Bacterial bioindicators enable biological status classification along the continental Danube river.
Autorzy:
Fontaine L; Section for Aquatic Biology and Toxicology, Centre for Biogeochemistry in the Anthropocene, Department of Biosciences, University of Oslo, Blindernv. 31, 0371, Oslo, Norway. Pin L; Section for Aquatic Biology and Toxicology, Centre for Biogeochemistry in the Anthropocene, Department of Biosciences, University of Oslo, Blindernv. 31, 0371, Oslo, Norway.; Norsk Institutt for Vannforskning (NIVA) Gaustadalléen 21, 0349, Oslo, Norway. Savio D; Division Water Quality and Health, Department Pharmacology, Physiology and Microbiology, Karl Landsteiner University of Health Sciences, Krems an der Donau, Austria.; Interuniversity Cooperation Centre for Water and Health, Vienna, Austria.; Research Group for Microbiology and Molecular Diagnostics 166/5/3, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria. Friberg N; Norsk Institutt for Vannforskning (NIVA) Gaustadalléen 21, 0349, Oslo, Norway.; Freshwater Biological Section, University of Copenhagen, Universitetsparken 4, Third Floor, 2100, Copenhagen, Denmark.; School of Geography, University of Leeds, Leeds, LS2 9JT, UK. Kirschner AKT; Division Water Quality and Health, Department Pharmacology, Physiology and Microbiology, Karl Landsteiner University of Health Sciences, Krems an der Donau, Austria.; Interuniversity Cooperation Centre for Water and Health, Vienna, Austria.; Medical University Vienna, Institute for Hygiene and Applied Immunology, Water Microbiology, Kinderspitalgasse 15, 1090, Vienna, Austria. FarnleitnerAH; Division Water Quality and Health, Department Pharmacology, Physiology and Microbiology, Karl Landsteiner University of Health Sciences, Krems an der Donau, Austria.; Interuniversity Cooperation Centre for Water and Health, Vienna, Austria.; Research Group for Microbiology and Molecular Diagnostics 166/5/3, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria. Eiler A; Section for Aquatic Biology and Toxicology, Centre for Biogeochemistry in the Anthropocene, Department of Biosciences, University of Oslo, Blindernv. 31, 0371, Oslo, Norway. .; eDNA Solutions AB, Kärrbogata 22, 44196, Alingsås, Sweden. .
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Communications biology [Commun Biol] 2023 Aug 18; Vol. 6 (1), pp. 862. Date of Electronic Publication: 2023 Aug 18.
First report on the occurrence of Vibrio cholerae nonO1/nonO139 in natural and artificial lakes and ponds in Serbia: Evidence for a long-distance transfer of strains and the presence of Vibrio paracholerae.
Autorzy:
Rehm C; Division Water Quality and Health, Department of Physiology, Pharmacology and Microbiology, Karl Landsteiner University of Health Sciences, Krems, Austria.; Institute for Hygiene and Applied Immunology - Water Microbiology, Medical University Vienna, Vienna, Austria.; Interuniversity Cooperation Centre Water & Health, Austria. Lippert K; Institute für Medical Microbiology and Hygiene, Austrian Agency for Health and Food Safety, Vienna, Austria. Indra A; Institute für Medical Microbiology and Hygiene, Austrian Agency for Health and Food Safety, Vienna, Austria. Kolarević S; Institute for Biological Research ¨Siniša Stanković¨, National Institute of the Republic of Serbia, Department for Hydroecology and Water Protection, University of Belgrade, Belgrade, Serbia. Kračun-Kolarević M; Institute for Biological Research ¨Siniša Stanković¨, National Institute of the Republic of Serbia, Department for Hydroecology and Water Protection, University of Belgrade, Belgrade, Serbia. Leopold M; Division Water Quality and Health, Department of Physiology, Pharmacology and Microbiology, Karl Landsteiner University of Health Sciences, Krems, Austria.; Interuniversity Cooperation Centre Water & Health, Austria.; Institute for Chemical, Environmental and Bioscience Engineering, Technische Universität Wien, Vienna, Austria. Steinbacher S; Division Water Quality and Health, Department of Physiology, Pharmacology and Microbiology, Karl Landsteiner University of Health Sciences, Krems, Austria.; Interuniversity Cooperation Centre Water & Health, Austria.; Institute for Chemical, Environmental and Bioscience Engineering, Technische Universität Wien, Vienna, Austria. Schachner I; Institute for Hygiene and Applied Immunology - Water Microbiology, Medical University Vienna, Vienna, Austria.; Interuniversity Cooperation Centre Water & Health, Austria. Campostrini L; Institute for Hygiene and Applied Immunology - Water Microbiology, Medical University Vienna, Vienna, Austria.; Interuniversity Cooperation Centre Water & Health, Austria. Risslegger A; Division Water Quality and Health, Department of Physiology, Pharmacology and Microbiology, Karl Landsteiner University of Health Sciences, Krems, Austria.; Interuniversity Cooperation Centre Water & Health, Austria. FarnleitnerAH; Division Water Quality and Health, Department of Physiology, Pharmacology and Microbiology, Karl Landsteiner University of Health Sciences, Krems, Austria.; Interuniversity Cooperation Centre Water & Health, Austria.; Institute for Chemical, Environmental and Bioscience Engineering, Technische Universität Wien, Vienna, Austria. Kolm C; Division Water Quality and Health, Department of Physiology, Pharmacology and Microbiology, Karl Landsteiner University of Health Sciences, Krems, Austria.; Interuniversity Cooperation Centre Water & Health, Austria.; Institute for Chemical, Environmental and Bioscience Engineering, Technische Universität Wien, Vienna, Austria. Kirschner AKT; Division Water Quality and Health, Department of Physiology, Pharmacology and Microbiology, Karl Landsteiner University of Health Sciences, Krems, Austria.; Institute for Hygiene and Applied Immunology - Water Microbiology, Medical University Vienna, Vienna, Austria.; Interuniversity Cooperation Centre Water & Health, Austria.
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Environmental microbiology reports [Environ Microbiol Rep] 2023 Apr; Vol. 15 (2), pp. 142-152. Date of Electronic Publication: 2023 Feb 13.
How dead is dead? Viable but non-culturable versus persister cells.
Autorzy:
Kirschner AKT; Medical University Vienna, Institute for Hygiene and Applied Immunology - Water Microbiology, Vienna, A-1090, Austria.; Karl Landsteiner University for Health Sciences, Research Division Water Quality and Health, Krems, A-3500, Austria.; Interuniversity Cooperation Centre Water and Health, www.waterandhealth.at, Austria. Vierheilig J; Karl Landsteiner University for Health Sciences, Research Division Water Quality and Health, Krems, A-3500, Austria.; Interuniversity Cooperation Centre Water and Health, www.waterandhealth.at, Austria. Flemming HC; Singapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, 637551, Singapore.; University of Duisburg-Essen, Biofilm Centre, Universitätsstrasse 5, Essen, 45131, Germany.; Water Academy, Friedrichshafen, 88045, Germany. Wingender J; University of Duisburg-Essen, Biofilm Centre, Universitätsstrasse 5, Essen, 45131, Germany. FarnleitnerAH; Karl Landsteiner University for Health Sciences, Research Division Water Quality and Health, Krems, A-3500, Austria.; Interuniversity Cooperation Centre Water and Health, www.waterandhealth.at, Austria.; Technische Universität Wien, Institute of Chemical, Environmental and Bioscience Engineering, Vienna, A-1060, Austria.
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Environmental microbiology reports [Environ Microbiol Rep] 2021 Jun; Vol. 13 (3), pp. 243-245. Date of Electronic Publication: 2021 Apr 26.
DNA aptamers against bacterial cells can be efficiently selected by a SELEX process using state-of-the art qPCR and ultra-deep sequencing.
Autorzy:
Kolm C; Molecular Diagnostics Group, Department IFA-Tulln, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Tulln, Austria.; ICC Interuniversity Cooperation Centre Water and Health, Vienna, Austria. Cervenka I; Molecular Diagnostics Group, Department IFA-Tulln, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Tulln, Austria.; ICC Interuniversity Cooperation Centre Water and Health, Vienna, Austria. Aschl UJ; Molecular Diagnostics Group, Department IFA-Tulln, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Tulln, Austria.; ICC Interuniversity Cooperation Centre Water and Health, Vienna, Austria. Baumann N; Molecular Diagnostics Group, Department IFA-Tulln, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Tulln, Austria.; ICC Interuniversity Cooperation Centre Water and Health, Vienna, Austria. Jakwerth S; ICC Interuniversity Cooperation Centre Water and Health, Vienna, Austria.; Institute for Hygiene and Applied Immunology, Medical University Vienna, Vienna, Austria. Krska R; Institute of Bioanalytics and Agro-Metabolomics, Department IFA-Tulln, University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria.; School of Biological Sciences, Institute for Global Food Security, Queen's University Belfast, Belfast, Northern Ireland, UK. Mach RL; Research Group Synthetic Biology and Molecular Biotechnology (166-5-1), Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria. Sommer R; ICC Interuniversity Cooperation Centre Water and Health, Vienna, Austria.; Institute for Hygiene and Applied Immunology, Medical University Vienna, Vienna, Austria. DeRosa MC; Department of Chemistry, Carleton University, Ottawa, Canada. Kirschner AKT; ICC Interuniversity Cooperation Centre Water and Health, Vienna, Austria.; Institute for Hygiene and Applied Immunology, Medical University Vienna, Vienna, Austria.; Research Unit Water Quality and Health, Department Physiology, Pharmacology and Microbiology, Karl Landsteiner University of Health Sciences, Krems, Austria. FarnleitnerAH; ICC Interuniversity Cooperation Centre Water and Health, Vienna, Austria.; Research Unit Water Quality and Health, Department Physiology, Pharmacology and Microbiology, Karl Landsteiner University of Health Sciences, Krems, Austria.; Research Group Environmental Microbiology and Molecular Diagnostics (166-5-3), Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria. Reischer GH; Molecular Diagnostics Group, Department IFA-Tulln, Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Tulln, Austria. .; ICC Interuniversity Cooperation Centre Water and Health, Vienna, Austria. .; Research Group Environmental Microbiology and Molecular Diagnostics (166-5-3), Institute of Chemical, Environmental and Bioscience Engineering, TU Wien, Vienna, Austria. .
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Scientific reports [Sci Rep] 2020 Dec 01; Vol. 10 (1), pp. 20917. Date of Electronic Publication: 2020 Dec 01.
Simple lysis of bacterial cells for DNA-based diagnostics using hydrophilic ionic liquids.
Autorzy:
Martzy R; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Molecular Diagnostics Group, Department of Agrobiotechnology (IFA-Tulln), Tulln, Austria.; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria. Bica-Schröder K; TU Wien, Institute of Applied Synthetic Chemistry, Research Group for Sustainable Organic Synthesis and Catalysis, Vienna, Austria. Pálvölgyi ÁM; TU Wien, Institute of Applied Synthetic Chemistry, Research Group for Sustainable Organic Synthesis and Catalysis, Vienna, Austria. Kolm C; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Molecular Diagnostics Group, Department of Agrobiotechnology (IFA-Tulln), Tulln, Austria.; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria. Jakwerth S; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria.; Medical University Vienna, Institute for Hygiene and Applied Immunology, Unit Water Hygiene, Vienna, Austria. Kirschner AKT; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria.; Medical University Vienna, Institute for Hygiene and Applied Immunology, Unit Water Hygiene, Vienna, Austria.; Karl Landsteiner University of Health Sciences, Department for Pharmacology, Physiology and Microbiology, Research Area Water Quality and Health, Krems, Austria. Sommer R; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria.; Medical University Vienna, Institute for Hygiene and Applied Immunology, Unit Water Hygiene, Vienna, Austria. Krska R; University of Natural Resources and Life Sciences Vienna (BOKU), Department of Agrobiotechnology (IFA-Tulln), Tulln, Austria.; Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, Northern Ireland, United Kingdom. Mach RL; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Research Area Biochemical Technology 166/5, Vienna, Austria. FarnleitnerAH; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria.; Karl Landsteiner University of Health Sciences, Department for Pharmacology, Physiology and Microbiology, Research Area Water Quality and Health, Krems, Austria.; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Research Area Biochemical Technology, Research Group of Environmental Microbiology and Molecular Diagnostics, Vienna, Austria. Reischer GH; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Molecular Diagnostics Group, Department of Agrobiotechnology (IFA-Tulln), Tulln, Austria. .; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Research Area Biochemical Technology, Research Group of Environmental Microbiology and Molecular Diagnostics, Vienna, Austria. .
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Scientific reports [Sci Rep] 2019 Sep 30; Vol. 9 (1), pp. 13994. Date of Electronic Publication: 2019 Sep 30.
Challenges and perspectives in the application of isothermal DNA amplification methods for food and water analysis.
Autorzy:
Martzy R; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Molecular Diagnostics Group, Department of Agrobiotechnology (IFA-Tulln), 3430, Tulln, Austria.; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria. Kolm C; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Molecular Diagnostics Group, Department of Agrobiotechnology (IFA-Tulln), 3430, Tulln, Austria.; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria. Krska R; University of Natural Resources and Life Sciences, Vienna (BOKU), Department of Agrobiotechnology (IFA-Tulln), Konrad-Lorenz-Str. 20, 3430, Tulln, Austria.; Queen's University Belfast, Institute for Global Food Security, School of Biological Sciences, Belfast, Northern Ireland, BT71NN, UK. Mach RL; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Research Area Biochemical Technology, Research Group of Synthetic Biology and Molecular Biotechnology, 1060, Vienna, Austria. FarnleitnerAH; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria.; Karl Landsteiner University of Health Sciences, Research Unit Water Quality and Health, 3500, Krems, Austria.; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Research Area Biochemical Technology, Research Group of Environmental Microbiology and Molecular Diagnostics, 1060, Vienna, Austria. Reischer GH; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Molecular Diagnostics Group, Department of Agrobiotechnology (IFA-Tulln), 3430, Tulln, Austria. .; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Research Area Biochemical Technology, Research Group of Environmental Microbiology and Molecular Diagnostics, 1060, Vienna, Austria. .
Detection of a microbial source tracking marker by isothermal helicase-dependent amplification and a nucleic acid lateral-flow strip test.
Autorzy:
Kolm C; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Molecular Diagnostics Group, Department IFA-Tulln, Tulln, Austria.; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria. Martzy R; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Molecular Diagnostics Group, Department IFA-Tulln, Tulln, Austria.; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria. Führer M; University of Natural Resources and Life Sciences, Vienna (BOKU), Department IFA-Tulln, Center for Analytical Chemistry, Tulln, Austria. Mach RL; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Research Division Biochemical Technology, Research Group Synthetic Biology and Molecular Biotechnology, Vienna, Austria. Krska R; University of Natural Resources and Life Sciences, Vienna (BOKU), Department IFA-Tulln, Center for Analytical Chemistry, Tulln, Austria.; Queen's University Belfast, School of Biological Sciences, Institute for Global Food Security, Belfast, Northern Ireland, United Kingdom. Baumgartner S; University of Natural Resources and Life Sciences, Vienna (BOKU), Department IFA-Tulln, Center for Analytical Chemistry, Tulln, Austria. FarnleitnerAH; ICC Interuniversity Cooperation Centre Water & Health, Vienna, Austria.; Karl Landsteiner University of Health Sciences, Research Unit Water Quality and Health, Krems, Austria.; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Research Division Biochemical Technology, Research Group of Environmental Microbiology and Molecular Diagnostics, Vienna, Austria. Reischer GH; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Molecular Diagnostics Group, Department IFA-Tulln, Tulln, Austria. .; TU Wien, Institute of Chemical, Environmental & Bioscience Engineering, Research Division Biochemical Technology, Research Group of Environmental Microbiology and Molecular Diagnostics, Vienna, Austria. .
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Scientific reports [Sci Rep] 2019 Jan 23; Vol. 9 (1), pp. 393. Date of Electronic Publication: 2019 Jan 23.
Opening the black box of spring water microbiology from alpine karst aquifers to support proactive drinking water resource management.
Autorzy:
Savio D; Division Water Quality and Health Department Pharmacology, Physiology and Microbiology, Karl Landsteiner University of Health Sciences Krems a. d. Donau Austria.; Centre for Water Resource Systems Technische Universität Wien Vienna Austria. Stadler P; Centre for Water Resource Systems Technische Universität Wien Vienna Austria.; Institute for Water Quality, Resource and Waste Management Technische Universität Wien Vienna Austria. Reischer GH; Institute of Chemical, Environmental & Bioscience Engineering, Research Group Environmental Microbiology and Molecular Diagnostics 166/5/3, Technische Universität Wien Vienna Austria.; Interuniversity Cooperation Centre for Water and Health, www.waterandhealth.at. Kirschner AKT; Interuniversity Cooperation Centre for Water and Health, www.waterandhealth.at.; Unit Water Hygiene, Institute for Hygiene and Applied Immunology Medical University of Vienna Vienna Austria. Demeter K; Centre for Water Resource Systems Technische Universität Wien Vienna Austria.; Institute of Chemical, Environmental & Bioscience Engineering, Research Group Environmental Microbiology and Molecular Diagnostics 166/5/3, Technische Universität Wien Vienna Austria. Linke R; Institute of Chemical, Environmental & Bioscience Engineering, Research Group Environmental Microbiology and Molecular Diagnostics 166/5/3, Technische Universität Wien Vienna Austria.; Interuniversity Cooperation Centre for Water and Health, www.waterandhealth.at. Blaschke AP; Centre for Water Resource Systems Technische Universität Wien Vienna Austria.; Interuniversity Cooperation Centre for Water and Health, www.waterandhealth.at.; Institute of Hydraulic Engineering and Water Resources Management Technische Universität Wien Vienna Austria. Sommer R; Interuniversity Cooperation Centre for Water and Health, www.waterandhealth.at.; Unit Water Hygiene, Institute for Hygiene and Applied Immunology Medical University of Vienna Vienna Austria. Szewzyk U; Department of Environmental Technology Technical University of Berlin Berlin Germany. Wilhartitz IC; Department of Environmental Microbiology Eawag, Swiss Federal Institute of Aquatic Science and Technology Dübendorf Switzerland. Mach RL; Institute of Chemical, Environmental & Bioscience Engineering, Research Group Environmental Microbiology and Molecular Diagnostics 166/5/3, Technische Universität Wien Vienna Austria. Stadler H; Department for Water Resources Management and Environmental Analytics Institute for Water, Energy and Sustainability, Joanneum Research, Graz Austria. FarnleitnerAH; Division Water Quality and Health Department Pharmacology, Physiology and Microbiology, Karl Landsteiner University of Health Sciences Krems a. d. Donau Austria.; Institute of Chemical, Environmental & Bioscience Engineering, Research Group Environmental Microbiology and Molecular Diagnostics 166/5/3, Technische Universität Wien Vienna Austria.; Interuniversity Cooperation Centre for Water and Health, www.waterandhealth.at.
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WIREs. Water [WIREs Water] 2018 May-Jun; Vol. 5 (3), pp. e1282. Date of Electronic Publication: 2018 Mar 09.
Enterobacteriaceae Isolated from the River Danube: Antibiotic Resistances, with a Focus on the Presence of ESBL and Carbapenemases.
Autorzy:
Kittinger C; Institute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria. Lipp M; Institute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria. Folli B; Institute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria. Kirschner A; Institute for Hygiene and Applied Immunology, Water Hygiene, Medical University of Vienna, Vienna, Austria.; Interuniversity Cooperation Centre for Water and Health. Baumert R; Institute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria. Galler H; Institute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria. Grisold AJ; Institute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria. Luxner J; Institute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria. Weissenbacher M; Institute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria. FarnleitnerAH; Interuniversity Cooperation Centre for Water and Health.; Institute of Chemical Engineering, Research Group Environmental Microbiology and Molecular Ecology, Vienna University of Technology, Vienna, Austria. Zarfel G; Institute of Hygiene, Microbiology and Environmental Medicine, Medical University Graz, Graz, Austria.
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PloS one [PLoS One] 2016 Nov 03; Vol. 11 (11), pp. e0165820. Date of Electronic Publication: 2016 Nov 03 (Print Publication: 2016).
Response to letter to the editor regarding "detection of the 35S promoter in transgenic maize via various isothermal amplification techniques: a practical approach".
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