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Tytuł :
On the Role of a Conserved Methionine in the Na -Coupling Mechanism of a Neurotransmitter Transporter Homolog.
Autorzy :
Zhou W; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Trinco G; Groningen Biomolecular Sciences and Biotechnology Institute, Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.
Slotboom DJ; Groningen Biomolecular Sciences and Biotechnology Institute, Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands. .
Forrest LR; Computational Structural Biology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, 20892, USA. .
Faraldo-Gómez JD; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA. jose.faraldo@nih.gov.
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Źródło :
Neurochemical research [Neurochem Res] 2021 Feb 09. Date of Electronic Publication: 2021 Feb 09.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
Conserved binding site in the N-lobe of prokaryotic MATE transporters suggests a role for Na in ion-coupled drug efflux.
Autorzy :
Castellano S; National Institutes of Health, United States.
Claxton DP; Vanderbilt University, United States.
Ficici E; National Institutes of Health, United States.
Kusakizako T; University of Tokyo, Japan.
Stix R; National Institutes of Health, United States.
Zhou W; National Institutes of Health, United States.
Nureki O; University of Tokyo, Japan.
Mchaourab HS; Dept of Molecular Physiology and Biophysics, Vanderbilt University, United States.
Faraldo-Gómez JD; National Institutes of Health, United States.
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Źródło :
The Journal of biological chemistry [J Biol Chem] 2021 Jan 05. Date of Electronic Publication: 2021 Jan 05.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
The structure of human ATG9A and its interplay with the lipid bilayer.
Autorzy :
Guardia CM; Section on Intracellular Protein Trafficking, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health , Bethesda, MD, USA.
Christenson ET; Unit on Structural and Chemical Biology of Membrane Proteins, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health , Bethesda, MD, USA.
Zhou W; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health , Bethesda, MD, USA.
Tan XF; Laboratory of Membrane Proteins and Structural Biology, Biochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health , Bethesda, MD, USA.
Lian T; Laboratory of Membrane Proteins and Structural Biology, Biochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health , Bethesda, MD, USA.
Faraldo-Gómez JD; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health , Bethesda, MD, USA.
Bonifacino JS; Section on Intracellular Protein Trafficking, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health , Bethesda, MD, USA.
Jiang J; Laboratory of Membrane Proteins and Structural Biology, Biochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health , Bethesda, MD, USA.
Banerjee A; Unit on Structural and Chemical Biology of Membrane Proteins, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health , Bethesda, MD, USA.
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Źródło :
Autophagy [Autophagy] 2020 Dec; Vol. 16 (12), pp. 2292-2293. Date of Electronic Publication: 2020 Oct 16.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural; Comment
MeSH Terms :
Autophagy*
Lipid Bilayers*
Autophagy-Related Proteins ; Humans ; Membrane Proteins ; Vesicular Transport Proteins
Czasopismo naukowe
Tytuł :
An embedded lipid in the multidrug transporter LmrP suggests a mechanism for polyspecificity.
Autorzy :
Debruycker V; Laboratory for the Structure and Function of Biological Membranes, Center for Structural Biology and Bioinformatics, Université Libre de Bruxelles, Brussels, Belgium.
Hutchin A; Laboratory for the Structure and Function of Biological Membranes, Center for Structural Biology and Bioinformatics, Université Libre de Bruxelles, Brussels, Belgium.
Masureel M; Laboratory for the Structure and Function of Biological Membranes, Center for Structural Biology and Bioinformatics, Université Libre de Bruxelles, Brussels, Belgium.; Department of Structural Biology, Genentech, Inc., South San Francisco, CA, USA.
Ficici E; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, USA.
Martens C; Laboratory for the Structure and Function of Biological Membranes, Center for Structural Biology and Bioinformatics, Université Libre de Bruxelles, Brussels, Belgium.
Legrand P; Synchrotron SOLEIL, L'Orme des Merisiers, Saint-Aubin 91192, Gif sur Yvette, France.
Stein RA; Department of Molecular Physiology and Biophysics, Vanderbilt University Medical Center, Nashville, TN, USA.
Mchaourab HS; Department of Molecular Physiology and Biophysics, Vanderbilt University Medical Center, Nashville, TN, USA.
Faraldo-Gómez JD; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, USA.
Remaut H; Structural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium.; Structural and Molecular Microbiology, VIB-VUB Center for Structural Biology, Brussels, Belgium.
Govaerts C; Laboratory for the Structure and Function of Biological Membranes, Center for Structural Biology and Bioinformatics, Université Libre de Bruxelles, Brussels, Belgium. .
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Źródło :
Nature structural & molecular biology [Nat Struct Mol Biol] 2020 Sep; Vol. 27 (9), pp. 829-835. Date of Electronic Publication: 2020 Jul 27.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Anti-Bacterial Agents/*metabolism
Bacterial Proteins/*metabolism
Lactococcus lactis/*metabolism
Membrane Transport Proteins/*metabolism
Phosphatidylglycerols/*metabolism
Bacterial Proteins/chemistry ; Binding Sites ; Biological Transport ; Crystallography, X-Ray ; Lactococcus lactis/chemistry ; Ligands ; Membrane Transport Proteins/chemistry ; Molecular Dynamics Simulation ; Phosphatidylglycerols/chemistry ; Protein Conformation ; Substrate Specificity
Czasopismo naukowe
Tytuł :
Structure and Mechanism of DHHC Protein Acyltransferases.
Autorzy :
Stix R; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Lee CJ; Unit on Structural and Chemical Biology of Membrane Proteins, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Faraldo-Gómez JD; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Banerjee A; Unit on Structural and Chemical Biology of Membrane Proteins, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: .
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Źródło :
Journal of molecular biology [J Mol Biol] 2020 Aug 21; Vol. 432 (18), pp. 4983-4998. Date of Electronic Publication: 2020 Jun 06.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural; Review
MeSH Terms :
Acyltransferases/*chemistry
Acyltransferases/*metabolism
Acylation ; Crystallography, X-Ray ; Humans ; Models, Molecular ; Protein Domains ; Protein Processing, Post-Translational
Czasopismo naukowe
Tytuł :
Bedaquiline inhibits the yeast and human mitochondrial ATP synthases.
Autorzy :
Luo M; Department of Cell Biology, Harvard Medical School, 250 Longwood Avenue, Boston, MA, 02115, USA.
Zhou W; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, 10 Center Drive, Bethesda, MD, 20892, USA.
Patel H; Center for Genetic Diseases, Chicago Medical School, Rosalind Franklin University, 3333 Green Bay Rd, North Chicago, IL, 60064, USA.
Srivastava AP; Center for Genetic Diseases, Chicago Medical School, Rosalind Franklin University, 3333 Green Bay Rd, North Chicago, IL, 60064, USA.
Symersky J; Center for Genetic Diseases, Chicago Medical School, Rosalind Franklin University, 3333 Green Bay Rd, North Chicago, IL, 60064, USA.
Bonar MM; Center for Genetic Diseases, Chicago Medical School, Rosalind Franklin University, 3333 Green Bay Rd, North Chicago, IL, 60064, USA.
Faraldo-Gómez JD; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, 10 Center Drive, Bethesda, MD, 20892, USA. jose.faraldo@nih.gov.
Liao M; Department of Cell Biology, Harvard Medical School, 250 Longwood Avenue, Boston, MA, 02115, USA. .
Mueller DM; Center for Genetic Diseases, Chicago Medical School, Rosalind Franklin University, 3333 Green Bay Rd, North Chicago, IL, 60064, USA. .
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Źródło :
Communications biology [Commun Biol] 2020 Aug 19; Vol. 3 (1), pp. 452. Date of Electronic Publication: 2020 Aug 19.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
New Molecular-Mechanics Model for Simulations of Hydrogen Fluoride in Chemistry and Biology.
Autorzy :
Orabi EA; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, 10 Center Drive, Bethesda, Maryland 20814, United States.
Faraldo-Gómez JD; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, 10 Center Drive, Bethesda, Maryland 20814, United States.
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Źródło :
Journal of chemical theory and computation [J Chem Theory Comput] 2020 Aug 11; Vol. 16 (8), pp. 5105-5126. Date of Electronic Publication: 2020 Jul 21.
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
Structure of Human ATG9A, the Only Transmembrane Protein of the Core Autophagy Machinery.
Autorzy :
Guardia CM; Section on Intracellular Protein Trafficking, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Tan XF; Laboratory of Membrane Proteins and Structural Biology, Biochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Lian T; Laboratory of Membrane Proteins and Structural Biology, Biochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Rana MS; Unit on Structural and Chemical Biology of Membrane Proteins, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Zhou W; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Christenson ET; Unit on Structural and Chemical Biology of Membrane Proteins, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Lowry AJ; Unit on Structural and Chemical Biology of Membrane Proteins, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Faraldo-Gómez JD; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Bonifacino JS; Section on Intracellular Protein Trafficking, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: .
Jiang J; Laboratory of Membrane Proteins and Structural Biology, Biochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: .
Banerjee A; Unit on Structural and Chemical Biology of Membrane Proteins, Neurosciences and Cellular and Structural Biology Division, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: .
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Źródło :
Cell reports [Cell Rep] 2020 Jun 30; Vol. 31 (13), pp. 107837.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
Czasopismo naukowe
Tytuł :
Interpretation of HDX Data by Maximum-Entropy Reweighting of Simulated Structural Ensembles.
Autorzy :
Bradshaw RT; Computational Structural Biology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland.
Marinelli F; Theoretical Molecular Biophysics Unit, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland.
Faraldo-Gómez JD; Theoretical Molecular Biophysics Unit, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland. Electronic address: jose.faraldo@nih.gov.
Forrest LR; Computational Structural Biology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland. Electronic address: .
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Źródło :
Biophysical journal [Biophys J] 2020 Apr 07; Vol. 118 (7), pp. 1649-1664. Date of Electronic Publication: 2020 Feb 15.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
Czasopismo naukowe
Tytuł :
DHHC20 Palmitoyl-Transferase Reshapes the Membrane to Foster Catalysis.
Autorzy :
Stix R; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland; Unit on Structural and Chemical Biology of Membrane Proteins, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland.
Song J; Unit on Structural and Chemical Biology of Membrane Proteins, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland.
Banerjee A; Unit on Structural and Chemical Biology of Membrane Proteins, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland. Electronic address: .
Faraldo-Gómez JD; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland. Electronic address: jose.faraldo@nih.gov.
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Źródło :
Biophysical journal [Biophys J] 2020 Feb 25; Vol. 118 (4), pp. 980-988. Date of Electronic Publication: 2019 Nov 14.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural; Research Support, N.I.H., Extramural
Czasopismo naukowe
Tytuł :
Direct Derivation of Free Energies of Membrane Deformation and Other Solvent Density Variations From Enhanced Sampling Molecular Dynamics.
Autorzy :
Fiorin G; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, 10 Center Drive, Bethesda, Maryland, 20814.
Marinelli F; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, 10 Center Drive, Bethesda, Maryland, 20814.
Faraldo-Gómez JD; Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, 10 Center Drive, Bethesda, Maryland, 20814.
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Źródło :
Journal of computational chemistry [J Comput Chem] 2020 Feb 15; Vol. 41 (5), pp. 449-459. Date of Electronic Publication: 2019 Oct 11.
Typ publikacji :
Journal Article; Research Support, N.I.H., Intramural
Czasopismo naukowe

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