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You search for a phrase ""Folding"" according to the criterion: Subject Terms


Title:
Most Monogenic Disorders Are Caused by Mutations Altering Protein Folding Free Energy.
Authors:
Pandey P; Department of Physics and Astronomy, Clemson University, Clemson, SC 29634, USA.
Alexov E; Department of Physics and Astronomy, Clemson University, Clemson, SC 29634, USA.
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Source:
International journal of molecular sciences [Int J Mol Sci] 2024 Feb 06; Vol. 25 (4). Date of Electronic Publication: 2024 Feb 06.
Publication Type:
Journal Article
MeSH Terms:
Proteins*/chemistry
Protein Folding*
Thermodynamics ; Mutation ; Protein Stability ; Amino Acids/genetics
Academic Journal
Title:
It is theoretically possible to avoid misfolding into non-covalent lasso entanglements using small molecule drugs.
Authors:
Jiang Y; Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania, United States of America.
Deane CM; Oxford Protein Informatics Group, Department of Statistics, University of Oxford, 24-29 St Giles' Oxford, OX1 3LB United Kingdom.
Morris GM; Oxford Protein Informatics Group, Department of Statistics, University of Oxford, 24-29 St Giles' Oxford, OX1 3LB United Kingdom.
O'Brien EP; Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania, United States of America.; Bioinformatics and Genomics Graduate Program, The Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania, United States of America.; Institute for Computational and Data Sciences, Pennsylvania State University, University Park, Pennsylvania, United States of America.
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Source:
PLoS computational biology [PLoS Comput Biol] 2024 Mar 12; Vol. 20 (3), pp. e1011901. Date of Electronic Publication: 2024 Mar 12 (Print Publication: 2024).
Publication Type:
Journal Article
MeSH Terms:
Protein Folding*
Proteins*/chemistry
Computer Simulation ; Software ; Mass Spectrometry
Academic Journal
Title:
A Kinetic Transition Network Model Reveals the Diversity of Protein Dimer Formation Mechanisms.
Authors:
Györffy D; Systems Biology of Reproduction Research Group, Institute of Enzymology, HUN-REN Research Centre for Natural Sciences, 1117 Budapest, Hungary.; Faculty of Information Technology and Bionics, Pázmány Péter Catholic University, 1083 Budapest, Hungary.
Závodszky P; Structural Biophysics Research Group, Institute of Enzymology, HUN-REN Research Centre for Natural Sciences, 1117 Budapest, Hungary.
Szilágyi A; Systems Biology of Reproduction Research Group, Institute of Enzymology, HUN-REN Research Centre for Natural Sciences, 1117 Budapest, Hungary.
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Source:
Biomolecules [Biomolecules] 2023 Nov 26; Vol. 13 (12). Date of Electronic Publication: 2023 Nov 26.
Publication Type:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Protein Folding*
Proteins*/chemistry
Molecular Conformation ; Protein Biosynthesis ; Kinetics ; Thermodynamics
Academic Journal
Title:
Conformational Stability of the N-Terminal Region of MDM2.
Authors:
Rizzuti B; CNR-NANOTEC, SS Rende (CS), Department of Physics, University of Calabria, 87036 Rende, Italy.; Instituto de Biocomputación y Física de Sistemas Complejos (BIFI)-Unidad mixta GBsC-CSIC-BIFI, Universidad de Zaragoza, 50018 Zaragoza, Spain.
Abian O; Instituto de Biocomputación y Física de Sistemas Complejos (BIFI)-Unidad mixta GBsC-CSIC-BIFI, Universidad de Zaragoza, 50018 Zaragoza, Spain.; Instituto de Investigación Sanitaria Aragón (IIS Aragón), 50009 Zaragoza, Spain.; Centro de Investigación Biomédica en Red en el Área Temática de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029 Madrid, Spain.; Departamento de Bioquímica y Biología Molecular y Celular, Universidad de Zaragoza, 50009 Zaragoza, Spain.
Velazquez-Campoy A; Instituto de Biocomputación y Física de Sistemas Complejos (BIFI)-Unidad mixta GBsC-CSIC-BIFI, Universidad de Zaragoza, 50018 Zaragoza, Spain.; Instituto de Investigación Sanitaria Aragón (IIS Aragón), 50009 Zaragoza, Spain.; Centro de Investigación Biomédica en Red en el Área Temática de Enfermedades Hepáticas y Digestivas (CIBERehd), 28029 Madrid, Spain.; Departamento de Bioquímica y Biología Molecular y Celular, Universidad de Zaragoza, 50009 Zaragoza, Spain.
Neira JL; Instituto de Biocomputación y Física de Sistemas Complejos (BIFI)-Unidad mixta GBsC-CSIC-BIFI, Universidad de Zaragoza, 50018 Zaragoza, Spain.; Instituto de Investigación, Desarrollo e Innovación en Biotecnología Sanitaria de Elche (IDIBE), Universidad Miguel Hernández, 03202 Elche, Spain.
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Source:
Molecules (Basel, Switzerland) [Molecules] 2023 Nov 14; Vol. 28 (22). Date of Electronic Publication: 2023 Nov 14.
Publication Type:
Journal Article
MeSH Terms:
Protein Folding*
Tumor Suppressor Protein p53*
Protein Denaturation ; Protein Conformation ; Circular Dichroism ; Hydrogen-Ion Concentration ; Spectrometry, Fluorescence ; Calorimetry, Differential Scanning
Academic Journal
Title:
Folding kinetics of an entangled protein.
Authors:
Salicari L; Department of Physics and Astronomy 'G. Galilei', University of Padova, Padova, Italy.; National Institute of Nuclear Physics (INFN), Padova Section, Padova, Italy.
Baiesi M; Department of Physics and Astronomy 'G. Galilei', University of Padova, Padova, Italy.; National Institute of Nuclear Physics (INFN), Padova Section, Padova, Italy.
Orlandini E; Department of Physics and Astronomy 'G. Galilei', University of Padova, Padova, Italy.; National Institute of Nuclear Physics (INFN), Padova Section, Padova, Italy.
Trovato A; Department of Physics and Astronomy 'G. Galilei', University of Padova, Padova, Italy.; National Institute of Nuclear Physics (INFN), Padova Section, Padova, Italy.
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Source:
PLoS computational biology [PLoS Comput Biol] 2023 Nov 13; Vol. 19 (11), pp. e1011107. Date of Electronic Publication: 2023 Nov 13 (Print Publication: 2023).
Publication Type:
Journal Article
MeSH Terms:
Protein Folding*
Proteins*/chemistry
Physics ; Kinetics ; Protein Conformation
Academic Journal
Title:
Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability.
Authors:
Sapozhnikov Y; Program in Bioinformatics and Computational Biology, University of Idaho, Moscow, ID, 83844, USA.
Patel JS; Department of Chemical and Biological Engineering, University of Idaho, Moscow, ID, 83844, USA.; Institute for Modeling Collaboration and Innovation, University of Idaho, Moscow, ID, 83844, USA.
Ytreberg FM; Department of Physics, University of Idaho, Moscow, ID, 83844, USA.; Institute for Modeling Collaboration and Innovation, University of Idaho, Moscow, ID, 83844, USA.
Miller CR; Department of Biological Sciences, University of Idaho, Moscow, ID, 83844, USA. .; Institute for Modeling Collaboration and Innovation, University of Idaho, Moscow, ID, 83844, USA. .
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Source:
BMC bioinformatics [BMC Bioinformatics] 2023 Nov 12; Vol. 24 (1), pp. 426. Date of Electronic Publication: 2023 Nov 12.
Publication Type:
Journal Article
MeSH Terms:
Protein Folding*
Mutation, Missense*
Uncertainty ; Mutation ; Molecular Dynamics Simulation ; Protein Stability ; Protein Binding
Academic Journal
Title:
AlphaFold Blindness to Topological Barriers Affects Its Ability to Correctly Predict Proteins' Topology.
Authors:
Dabrowski-Tumanski P; Faculty of Mathematics and Natural Sciences, School of Exact Sciences, Cardinal Wyszynski University in Warsaw, Wóycickiego 1/3, 01-938 Warsaw, Poland.
Stasiak A; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
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Source:
Molecules (Basel, Switzerland) [Molecules] 2023 Nov 07; Vol. 28 (22). Date of Electronic Publication: 2023 Nov 07.
Publication Type:
Journal Article
MeSH Terms:
Proteins*/chemistry
Protein Folding*
Protein Conformation ; Models, Molecular ; Peptides
Academic Journal
Title:
PON-Fold: Prediction of Substitutions Affecting Protein Folding Rate.
Authors:
Yang Y; School of Computer Science and Technology, Soochow University, Suzhou 215006, China.; Collaborative Innovation Center of Novel Software Technology and Industrialization, Nanjing 210000, China.
Chong Z; School of Computer Science and Technology, Soochow University, Suzhou 215006, China.
Vihinen M; Department of Experimental Medical Science, Lund University, BMC B13, SE-221 84 Lund, Sweden.
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Source:
International journal of molecular sciences [Int J Mol Sci] 2023 Aug 21; Vol. 24 (16). Date of Electronic Publication: 2023 Aug 21.
Publication Type:
Journal Article
MeSH Terms:
Algorithms*
Protein Folding*
Amino Acid Substitution ; Correlation of Data
Academic Journal
Title:
Einstein Model of a Graph to Characterize Protein Folded/Unfolded States.
Authors:
Tyler S; Laboratoire Interdisciplinaire Carnot de Bourgogne, UMR CNRS 6303, Université de Bourgogne, 21078 Dijon CEDEX, France.
Laforge C; Laboratoire Interdisciplinaire Carnot de Bourgogne, UMR CNRS 6303, Université de Bourgogne, 21078 Dijon CEDEX, France.
Guzzo A; Laboratoire Interdisciplinaire Carnot de Bourgogne, UMR CNRS 6303, Université de Bourgogne, 21078 Dijon CEDEX, France.
Nicolaï A; Laboratoire Interdisciplinaire Carnot de Bourgogne, UMR CNRS 6303, Université de Bourgogne, 21078 Dijon CEDEX, France.
Maisuradze GG; Baker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Senet P; Laboratoire Interdisciplinaire Carnot de Bourgogne, UMR CNRS 6303, Université de Bourgogne, 21078 Dijon CEDEX, France.
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Source:
Molecules (Basel, Switzerland) [Molecules] 2023 Sep 16; Vol. 28 (18). Date of Electronic Publication: 2023 Sep 16.
Publication Type:
Journal Article
MeSH Terms:
Proteins*/chemistry
Protein Folding*
Amino Acid Sequence ; Molecular Dynamics Simulation
Academic Journal
Title:
Molecular Dynamics Mappings of the CCT/TRiC Complex-Mediated Protein Folding Cycle Using Diffracted X-ray Tracking.
Authors:
Araki K; AIST-UTokyo Advanced Operando-Measurement Technology Open Innovation Laboratory (OPERANDO-OIL), National Institute of Advanced Industrial Science and Technology (AIST), 6-2-3 Kashiwanoha, Chiba 277-0882, Japan.
Watanabe-Nakayama T; WPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.
Sasaki D; Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Chiba 277-8561, Japan.
Sasaki YC; Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Chiba 277-8561, Japan.
Mio K; AIST-UTokyo Advanced Operando-Measurement Technology Open Innovation Laboratory (OPERANDO-OIL), National Institute of Advanced Industrial Science and Technology (AIST), 6-2-3 Kashiwanoha, Chiba 277-0882, Japan.
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Source:
International journal of molecular sciences [Int J Mol Sci] 2023 Oct 03; Vol. 24 (19). Date of Electronic Publication: 2023 Oct 03.
Publication Type:
Journal Article
MeSH Terms:
Molecular Dynamics Simulation*
Protein Folding*
Animals ; X-Rays ; Group II Chaperonins/chemistry ; Group II Chaperonins/metabolism ; Chaperonins/metabolism ; Adenosine Triphosphate/metabolism ; Nucleotides ; Chaperonin Containing TCP-1/chemistry ; Protein Conformation ; Mammals/metabolism
Academic Journal
Title:
The New Functional Hybrid Chaperone Protein ADGroEL-SacSm.
Authors:
Mikhaylina A; Institute of Protein Research, Russian Academy of Sciences, Institutskaya Str. 4, 142290 Pushchino, Russia.
Lekontseva N; Institute of Protein Research, Russian Academy of Sciences, Institutskaya Str. 4, 142290 Pushchino, Russia.
Marchenkov V; Institute of Protein Research, Russian Academy of Sciences, Institutskaya Str. 4, 142290 Pushchino, Russia.
Kolesnikova V; Institute of Protein Research, Russian Academy of Sciences, Institutskaya Str. 4, 142290 Pushchino, Russia.
Khairetdinova A; Institute of Protein Research, Russian Academy of Sciences, Institutskaya Str. 4, 142290 Pushchino, Russia.
Nikonov O; Institute of Protein Research, Russian Academy of Sciences, Institutskaya Str. 4, 142290 Pushchino, Russia.
Balobanov V; Institute of Protein Research, Russian Academy of Sciences, Institutskaya Str. 4, 142290 Pushchino, Russia.
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Source:
Molecules (Basel, Switzerland) [Molecules] 2023 Aug 23; Vol. 28 (17). Date of Electronic Publication: 2023 Aug 23.
Publication Type:
Journal Article
MeSH Terms:
Molecular Chaperones*
Protein Folding*
Chaperonin 60 ; Engineering ; Hot Temperature
Academic Journal
Title:
Entangled Motifs in Membrane Protein Structures.
Authors:
Salicari L; Department of Physics and Astronomy 'Galileo Galilei', University of Padova, Via Marzolo 8, 35031 Padova, PD, Italy.; National Institute of Nuclear Physics (INFN), Padova Section, Via Marzolo 8, 35131 Padova, PD, Italy.
Trovato A; Department of Physics and Astronomy 'Galileo Galilei', University of Padova, Via Marzolo 8, 35031 Padova, PD, Italy.; National Institute of Nuclear Physics (INFN), Padova Section, Via Marzolo 8, 35131 Padova, PD, Italy.
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Source:
International journal of molecular sciences [Int J Mol Sci] 2023 May 24; Vol. 24 (11). Date of Electronic Publication: 2023 May 24.
Publication Type:
Journal Article
MeSH Terms:
Membrane Proteins*/chemistry
Protein Folding*
Amino Acid Motifs
Academic Journal
Title:
Pathway and mechanism of tubulin folding mediated by TRiC/CCT along its ATPase cycle revealed using cryo-EM.
Authors:
Liu C; State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.; University of Chinese Academy of Sciences, 100049, Beijing, China.
Jin M; State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.
Wang S; State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.; University of Chinese Academy of Sciences, 100049, Beijing, China.
Han W; State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.; University of Chinese Academy of Sciences, 100049, Beijing, China.
Zhao Q; State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.; University of Chinese Academy of Sciences, 100049, Beijing, China.
Wang Y; State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.; University of Chinese Academy of Sciences, 100049, Beijing, China.
Xu C; State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.; University of Chinese Academy of Sciences, 100049, Beijing, China.
Diao L; State Key Laboratory of Cell Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.
Yin Y; National Facility for Protein Science in Shanghai, Zhangjiang Lab, Shanghai Advanced Research Institute, CAS, 201210, Shanghai, China.
Peng C; National Facility for Protein Science in Shanghai, Zhangjiang Lab, Shanghai Advanced Research Institute, CAS, 201210, Shanghai, China.
Bao L; University of Chinese Academy of Sciences, 100049, Beijing, China.; State Key Laboratory of Cell Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.
Wang Y; State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China.
Cong Y; State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, 200031, Shanghai, China. .; University of Chinese Academy of Sciences, 100049, Beijing, China. .
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Source:
Communications biology [Commun Biol] 2023 May 16; Vol. 6 (1), pp. 531. Date of Electronic Publication: 2023 May 16.
Publication Type:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Adenosine Triphosphatases*/metabolism
Protein Folding*
Humans ; Tubulin/metabolism ; Cryoelectron Microscopy ; Models, Molecular
Academic Journal
Title:
Rethinking the protein folding problem from a new perspective.
Authors:
Vila JA; IMASL-CONICET, Universidad Nacional de San Luis, Ejército de Los Andes 950, 5700, San Luis, Argentina. .
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Source:
European biophysics journal : EBJ [Eur Biophys J] 2023 Apr; Vol. 52 (3), pp. 189-193. Date of Electronic Publication: 2023 May 10.
Publication Type:
Journal Article
MeSH Terms:
Protein Folding*
Proteins*/chemistry
Molecular Conformation ; Amino Acid Sequence ; Thermodynamics ; Protein Conformation
Academic Journal

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