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Wyszukujesz frazę ""Frameshifting, Ribosomal"" wg kryterium: Temat


Tytuł:
PRFect: a tool to predict programmed ribosomal frameshifts in prokaryotic and viral genomes.
Autorzy:
McNair K; Computational Science Research Center, San Diego State University, San Diego, CA, USA. .; Department of Computational Science, University of California Irvine, Irvine, CA, USA. .
Salamon P; Computational Science Research Center, San Diego State University, San Diego, CA, USA.; Department of Mathematics and Statistics, San Diego State University, San Diego, CA, USA.
Edwards RA; College of Science and Engineering, Flinders University, Bedford Park, Adelaide, SA, 5042, Australia.
Segall AM; Computational Science Research Center, San Diego State University, San Diego, CA, USA.; Department of Biology and Viral Information Institute, San Diego State University, San Diego, CA, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 22; Vol. 25 (1), pp. 82. Date of Electronic Publication: 2024 Feb 22.
Typ publikacji:
Journal Article
MeSH Terms:
Frameshifting, Ribosomal*
Protein Biosynthesis*
Codon, Terminator/genetics ; Genome, Viral ; Amino Acids
Czasopismo naukowe
Tytuł:
The Deficiency of Hypusinated eIF5A Decreases the Putrescine/Spermidine Ratio and Inhibits +1 Programmed Ribosomal Frameshifting during the Translation of Ty1 Retrotransposon in Saccharomyces cerevisiae .
Autorzy:
Xiao Y; Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan 030006, China.; Shanxi Key Laboratory of Biotechnology, Taiyuan 030006, China.
Wang R; Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan 030006, China.; Shanxi Key Laboratory of Biotechnology, Taiyuan 030006, China.
Han X; Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan 030006, China.; Shanxi Key Laboratory of Biotechnology, Taiyuan 030006, China.
Wang W; Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan 030006, China.; Shanxi Key Laboratory of Biotechnology, Taiyuan 030006, China.
Liang A; Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Biotechnology, Shanxi University, Taiyuan 030006, China.; Shanxi Key Laboratory of Biotechnology, Taiyuan 030006, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Feb 01; Vol. 25 (3). Date of Electronic Publication: 2024 Feb 01.
Typ publikacji:
Journal Article
MeSH Terms:
Saccharomyces cerevisiae*/genetics
Saccharomyces cerevisiae*/metabolism
Frameshifting, Ribosomal*
Spermidine/metabolism ; Putrescine/metabolism ; Retroelements/genetics ; Codon, Terminator/genetics ; Codon, Terminator/metabolism ; Peptide Initiation Factors/genetics ; Peptide Initiation Factors/metabolism
Czasopismo naukowe
Tytuł:
ORFeus: a computational method to detect programmed ribosomal frameshifts and other non-canonical translation events.
Autorzy:
Richardson MO; Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA.
Eddy SR; Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA. .; Howard Hughes Medical Institute, Harvard University, Cambridge, MA, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Dec 13; Vol. 24 (1), pp. 471. Date of Electronic Publication: 2023 Dec 13.
Typ publikacji:
Journal Article
MeSH Terms:
Frameshifting, Ribosomal*
Ribosomes*/genetics
Ribosomes*/metabolism
Codon, Terminator/genetics ; Open Reading Frames ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Protein Biosynthesis
Czasopismo naukowe
Tytuł:
Shiftless Is a Novel Member of the Ribosome Stress Surveillance Machinery That Has Evolved to Play a Role in Innate Immunity and Cancer Surveillance.
Autorzy:
Kelly JA; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
Dinman JD; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
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Źródło:
Viruses [Viruses] 2023 Nov 23; Vol. 15 (12). Date of Electronic Publication: 2023 Nov 23.
Typ publikacji:
Journal Article
MeSH Terms:
Frameshifting, Ribosomal*
Neoplasms*/metabolism
Animals ; Humans ; Ribosomes/metabolism ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Immunity, Innate ; Protein Biosynthesis ; Mammals
Czasopismo naukowe
Tytuł:
Unwinding the SARS-CoV-2 Ribosomal Frameshifting Pseudoknot with LNA and G-Clamp-Modified Phosphorothioate Oligonucleotides Inhibits Viral Replication.
Autorzy:
Knizhnik E; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, 119435 Moscow, Russia.; Department of Biological and Medical Physics, Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia.
Chumakov S; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia.
Svetlova J; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, 119435 Moscow, Russia.
Pavlova I; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, 119435 Moscow, Russia.; Department of Biological and Medical Physics, Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia.
Khodarovich Y; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia.; Research and Educational Resource Center for Cellular Technologies of The Peoples' Friendship University of Russia, 117198 Moscow, Russia.
Brylev V; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia.
Severov V; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, 119435 Moscow, Russia.
Alieva R; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119992 Moscow, Russia.; Raman Spectroscopy Laboratory, Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia.
Kozlovskaya L; Chumakov Scientific Center for Research and Development of Immune-and-Biological Products, Russian Academy of Sciences (Institute of Poliomyelitis), 108819 Moscow, Russia.
Andreev D; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia.; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119992 Moscow, Russia.
Aralov A; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, 119435 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia.
Varizhuk A; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, 119435 Moscow, Russia.; Department of Biological and Medical Physics, Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia.
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Źródło:
Biomolecules [Biomolecules] 2023 Nov 17; Vol. 13 (11). Date of Electronic Publication: 2023 Nov 17.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Frameshifting, Ribosomal*
COVID-19*
Humans ; Phosphorothioate Oligonucleotides/pharmacology ; SARS-CoV-2/metabolism ; RNA, Viral/metabolism ; Antiviral Agents/pharmacology ; DNA/metabolism ; Virus Replication ; Nucleic Acid Conformation
Czasopismo naukowe
Tytuł:
Mosaic translation hypothesis: chimeric polypeptides produced via multiple ribosomal frameshifting as a basis for adaptability.
Autorzy:
Çakır U; Molecular Biology and Genetics Department, Faculty of Arts and Sciences, Boğaziçi University, Istanbul, Turkey.
Gabed N; Cellular and Molecular Biology Department, Oran High School of Biological Sciences (ESSBO), Oran, Algeria.
Brunet M; Department of Pediatrics, Medical Genetics Service, Université de Sherbrooke, QC, Canada.; Centre de Recherche du Centre Hospitalier Universitaire de Sherbrooke (CRCHUS), QC, Canada.
Roucou X; Centre de Recherche du Centre Hospitalier Universitaire de Sherbrooke (CRCHUS), QC, Canada.; Department of Biochemistry and Functional Genomics, Université de Sherbrooke, QC, Canada.
Kryvoruchko I; Molecular Biology and Genetics Department, Faculty of Arts and Sciences, Boğaziçi University, Istanbul, Turkey.
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Źródło:
The FEBS journal [FEBS J] 2023 Jan; Vol. 290 (2), pp. 370-378. Date of Electronic Publication: 2021 Nov 17.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Frameshifting, Ribosomal*/genetics
Proteome*/metabolism
Base Sequence ; Peptides/genetics ; Peptides/metabolism ; Ribosomes/genetics ; Ribosomes/metabolism ; Open Reading Frames/genetics ; Protein Biosynthesis/genetics
Czasopismo naukowe
Tytuł:
Research Progress of Porcine Reproductive and Respiratory Syndrome Virus NSP2 Protein.
Autorzy:
Liu B; College of Veterinary Medicine, Northeast Agricultural University, Harbin 150038, China.
Luo L; College of Veterinary Medicine, Northeast Agricultural University, Harbin 150038, China.
Shi Z; College of Veterinary Medicine, Northeast Agricultural University, Harbin 150038, China.
Ju H; Shanghai Animal Disease Prevention and Control Center, Shanghai 201103, China.
Yu L; Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China.
Li G; Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China.
Cui J; College of Veterinary Medicine, Northeast Agricultural University, Harbin 150038, China.
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Źródło:
Viruses [Viruses] 2023 Nov 24; Vol. 15 (12). Date of Electronic Publication: 2023 Nov 24.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Porcine respiratory and reproductive syndrome virus*/genetics
Porcine respiratory and reproductive syndrome virus*/metabolism
Porcine Reproductive and Respiratory Syndrome*
Animals ; Swine ; Viral Nonstructural Proteins/metabolism ; Cell Line ; Gene Expression ; Frameshifting, Ribosomal
Czasopismo naukowe
Tytuł:
Hypusinated eIF5A Promotes Ribosomal Frameshifting during Decoding of ODC Antizyme mRNA in Saccharomyces cerevisiae .
Autorzy:
Halwas K; Center of Molecular Biosciences, Institute for Genetics, Department of Biology, Faculty of Natural Sciences and Mathematics, University of Cologne, 50674 Cologne, Germany.
Döring LM; Center of Molecular Biosciences, Institute for Genetics, Department of Biology, Faculty of Natural Sciences and Mathematics, University of Cologne, 50674 Cologne, Germany.
Oehlert FV; Center of Molecular Biosciences, Institute for Genetics, Department of Biology, Faculty of Natural Sciences and Mathematics, University of Cologne, 50674 Cologne, Germany.
Dohmen RJ; Center of Molecular Biosciences, Institute for Genetics, Department of Biology, Faculty of Natural Sciences and Mathematics, University of Cologne, 50674 Cologne, Germany.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Oct 26; Vol. 23 (21). Date of Electronic Publication: 2022 Oct 26.
Typ publikacji:
Journal Article
MeSH Terms:
Frameshifting, Ribosomal*
Saccharomyces cerevisiae*/genetics
Saccharomyces cerevisiae*/metabolism
RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Ornithine Decarboxylase/genetics ; Ornithine Decarboxylase/metabolism ; Polyamines/metabolism
Czasopismo naukowe
Tytuł:
A Novel Frameshifting Inhibitor Having Antiviral Activity against Zoonotic Coronaviruses.
Autorzy:
Ahn DG; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Yoon GY; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Lee S; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Ku KB; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Kim C; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Kim KD; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Kwon YC; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Kim GW; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Kim BT; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
Kim SJ; Center for Convergent Research of Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea.
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Źródło:
Viruses [Viruses] 2021 Aug 18; Vol. 13 (8). Date of Electronic Publication: 2021 Aug 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Antiviral Agents/*pharmacology
Frameshifting, Ribosomal/*drug effects
Middle East Respiratory Syndrome Coronavirus/*drug effects
Quinolines/*pharmacology
Severe acute respiratory syndrome-related coronavirus/*drug effects
SARS-CoV-2/*drug effects
A549 Cells ; Animals ; Cell Line ; Frameshifting, Ribosomal/physiology ; Humans ; Middle East Respiratory Syndrome Coronavirus/genetics ; Middle East Respiratory Syndrome Coronavirus/physiology ; Severe acute respiratory syndrome-related coronavirus/genetics ; Severe acute respiratory syndrome-related coronavirus/physiology ; SARS-CoV-2/genetics ; SARS-CoV-2/physiology ; Small Molecule Libraries ; Viral Zoonoses/virology ; Virus Replication/drug effects
Czasopismo naukowe
Tytuł:
Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome.
Autorzy:
Bhatt PR; Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.; School of Biochemistry and Cell Biology, University College Cork, Cork T12 XF62, Ireland.; School of Microbiology, University College Cork, Cork T12 K8AF, Ireland.
Scaiola A; Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.
Loughran G; School of Biochemistry and Cell Biology, University College Cork, Cork T12 XF62, Ireland.
Leibundgut M; Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.
Kratzel A; Institute of Virology and Immunology, University of Bern, Bern, Switzerland.; Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.; Graduate School for Cellular and Biomedical Sciences, University of Bern, Bern, Switzerland.
Meurs R; Center for Integrative Genomics, Génopode, University of Lausanne, 1015 Lausanne, Switzerland.
Dreos R; Center for Integrative Genomics, Génopode, University of Lausanne, 1015 Lausanne, Switzerland.
O'Connor KM; School of Biochemistry and Cell Biology, University College Cork, Cork T12 XF62, Ireland.
McMillan A; Laboratorium für Organische Chemie, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.
Bode JW; Laboratorium für Organische Chemie, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.
Thiel V; Institute of Virology and Immunology, University of Bern, Bern, Switzerland.; Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Gatfield D; Center for Integrative Genomics, Génopode, University of Lausanne, 1015 Lausanne, Switzerland.
Atkins JF; School of Biochemistry and Cell Biology, University College Cork, Cork T12 XF62, Ireland. .; School of Microbiology, University College Cork, Cork T12 K8AF, Ireland.; MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.
Ban N; Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland. .
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Źródło:
Science (New York, N.Y.) [Science] 2021 Jun 18; Vol. 372 (6548), pp. 1306-1313. Date of Electronic Publication: 2021 May 13.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Frameshifting, Ribosomal*/drug effects
RNA, Viral/*genetics
Ribosomes/*ultrastructure
SARS-CoV-2/*genetics
Viral Proteins/*biosynthesis
Animals ; Antiviral Agents/pharmacology ; Codon, Terminator ; Coronavirus RNA-Dependent RNA Polymerase/biosynthesis ; Coronavirus RNA-Dependent RNA Polymerase/chemistry ; Coronavirus RNA-Dependent RNA Polymerase/genetics ; Cryoelectron Microscopy ; Fluoroquinolones/pharmacology ; Genome, Viral ; Humans ; Image Processing, Computer-Assisted ; Models, Molecular ; Nucleic Acid Conformation ; Open Reading Frames ; Protein Folding ; RNA, Messenger/chemistry ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; RNA, Ribosomal, 18S/chemistry ; RNA, Ribosomal, 18S/genetics ; RNA, Ribosomal, 18S/metabolism ; RNA, Viral/chemistry ; RNA, Viral/metabolism ; Ribosomal Proteins/metabolism ; Ribosomes/metabolism ; SARS-CoV-2/drug effects ; SARS-CoV-2/physiology ; Viral Proteins/chemistry ; Viral Proteins/genetics ; Virus Replication/drug effects
Czasopismo naukowe
Tytuł:
Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers.
Autorzy:
Omar SI; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.; Department of Oncology, University of Alberta, Edmonton, Alberta, Canada.
Zhao M; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
Sekar RV; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
Moghadam SA; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
Tuszynski JA; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.; Department of Oncology, University of Alberta, Edmonton, Alberta, Canada.
Woodside MT; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2021 Jan 19; Vol. 17 (1), pp. e1008603. Date of Electronic Publication: 2021 Jan 19 (Print Publication: 2021).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Frameshifting, Ribosomal*
Nucleic Acid Conformation*
SARS-CoV-2/*chemistry
COVID-19/virology ; Computational Biology ; Humans ; SARS-CoV-2/genetics
Czasopismo naukowe
Tytuł:
Molecular Dynamics Simulations Suggest a Non-Doublet Decoding Model of -1 Frameshifting by tRNA .
Autorzy:
Caulfield T; Department of Neuroscience, Mayo Clinic, Jacksonville, FL 32224, USA.
Coban M; Department of Cancer Biology, Mayo Clinic, Jacksonville, FL 32224, USA.
Tek A; Department of Cell and Molecular Biology, Uppsala University, 751 24 Uppsala, Sweden.
Flores SC; Department of Biochemistry and Biophysics, Stockholm University, 10691 Stockholm, Sweden.
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Źródło:
Biomolecules [Biomolecules] 2019 Nov 18; Vol. 9 (11). Date of Electronic Publication: 2019 Nov 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Frameshifting, Ribosomal*
Molecular Dynamics Simulation*
Codon/*chemistry
Escherichia coli/*chemistry
RNA, Bacterial/*chemistry
RNA, Transfer, Ser/*chemistry
Codon/genetics ; Escherichia coli/genetics ; Point Mutation ; RNA, Bacterial/genetics ; RNA, Transfer, Ser/genetics
Czasopismo naukowe
Tytuł:
Nafamostat-Mediated Inhibition of SARS-CoV-2 Ribosomal Frameshifting Is Insufficient to Impair Viral Replication in Vero Cells. Comment on Munshi et al. Identifying Inhibitors of -1 Programmed Ribosomal Frameshifting in a Broad Spectrum of Coronaviruses. Viruses 2022, 14 , 177.
Autorzy:
Jäger N; Infection Biology Unit, German Primate Center-Leibniz Institute for Primate Research, 37077 Göttingen, Germany.; Faculty of Biology and Psychology, Georg-August-University, 37073 Göttingen, Germany.
Hoffmann M; Infection Biology Unit, German Primate Center-Leibniz Institute for Primate Research, 37077 Göttingen, Germany.; Faculty of Biology and Psychology, Georg-August-University, 37073 Göttingen, Germany.
Pöhlmann S; Infection Biology Unit, German Primate Center-Leibniz Institute for Primate Research, 37077 Göttingen, Germany.; Faculty of Biology and Psychology, Georg-August-University, 37073 Göttingen, Germany.
Krüger N; Infection Biology Unit, German Primate Center-Leibniz Institute for Primate Research, 37077 Göttingen, Germany.
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Źródło:
Viruses [Viruses] 2022 Jul 13; Vol. 14 (7). Date of Electronic Publication: 2022 Jul 13.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Comment
MeSH Terms:
COVID-19*
SARS-CoV-2*/genetics
Animals ; Benzamidines ; Chlorocebus aethiops ; Frameshifting, Ribosomal ; Guanidines ; Humans ; Vero Cells ; Virus Replication
Czasopismo naukowe
Tytuł:
mRNA-Mediated Duplexes Play Dual Roles in the Regulation of Bidirectional Ribosomal Frameshifting.
Autorzy:
Huang WP; Institute of Biochemistry, National Chung-Hsing University, 145 Xingda Road, Taichung 402, Taiwan. .
Cho CP; Institute of Biochemistry, National Chung-Hsing University, 145 Xingda Road, Taichung 402, Taiwan. .
Chang KY; Institute of Biochemistry, National Chung-Hsing University, 145 Xingda Road, Taichung 402, Taiwan. .
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2018 Dec 04; Vol. 19 (12). Date of Electronic Publication: 2018 Dec 04.
Typ publikacji:
Journal Article
MeSH Terms:
Frameshifting, Ribosomal*
Nucleic Acid Heteroduplexes/*metabolism
RNA, Messenger/*metabolism
Base Sequence ; Codon/genetics ; Open Reading Frames/genetics ; Peptide Termination Factors/metabolism ; Protein Biosynthesis ; RNA, Messenger/chemistry ; Ribosomes/metabolism
Czasopismo naukowe
Tytuł:
Accounting for Programmed Ribosomal Frameshifting in the Computation of Codon Usage Bias Indices.
Autorzy:
Garcia V; Zurich University of Applied Sciences, Wädenswil, Switzerland victor.garcia_.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Zoller S; ETH Zurich, Zurich, Switzerland.
Anisimova M; Zurich University of Applied Sciences, Wädenswil, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2018 Oct 03; Vol. 8 (10), pp. 3173-3183. Date of Electronic Publication: 2018 Oct 03.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Codon*
Frameshifting, Ribosomal*
Models, Genetic*
Protein Biosynthesis/*genetics
RNA, Messenger/*genetics
Algorithms ; Saccharomyces cerevisiae/genetics ; Selection, Genetic
Czasopismo naukowe
Tytuł:
Role of Polyamine-Induced Dimerization of Antizyme in Its Cellular Functions.
Autorzy:
Hyvönen MT; School of Pharmacy, Biocenter Kuopio, University of Eastern Finland, Yliopistonranta 1B, 70210 Kuopio, Finland.
Smirnova OA; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilov Street 32, 119991 Moscow, Russia.
Mitkevich VA; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilov Street 32, 119991 Moscow, Russia.
Tunitskaya VL; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilov Street 32, 119991 Moscow, Russia.
Khomutov M; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilov Street 32, 119991 Moscow, Russia.
Karpov DS; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilov Street 32, 119991 Moscow, Russia.
Korolev SP; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
Häkkinen MR; School of Pharmacy, Biocenter Kuopio, University of Eastern Finland, Yliopistonranta 1B, 70210 Kuopio, Finland.
Pietilä M; School of Medicine, Biocenter Kuopio, University of Eastern Finland, Yliopistonranta 1E, 70210 Kuopio, Finland.
Gottikh MB; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia.
Vepsäläinen J; School of Pharmacy, Biocenter Kuopio, University of Eastern Finland, Yliopistonranta 1B, 70210 Kuopio, Finland.
Alhonen L; School of Pharmacy, Biocenter Kuopio, University of Eastern Finland, Yliopistonranta 1B, 70210 Kuopio, Finland.
Makarov AA; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilov Street 32, 119991 Moscow, Russia.
Kochetkov SN; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilov Street 32, 119991 Moscow, Russia.
Wallace HM; School of Medicine, Medical Sciences and Nutrition, Institute of Medical Sciences, University of Aberdeen, Foresterhill, Aberdeen AB25 2ZD, UK.
Keinänen TA; School of Pharmacy, Biocenter Kuopio, University of Eastern Finland, Yliopistonranta 1B, 70210 Kuopio, Finland.
Khomutov AR; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilov Street 32, 119991 Moscow, Russia.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Apr 21; Vol. 23 (9). Date of Electronic Publication: 2022 Apr 21.
Typ publikacji:
Journal Article
MeSH Terms:
Polyamines*/chemistry
Polyamines*/metabolism
Polyamines*/pharmacology
Spermidine*/chemistry
Spermidine*/metabolism
Spermidine*/pharmacology
Animals ; Dimerization ; Frameshifting, Ribosomal ; Mice ; Ornithine Decarboxylase/metabolism ; Proteins
Czasopismo naukowe
Tytuł:
Identifying Inhibitors of -1 Programmed Ribosomal Frameshifting in a Broad Spectrum of Coronaviruses.
Autorzy:
Munshi S; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.
Neupane K; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.
Ileperuma SM; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.
Halma MTJ; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.
Kelly JA; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
Halpern CF; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
Dinman JD; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
Loerch S; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
Woodside MT; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.; Li Ka Shing Institute of Virology, University of Alberta, Edmonton, AB T6G 2E1, Canada.
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Źródło:
Viruses [Viruses] 2022 Jan 18; Vol. 14 (2). Date of Electronic Publication: 2022 Jan 18.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Frameshift Mutation*
Antiviral Agents/*pharmacology
Coronavirus/*drug effects
Coronavirus/*genetics
Frameshifting, Ribosomal/*drug effects
Viral Proteins/*antagonists & inhibitors
Animals ; Antiviral Agents/therapeutic use ; Chiroptera/virology ; Coronavirus/classification ; Coronavirus Infections/drug therapy ; Nucleic Acid Conformation ; RNA, Messenger/genetics ; SARS-CoV-2/drug effects ; SARS-CoV-2/genetics ; Viral Proteins/genetics ; Virus Replication/drug effects
Czasopismo naukowe
Tytuł:
Translation of Plant RNA Viruses.
Autorzy:
Geng G; Shandong Province Key Laboratory of Agricultural Microbiology, Department of Plant Pathology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Wang D; Department of Biotechnology, College of Life Sciences, Zaozhuang University, Zaozhuang 277160, China.
Liu Z; Shandong Province Key Laboratory of Agricultural Microbiology, Department of Plant Pathology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Wang Y; Shandong Province Key Laboratory of Agricultural Microbiology, Department of Plant Pathology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Zhu M; Shandong Province Key Laboratory of Agricultural Microbiology, Department of Plant Pathology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Cao X; Department of Plant Pathology, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, China.
Yu C; Shandong Province Key Laboratory of Agricultural Microbiology, Department of Plant Pathology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Yuan X; Shandong Province Key Laboratory of Agricultural Microbiology, Department of Plant Pathology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
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Źródło:
Viruses [Viruses] 2021 Dec 13; Vol. 13 (12). Date of Electronic Publication: 2021 Dec 13.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Protein Biosynthesis*
Plant Viruses/*genetics
RNA Viruses/*genetics
Viral Proteins/*biosynthesis
Enhancer Elements, Genetic ; Frameshifting, Ribosomal ; Plant Viruses/metabolism ; RNA Caps/physiology ; RNA Viruses/metabolism
Czasopismo naukowe
Tytuł:
ASXL gain-of-function truncation mutants: defective and dysregulated forms of a natural ribosomal frameshifting product?
Autorzy:
Dinan AM; Department of Pathology, Division of Virology, University of Cambridge, Cambridge, CB2 1QP, UK.
Atkins JF; School of Biochemistry and Cell Biology, University College Cork, T12 YT57, Cork, Ireland.; Department of Human Genetics, University of Utah, Salt Lake City, UT, 84112, USA.
Firth AE; Department of Pathology, Division of Virology, University of Cambridge, Cambridge, CB2 1QP, UK. .
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Źródło:
Biology direct [Biol Direct] 2017 Oct 16; Vol. 12 (1), pp. 24. Date of Electronic Publication: 2017 Oct 16.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Conserved Sequence*
Frameshifting, Ribosomal*
Transcription Factors/*genetics
Vertebrates/*genetics
Amino Acid Sequence ; Animals ; Base Sequence ; Codon ; Open Reading Frames ; Sequence Alignment
Czasopismo naukowe
Tytuł:
From Recoding to Peptides for MHC Class I Immune Display: Enriching Viral Expression, Virus Vulnerability and Virus Evasion.
Autorzy:
Atkins JF; Schools of Biochemistry and Microbiology, University College Cork, T12 XF62 Cork, Ireland.
O'Connor KM; Schools of Biochemistry and Microbiology, University College Cork, T12 XF62 Cork, Ireland.
Bhatt PR; Schools of Biochemistry and Microbiology, University College Cork, T12 XF62 Cork, Ireland.; Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, 8093 Zurich, Switzerland.
Loughran G; Schools of Biochemistry and Microbiology, University College Cork, T12 XF62 Cork, Ireland.
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Źródło:
Viruses [Viruses] 2021 Jun 27; Vol. 13 (7). Date of Electronic Publication: 2021 Jun 27.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Immune Evasion*
DNA Viruses/*genetics
DNA Viruses/*immunology
Histocompatibility Antigens Class I/*immunology
RNA Viruses/*genetics
Antiviral Agents/pharmacology ; Codon, Terminator ; DNA Viruses/drug effects ; Frameshifting, Ribosomal ; Histocompatibility Antigens Class I/genetics ; Nucleic Acid Conformation ; Peptides/immunology ; Protein Biosynthesis ; RNA Viruses/drug effects ; RNA Viruses/immunology
Czasopismo naukowe

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