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Shanghai Public Health Clinical Center, School of Life Sciences, Fudan University, Shanghai 200438, China.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Apr 06; Vol. 48 (6), pp. 3343-3355.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Protein Conformation*
Bacteriophages/*enzymology
DNA Replication/*genetics
DNA-Directed DNA Polymerase/*ultrastructure
Amino Acid Sequence/genetics ; Bacteriophages/genetics ; Bacteriophages/ultrastructure ; Crystallography, X-Ray ; DNA-Directed DNA Polymerase/chemistry ; Ecosystem ; Epsilonproteobacteria/genetics ; Epsilonproteobacteria/virology ; Hydrothermal Vents/chemistry
Czasopismo naukowe
Tytuł :
Sulfurovum denitrificans sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing epsilonproteobacterium isolated from a hydrothermal field.
Autorzy :
Mori K; NITE Biological Resource Center (NBRC), National Institute of Technology and Evaluation (NITE), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan.
Yamaguchi K; NITE Biological Resource Center (NBRC), National Institute of Technology and Evaluation (NITE), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan.
Hanada S; Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan.; Graduate School of Science and Engineering, Tokyo Metropolitan University, 1-1 Minami-Osawa, Hachioji, Tokyo 192-0397, Japan.
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Źródło :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2018 Jul; Vol. 68 (7), pp. 2183-2187. Date of Electronic Publication: 2018 May 14.
Typ publikacji :
Journal Article
MeSH Terms :
Phylogeny*
Epsilonproteobacteria/*classification
Seawater/*microbiology
Sulfur/*metabolism
Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial/genetics ; Epsilonproteobacteria/genetics ; Epsilonproteobacteria/isolation & purification ; Fatty Acids/chemistry ; Oxidation-Reduction ; Pacific Ocean ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Sulfur-Reducing Bacteria/classification ; Sulfur-Reducing Bacteria/genetics ; Sulfur-Reducing Bacteria/isolation & purification ; Thiosulfates/metabolism ; Vitamin K 2/analogs & derivatives ; Vitamin K 2/chemistry
Czasopismo naukowe
Tytuł :
Lebetimonas natsushimae sp. nov., a novel strictly anaerobic, moderately thermophilic chemoautotroph isolated from a deep-sea hydrothermal vent polychaete nest in the Mid-Okinawa Trough.
Autorzy :
Nagata R; Laboratory of Marine Environmental Microbiology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
Takaki Y; Department of Subsurface Geobiological Analysis and Research (D-SUGAR), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Tame A; Department of Technical Services, Marine Works Japan, Ltd., Yokosuka, Japan.
Nunoura T; Marine Functional Biology Group, Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Muto H; Laboratory of Marine Environmental Microbiology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
Mino S; Laboratory of Microbiology, Faculty of Fisheries Sciences, Hokkaido University, Hakodate, Japan.
Sawayama S; Laboratory of Marine Environmental Microbiology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
Takai K; Department of Subsurface Geobiological Analysis and Research (D-SUGAR), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.
Nakagawa S; Laboratory of Marine Environmental Microbiology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan; Department of Subsurface Geobiological Analysis and Research (D-SUGAR), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan. Electronic address: .
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Źródło :
Systematic and applied microbiology [Syst Appl Microbiol] 2017 Sep; Vol. 40 (6), pp. 352-356. Date of Electronic Publication: 2017 Jul 04.
Typ publikacji :
Journal Article
MeSH Terms :
Water Microbiology*
Epsilonproteobacteria/*classification
Epsilonproteobacteria/*isolation & purification
Hydrothermal Vents/*microbiology
Seawater/*microbiology
Bacteria, Anaerobic ; Base Composition ; Epsilonproteobacteria/genetics ; Epsilonproteobacteria/metabolism ; Fatty Acids/chemistry ; Fatty Acids/metabolism ; Genome, Bacterial ; Phylogeny ; RNA, Ribosomal, 16S/genetics
Czasopismo naukowe
Tytuł :
First description of a new uncultured epsilon sulfur bacterium colonizing marine mangrove sediment in the Caribbean: Thiovulum sp. strain karukerense.
Autorzy :
Gros O; Sorbonne Universités, UPMC Univ Paris 06, Univ Antilles, Univ Nice Sophia Antipolis, CNRS, Evolution Paris Seine - Institut de Biologie Paris Seine (EPS - IBPS), 75005 Paris, France.; C3MAG, UFR des Sciences Exactes et Naturelles, Université des Antilles, BP 592 - 97159 Pointe-à-Pitre, Guadeloupe, French West Indies.
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Źródło :
FEMS microbiology letters [FEMS Microbiol Lett] 2017 Oct 02; Vol. 364 (18).
Typ publikacji :
Journal Article
MeSH Terms :
Wetlands*
Epsilonproteobacteria/*classification
Geologic Sediments/*microbiology
Sulfur/*metabolism
Sulfur-Reducing Bacteria/*classification
Caribbean Region ; DNA, Bacterial/genetics ; Epsilonproteobacteria/genetics ; Epsilonproteobacteria/isolation & purification ; Epsilonproteobacteria/ultrastructure ; Flagella ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Sulfur/chemistry ; Sulfur-Reducing Bacteria/genetics ; Sulfur-Reducing Bacteria/isolation & purification
Czasopismo naukowe
Tytuł :
An unconventional family 1 uracil DNA glycosylase in Nitratifractor salsuginis.
Autorzy :
Li J; Department of Genetics and Biochemistry, Clemson University, SC, USA.
Chen R; State Key Laboratory for Biocontrol, School of Life Sciences, The Sun Yat-Sen University, Guangzhou, Guangdong, China.
Yang Y; Department of Genetics and Biochemistry, Clemson University, SC, USA.
Zhang Z; State Key Laboratory for Biocontrol, School of Life Sciences, The Sun Yat-Sen University, Guangzhou, Guangdong, China.
Fang GC; Department of Genetics and Biochemistry, Clemson University, SC, USA.
Xie W; State Key Laboratory for Biocontrol, School of Life Sciences, The Sun Yat-Sen University, Guangzhou, Guangdong, China.
Cao W; Department of Genetics and Biochemistry, Clemson University, SC, USA.
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Źródło :
The FEBS journal [FEBS J] 2017 Dec; Vol. 284 (23), pp. 4017-4034. Date of Electronic Publication: 2017 Oct 26.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Bacterial Proteins/*chemistry
DNA/*chemistry
Epsilonproteobacteria/*enzymology
Uracil-DNA Glycosidase/*chemistry
Amino Acid Sequence ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Binding Sites ; Crystallography, X-Ray ; DNA/genetics ; DNA/metabolism ; Epsilonproteobacteria/genetics ; Molecular Dynamics Simulation ; Nucleic Acid Conformation ; Protein Binding ; Protein Domains ; Sequence Homology, Amino Acid ; Uracil-DNA Glycosidase/genetics ; Uracil-DNA Glycosidase/metabolism
Czasopismo naukowe
Tytuł :
Diversity of Total Bacterial Communities and Chemoautotrophic Populations in Sulfur-Rich Sediments of Shallow-Water Hydrothermal Vents off Kueishan Island, Taiwan.
Autorzy :
Wang L; Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, 201306, People's Republic of China. .
Cheung MK; School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, People's Republic of China.
Liu R; Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai, 201306, People's Republic of China.
Wong CK; School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, People's Republic of China.
Kwan HS; School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, People's Republic of China.
Hwang JS; Institute of Marine Biology, National Taiwan Ocean University, Keelung, Taiwan.
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Źródło :
Microbial ecology [Microb Ecol] 2017 Apr; Vol. 73 (3), pp. 571-582. Date of Electronic Publication: 2016 Dec 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Alphaproteobacteria/*metabolism
Chemoautotrophic Growth/*physiology
Epsilonproteobacteria/*metabolism
Geologic Sediments/*microbiology
Hydrothermal Vents/*microbiology
Alphaproteobacteria/classification ; Alphaproteobacteria/genetics ; Epsilonproteobacteria/classification ; Epsilonproteobacteria/isolation & purification ; Geologic Sediments/chemistry ; RNA, Ribosomal, 16S/genetics ; Seawater/microbiology ; Sulfur/chemistry ; Taiwan
Czasopismo naukowe
Tytuł :
Microbial potential for carbon and nutrient cycling in a geogenic supercritical carbon dioxide reservoir.
Autorzy :
Freedman AJE; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Tan B; Center for Environmental Sensing and Modeling, Singapore-MIT Alliance for Research and Technology, Singapore, Singapore.
Thompson JR; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.; Center for Environmental Sensing and Modeling, Singapore-MIT Alliance for Research and Technology, Singapore, Singapore.
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Źródło :
Environmental microbiology [Environ Microbiol] 2017 Jun; Vol. 19 (6), pp. 2228-2245. Date of Electronic Publication: 2017 May 02.
Typ publikacji :
Journal Article
MeSH Terms :
Carbon Dioxide/*metabolism
Clostridiales/*metabolism
Desulfovibrio/*metabolism
Epsilonproteobacteria/*metabolism
Rhizobium/*metabolism
Carbon/metabolism ; Carbon Cycle/physiology ; Carbon Sequestration/physiology ; Clostridiales/classification ; Clostridiales/genetics ; Colorado ; Desulfovibrio/classification ; Desulfovibrio/genetics ; Ecosystem ; Epsilonproteobacteria/classification ; Epsilonproteobacteria/genetics ; Genome, Bacterial/genetics ; Metagenome ; RNA, Ribosomal, 16S/genetics ; Rhizobium/classification ; Rhizobium/genetics
Czasopismo naukowe
Tytuł :
Epsilonproteobacteria dominate bacterial diversity at a natural tar seep.
Autorzy :
Lormières F; Département de biologie, ENS de Lyon, 69364 Lyon, France; Université de Lyon, ENS de Lyon, CNRS UMR 5276, 69364 Lyon, France.
Oger PM; Université de Lyon, ENS de Lyon, CNRS UMR 5276, 69364 Lyon, France; Université de Lyon, INSA Lyon, UCBL, CNRS, UMR5240, 69621 Villeurbanne, France. Electronic address: .
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Źródło :
Comptes rendus biologies [C R Biol] 2017 Apr; Vol. 340 (4), pp. 238-243. Date of Electronic Publication: 2017 Mar 31.
Typ publikacji :
Journal Article
MeSH Terms :
Tars*
Epsilonproteobacteria/*growth & development
Epsilonproteobacteria/isolation & purification ; Water Microbiology ; Water Pollutants/chemistry
Czasopismo naukowe
Tytuł :
Abundance of sulfur-degrading bacteria in a benthic bacterial community of shallow sea sediment in the off-Terengganu coast of the South China Sea.
Autorzy :
Marziah Z; Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Jalan Sultan Yahya Petra, Kuala Lumpur, 54100, Malaysia.
Mahdzir A; Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Jalan Sultan Yahya Petra, Kuala Lumpur, 54100, Malaysia.; Ocean Thermal Energy Centre (OTEC-KL), Universiti Teknologi Malaysia, Jalan Sultan Yahya Petra, Kuala Lumpur, 54100, Malaysia.
Musa MN; Ocean Thermal Energy Centre (OTEC-KL), Universiti Teknologi Malaysia, Jalan Sultan Yahya Petra, Kuala Lumpur, 54100, Malaysia.
Jaafar AB; Perdana School of Science, Technology and Innovation Policy, Universiti Teknologi Malaysia, Jalan Sultan Yahya Petra, Kuala Lumpur, 54100, Malaysia.
Azhim A; Kuliyyah of Science, International Islamic University Malaysia, Kuantan, 25200, Malaysia.
Hara H; Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Jalan Sultan Yahya Petra, Kuala Lumpur, 54100, Malaysia.
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Źródło :
MicrobiologyOpen [Microbiologyopen] 2016 Dec; Vol. 5 (6), pp. 967-978. Date of Electronic Publication: 2016 Jun 03.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Petroleum Pollution*
Epsilonproteobacteria/*isolation & purification
Epsilonproteobacteria/*metabolism
Geologic Sediments/*microbiology
Seawater/*microbiology
Sulfur/*metabolism
Base Sequence ; China ; DNA, Bacterial/genetics ; Epsilonproteobacteria/classification ; Epsilonproteobacteria/genetics ; Hydrothermal Vents/microbiology ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Water Microbiology ; Water Pollutants, Chemical/metabolism
Czasopismo naukowe
Tytuł :
Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.
Autorzy :
Hubalek V; Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Wu X; Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, Sweden.
Eiler A; Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Buck M; Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Heim C; Universität Göttingen, GZG -Geobiologie, Göttingen, Germany.
Dopson M; Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, Sweden.
Bertilsson S; Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Ionescu D; Department of Experimental Limnology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Neuglobsow, Germany.
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Źródło :
The ISME journal [ISME J] 2016 Oct; Vol. 10 (10), pp. 2447-58. Date of Electronic Publication: 2016 Mar 29.
Typ publikacji :
Journal Article
MeSH Terms :
Biodiversity*
Epsilonproteobacteria/*isolation & purification
Epsilonproteobacteria/*metabolism
Groundwater/*microbiology
Carbon Cycle ; Epsilonproteobacteria/classification ; Epsilonproteobacteria/genetics ; Metagenomics ; Nitrogen/metabolism ; Phylogeny ; Sulfur/metabolism
Czasopismo naukowe
Tytuł :
Sulfurovum riftiae sp. nov., a mesophilic, thiosulfate-oxidizing, nitrate-reducing chemolithoautotrophic epsilonproteobacterium isolated from the tube of the deep-sea hydrothermal vent polychaete Riftia pachyptila.
Autorzy :
Giovannelli D; Institute of Earth Ocean and Atmospheric Science, Rutgers University, New Brunswick, NJ, USA.; Institute of Marine and Coastal Science, ISMAR, National Research Council of Italy, CNR Ancona, Italy.
Chung M; Institute of Earth Ocean and Atmospheric Science, Rutgers University, New Brunswick, NJ, USA.; Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA.
Staley J; Institute of Earth Ocean and Atmospheric Science, Rutgers University, New Brunswick, NJ, USA.; Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA.
Starovoytov V; Department of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, USA.
Le Bris N; Sorbonne Universités, UPMC Univ. Paris 6, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques, Observatoire Océanologique, Banyuls-sur-Mer, France.
Vetriani C; Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA.; Institute of Earth Ocean and Atmospheric Science, Rutgers University, New Brunswick, NJ, USA.
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Źródło :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2016 Jul; Vol. 66 (7), pp. 2697-2701. Date of Electronic Publication: 2016 Apr 26.
Typ publikacji :
Journal Article
MeSH Terms :
Phylogeny*
Epsilonproteobacteria/*classification
Hydrothermal Vents/*microbiology
Polychaeta/*microbiology
Seawater/*microbiology
Animals ; Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial/genetics ; Epsilonproteobacteria/genetics ; Epsilonproteobacteria/isolation & purification ; Fatty Acids/chemistry ; Nitrates/metabolism ; Oxidation-Reduction ; Phospholipids/chemistry ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Thiosulfates/metabolism ; Vitamin K 2/analogs & derivatives ; Vitamin K 2/chemistry
Czasopismo naukowe
Tytuł :
CO 2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs.
Autorzy :
Alfreider A; Institute for Ecology, University of Innsbruck, Innsbruck, Austria.
Baumer A; Institute for Ecology, University of Innsbruck, Innsbruck, Austria.
Bogensperger T; Institute for Ecology, University of Innsbruck, Innsbruck, Austria.
Posch T; Limnological Station, Department of Plant and Microbial Biology, University of Zurich, Kilchberg, Switzerland.
Salcher MM; Limnological Station, Department of Plant and Microbial Biology, University of Zurich, Kilchberg, Switzerland.; Institute of Hydrobiology, Biology Centre CAS, České Budějovice, Czech Republic.
Summerer M; Institute for Ecology, University of Innsbruck, Innsbruck, Austria.
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Źródło :
Environmental microbiology [Environ Microbiol] 2017 Jul; Vol. 19 (7), pp. 2754-2768. Date of Electronic Publication: 2017 May 29.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Carbon Cycle/*physiology
Carbon Dioxide/*metabolism
Chemoautotrophic Growth/*physiology
Chlorobi/*metabolism
Citric Acid Cycle/*physiology
Epsilonproteobacteria/*metabolism
Photosynthesis/*physiology
Archaea/metabolism ; Chlorobi/genetics ; Epsilonproteobacteria/genetics ; Hydroxybutyrates/metabolism ; Lactic Acid/analogs & derivatives ; Lactic Acid/metabolism ; Lakes/chemistry ; Lakes/microbiology ; Ribulose-Bisphosphate Carboxylase/genetics ; Ribulose-Bisphosphate Carboxylase/metabolism
Czasopismo naukowe
Tytuł :
Success of chemolithoautotrophic SUP05 and Sulfurimonas GD17 cells in pelagic Baltic Sea redox zones is facilitated by their lifestyles as K- and r-strategists.
Autorzy :
Rogge A; Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Rostock-Warnemünde, Germany.
Vogts A; Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Rostock-Warnemünde, Germany.
Voss M; Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Rostock-Warnemünde, Germany.
Jürgens K; Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Rostock-Warnemünde, Germany.
Jost G; Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Rostock-Warnemünde, Germany.
Labrenz M; Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Rostock-Warnemünde, Germany.
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Źródło :
Environmental microbiology [Environ Microbiol] 2017 Jun; Vol. 19 (6), pp. 2495-2506. Date of Electronic Publication: 2017 May 26.
Typ publikacji :
Journal Article
MeSH Terms :
Chemoautotrophic Growth/*physiology
Epsilonproteobacteria/*growth & development
Sulfur/*metabolism
Denitrification ; Epsilonproteobacteria/classification ; Isotope Labeling ; Oceans and Seas ; Oxidation-Reduction ; Oxygen ; Phylogeny ; Seawater/microbiology
Czasopismo naukowe
Tytuł :
The organohalide-respiring bacterium Sulfurospirillum multivorans: a natural source for unusual cobamides.
Autorzy :
Schubert T; Department of Applied and Ecological Microbiology, Institute of Microbiology, Friedrich Schiller University, Philosophenweg 12, 07743, Jena, Germany. .
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Źródło :
World journal of microbiology & biotechnology [World J Microbiol Biotechnol] 2017 May; Vol. 33 (5), pp. 93. Date of Electronic Publication: 2017 Apr 10.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Cobamides/*biosynthesis
Epsilonproteobacteria/*metabolism
Oxidoreductases/*metabolism
Bacterial Proteins/chemistry ; Bacterial Proteins/metabolism ; Biosynthetic Pathways ; Cobamides/chemistry ; Epsilonproteobacteria/enzymology ; Molecular Structure ; Oxidoreductases/chemistry
Czasopismo naukowe

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