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Tytuł:
A draft genome of the neritid snail Theodoxus fluviatilis.
Autorzy:
Fuchs LIR; Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany.
Knobloch J; Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany.
Wiesenthal AA; Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany.; Marine Biology, University of Rostock, Albert-Einstein-Straße 3, D - 18059 Rostock, Germany.
Fuss J; Institute of Clinical Molecular Biology, Kiel University (CAU), University Hospital Schleswig Holstein, Rosalind-Franklin-Strasse 12, D - 24105 Kiel, Germany.
Franzenburg S; Institute of Clinical Molecular Biology, Kiel University (CAU), University Hospital Schleswig Holstein, Rosalind-Franklin-Strasse 12, D - 24105 Kiel, Germany.
Torres Oliva M; Institute of Clinical Molecular Biology, Kiel University (CAU), University Hospital Schleswig Holstein, Rosalind-Franklin-Strasse 12, D - 24105 Kiel, Germany.
Müller C; Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany.
Wheat CW; Department of Zoology, Stockholm University, Svante Arrheniusväg 18 B, S-10691 Stockholm, Sweden.
Hildebrandt JP; Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Mar 06; Vol. 14 (3).
Typ publikacji:
Journal Article
MeSH Terms:
Snails*/genetics
Genome*
Animals ; Europe ; Molecular Sequence Annotation ; Gene Expression Profiling
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Prediction of transcript structure and concentration using RNA-Seq data.
Autorzy:
Sharma H; Amity Institute of Integrative Sciences and Health, Amity University Haryana, Gurugram 122413, India.
Pani T; Amity Institute of Integrative Sciences and Health, Amity University Haryana, Gurugram 122413, India.
Dasgupta U; Amity Institute of Integrative Sciences and Health, Amity University Haryana, Gurugram 122413, India.
Batra J; School of Biomedical Sciences, Institute of Health and Biomedical Innovation (IHBI), Translational Research Institute, Queensland University of Technology (QUT), Brisbane, QLD, Australia.
Sharma RD; Amity Institute of Integrative Sciences and Health, Amity University Haryana, Gurugram 122413, India.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Mar 19; Vol. 24 (2).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Alternative Splicing*
Gene Expression Profiling*/methods
Humans ; RNA-Seq ; Genome ; Exons ; Sequence Analysis, RNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Denoising adaptive deep clustering with self-attention mechanism on single-cell sequencing data.
Autorzy:
Su Y; Key Lab of Intelligent Computing and Signal Processing of Ministry of Education, School of Artificial Intelligence, Anhui University, Hefei, 230601, China.
Lin R; School of Computer Science and Technology, Anhui University, Hefei, 230601, China.
Wang J; School of Computer Science and Technology, Anhui University, Hefei, 230601, China.
Tan D; Institutes of Physical Science and Information Technology, Anhui University, Hefei, 230601, China.
Zheng C; Key Lab of Intelligent Computing and Signal Processing of Ministry of Education, School of Artificial Intelligence, Anhui University, Hefei, 230601, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Mar 19; Vol. 24 (2).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*/methods
Single-Cell Analysis*/methods
Sequence Analysis, RNA/methods ; Cluster Analysis ; Algorithms
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A cofunctional grouping-based approach for non-redundant feature gene selection in unannotated single-cell RNA-seq analysis.
Autorzy:
Deng T; School of Data Science, The Chinese University of Hong Kong-Shenzhen, Guangdong, China.
Chen S; School of Statistics and Mathematics, Zhongnan University of Economics and Law, Hubei, China.
Zhang Y; School of Statistics and Mathematics, Zhongnan University of Economics and Law, Hubei, China.
Xu Y; School of Statistics and Mathematics, Zhongnan University of Economics and Law, Hubei, China.
Feng D; School of Pharmacy, Tongji Medical College, Huazhong University of Sciences and Technology, Hubei, China.
Wu H; Department of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, GA, USA.; Faculty of Computer Science and Control Engineering, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China.
Sun X; School of Statistics and Mathematics, Zhongnan University of Economics and Law, Hubei, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Mar 19; Vol. 24 (2).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Gene Expression Profiling*/methods
Algorithms*
Sequence Analysis, RNA/methods ; Single-Cell Gene Expression Analysis ; Single-Cell Analysis/methods ; Cluster Analysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
scGAD: a new task and end-to-end framework for generalized cell type annotation and discovery.
Autorzy:
Zhai Y; School of Mathematical Sciences, Peking University, Beijing, China.
Chen L; Huawei Technologies Co., Ltd., Beijing, China.
Deng M; School of Mathematical Sciences, Peking University, Beijing, China.; Center for Statistical Science, Peking University, Beijing, China.; Center for Quantitative Biology, Peking University, Beijing, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Mar 19; Vol. 24 (2).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*/methods
Algorithms*
Single-Cell Analysis/methods ; Computer Simulation ; Cluster Analysis ; Sequence Analysis, RNA/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-sequencing.
Autorzy:
Lee J; Dept. of Computer Science, College of SW Convergence, Dankook University, Yongin-si, Korea, 16890.
Kim M; Dept. of Computer Science, College of SW Convergence, Dankook University, Yongin-si, Korea, 16890.
Kang K; Dept. of Microbiology, College of Natural Sciences, Dankook University, Cheonan-si, Korea, 31116.
Yang CS; Dept. of Molecular and Life Science, Center for Bionano Intelligence Education and Research, Hanyang University, Ansan, Korea, 15588.
Yoon S; Dept. of Electronics & Electrical Eng., College of Engineering, Dankook University, Yongin-si Korea, 16890.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Mar 19; Vol. 24 (2).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*
Macrophages*
RNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
scSTAR reveals hidden heterogeneity with a real-virtual cell pair structure across conditions in single-cell RNA sequencing data.
Autorzy:
Hao J; Institute of Clinical Science, Zhongshan Hospital, Fudan University, Shanghai, China.
Zou J; Institute of Clinical Science, Zhongshan Hospital, Fudan University, Shanghai, China.
Zhang J; Department of Anesthesiology and Perioperative Medicine, Henan Provincial People's Hospital, People's Hospital of Zhengzhou University, Zhengzhou, Henan, 450003, China.
Chen K; Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai, 201602, China.
Wu D; Institute of Clinical Science, Zhongshan Hospital, Fudan University, Shanghai, China.
Cao W; Department of Oral Maxillofacial-Head and Neck Oncology, Ninth People's Hospital, Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, National Clinical Research Center of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, 200011, China.
Shang G; Department of Pathology of Zhongshan Hospital, Fudan University, Shanghai, China.
Yang JYH; School of Mathematics and Statistics and Charles Perkins Center, The University of Sydney, Australia.
Wong-Lin K; Intelligent Systems Research Centre, Ulster University, Magee Campus, Derry~Londonderry, Northern Ireland, UK.
Sun H; Department of Cardiac Surgery, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan City, Shandong, 250012, China.
Zhang Z; Ninth People's Hospital, Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, National Clinical Research Center of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, 200011, China.
Wang X; Institute of Clinical Science, Zhongshan Hospital, Fudan University, Shanghai, China.
Chen W; Ninth People's Hospital, Shanghai Key Laboratory of Stomatology & Shanghai Research Institute of Stomatology, National Clinical Research Center of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, 200011, China.
Zou X; Jinshan Hospital Center for Tumor Diagnosis & Therapy, Jinshan Hospital, Fudan University, Shanghai, 201508, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Mar 19; Vol. 24 (2).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
RNA*/genetics
Gene Expression Profiling*/methods
Animals ; Mice ; Sequence Analysis, RNA/methods ; Genome
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A comprehensive assessment of cell type-specific differential expression methods in bulk data.
Autorzy:
Meng G; Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, 44106, Ohio, USA.
Tang W; Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, 44106, Ohio, USA.
Huang E; Department of Surgery, The University of Texas Southwestern Medical Center, Dallas, 75390, Texas, USA.
Li Z; Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, 77030, Texas, USA.
Feng H; Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, 44106, Ohio, USA.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Software*
Gene Expression Profiling*/methods
RNA-Seq ; Computer Simulation ; Signal-To-Noise Ratio ; Sequence Analysis, RNA/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Improving the performance of single-cell RNA-seq data mining based on relative expression orderings.
Autorzy:
Chen Y; State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.; College of Science, Nanjing Agricultural University, Nanjing 210095, China.
Zhang H; College of Science, Nanjing Agricultural University, Nanjing 210095, China.
Sun X; State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*/methods
Single-Cell Gene Expression Analysis*
Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods ; Transcriptome ; Cluster Analysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
scDCCA: deep contrastive clustering for single-cell RNA-seq data based on auto-encoder network.
Autorzy:
Wang J; Anhui Provincial Key Laboratory of Multimodal Cognitive Computation, School of Computer Science and Technology, Anhui University, Hefei, China.
Xia J; Institutes of Physical Science and Information Technology, Anhui University, Hefei, China.
Wang H; School of Mathematics and Systems Science, Xinjiang University, Urumqi, China.
Su Y; School of Artificial Intelligence, Anhui University, Hefei, China.
Zheng CH; School of Artificial Intelligence, Anhui University, Hefei, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*/methods
Single-Cell Gene Expression Analysis*
Humans ; Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods ; Algorithms ; Cluster Analysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The hitchhikers' guide to RNA sequencing and functional analysis.
Autorzy:
Chen JW; Department of Biology, University of Alabama at Birmingham, Birmingham, AL, USA.
Shrestha L; Department of Genetics, University of Alabama at Birmingham, School of Medicine, Birmingham, AL, USA.
Green G; Department of Biology, University of Alabama at Birmingham, Birmingham, AL, USA.
Leier A; Department of Genetics, University of Alabama at Birmingham, School of Medicine, Birmingham, AL, USA.; Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, School of Medicine, Birmingham, AL, USA.
Marquez-Lago TT; Department of Genetics, University of Alabama at Birmingham, School of Medicine, Birmingham, AL, USA.; Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, School of Medicine, Birmingham, AL, USA.; Department of Microbiology, University of Alabama at Birmingham, School of Medicine, Birmingham, AL, USA.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Artificial Intelligence*
Gene Expression Profiling*/methods
Transcriptome ; Sequence Analysis, RNA/methods ; Genome ; High-Throughput Nucleotide Sequencing/methods ; RNA/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
scGMAAE: Gaussian mixture adversarial autoencoders for diversification analysis of scRNA-seq data.
Autorzy:
Wang HY; College of Mathematics and System Sciences, Xinjiang University, Urumqi, China.
Zhao JP; College of Mathematics and System Sciences, Xinjiang University, Urumqi, China.; Institute of Mathematics and Physics, Xinjiang University, Urumqi, China.
Zheng CH; College of Mathematics and System Sciences, Xinjiang University, Urumqi, China.; School of Artificial Intelligence, Anhui University, Hefei, China.
Su YS; School of Artificial Intelligence, Anhui University, Hefei, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*/methods
Single-Cell Gene Expression Analysis*
Sequence Analysis, RNA/methods ; Normal Distribution ; Bayes Theorem ; Single-Cell Analysis/methods ; Cluster Analysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy.
Autorzy:
Deng W; Department of Biostatistics, Yale School of Public Health, 60 College Street, New Haven, CT, USA.
Li B; Department of Biostatistics, Yale School of Public Health, 60 College Street, New Haven, CT, USA.; State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, Department of Pathophysiology, Peking Union Medical College, Beijing, China.
Wang J; Department of Biostatistics, Yale School of Public Health, 60 College Street, New Haven, CT, USA.
Jiang W; Department of Biostatistics, Yale School of Public Health, 60 College Street, New Haven, CT, USA.
Yan X; Section of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.
Li N; Section of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.
Vukmirovic M; Section of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.; Leslie Dan Faculty of Pharmacy, University of Toronto, 144 College St., ON, Canada.
Kaminski N; Section of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.
Wang J; State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, Department of Pathophysiology, Peking Union Medical College, Beijing, China.
Zhao H; Department of Biostatistics, Yale School of Public Health, 60 College Street, New Haven, CT, USA.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Single-Cell Analysis*
Gene Expression Profiling*
Bayes Theorem ; Transcriptome ; Sequence Analysis, RNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data.
Autorzy:
Chen S; School of Computer Science and Engineering, Central South University, Changsha 410083, China.
Yan X; School of Computer Science and Engineering, Central South University, Changsha 410083, China.
Zheng R; School of Computer Science and Engineering, Central South University, Changsha 410083, China.
Li M; School of Computer Science and Engineering, Central South University, Changsha 410083, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2023 Jan 19; Vol. 24 (1).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*/methods
Single-Cell Gene Expression Analysis*
RNA-Seq ; Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods ; Software
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Reference long-read isoform-aware transcriptomes of 4 human peripheral blood lymphocyte subsets.
Autorzy:
Woolley CR; Department of Microbiology and Immunology, University of Louisville School of Medicine, Louisville, KY 40202, USA.
Chariker JH; KY INBRE Bioinformatics Core, University of Louisville, Louisville, KY 40202, USA.; Department of Neuroscience Training, University of Louisville, Louisville, KY 40202, USA.
Rouchka EC; KY INBRE Bioinformatics Core, University of Louisville, Louisville, KY 40202, USA.; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY 40202, USA.
Ford EE; Department of Microbiology and Immunology, University of Louisville School of Medicine, Louisville, KY 40202, USA.
Hudson EA; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY 40202, USA.
Waigel SJ; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY 40202, USA.
Smith ML; Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY 40202, USA.
Mitchell TC; Department of Microbiology and Immunology, University of Louisville School of Medicine, Louisville, KY 40202, USA.; Brown Cancer Center, University of Louisville Health, Louisville, KY 40202, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2022 Nov 04; Vol. 12 (11).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Transcriptome*
Gene Expression Profiling*
Humans ; Male ; High-Throughput Nucleotide Sequencing ; Protein Isoforms/genetics ; Protein Isoforms/metabolism ; Sequence Analysis, RNA ; Lymphocyte Subsets/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Transcriptome analysis of Lantana camara flower petals reveals candidate anthocyanin biosynthesis genes mediating red flower color development.
Autorzy:
Parrish SB; Department of Environmental Horticulture, Gulf Coast Research and Education Center, University of Florida, IFAS, 14625 County Road 672, Wimauma, FL 33598, USA.
Paudel D; Department of Environmental Horticulture, Gulf Coast Research and Education Center, University of Florida, IFAS, 14625 County Road 672, Wimauma, FL 33598, USA.
Deng Z; Department of Environmental Horticulture, Gulf Coast Research and Education Center, University of Florida, IFAS, 14625 County Road 672, Wimauma, FL 33598, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Dec 29; Vol. 14 (1).
Typ publikacji:
Journal Article
MeSH Terms:
Anthocyanins*
Lantana*/genetics
Lantana*/metabolism
Gene Expression Regulation, Plant ; Pigmentation/genetics ; Plant Breeding ; Gene Expression Profiling ; Transcriptome ; Flowers/genetics ; Flowers/metabolism ; Color
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transcriptome analysis reveals molecular signature and cell-type difference of Homo sapiens endothelial-to-mesenchymal transition.
Autorzy:
Bronson R; Department of Medicine, Division of Endocrinology, Diabetes and Metabolism, Johns Hopkins University School of Medicine, St.Petersburg, FL 33701, USA.; Institute for Fundamental Biomedical Research, Johns Hopkins All Children's Hospital, St.Petersburg, FL 33701, USA.
Lyu J; Department of Medicine, Division of Endocrinology, Diabetes and Metabolism, Johns Hopkins University School of Medicine, St.Petersburg, FL 33701, USA.; Institute for Fundamental Biomedical Research, Johns Hopkins All Children's Hospital, St.Petersburg, FL 33701, USA.
Xiong J; Department of Medicine, Division of Endocrinology, Diabetes and Metabolism, Johns Hopkins University School of Medicine, St.Petersburg, FL 33701, USA.; Institute for Fundamental Biomedical Research, Johns Hopkins All Children's Hospital, St.Petersburg, FL 33701, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Dec 06; Vol. 13 (12).
Typ publikacji:
Journal Article
MeSH Terms:
Endothelial Cells*/metabolism
Epithelial-Mesenchymal Transition*/genetics
Humans ; Cells, Cultured ; Gene Expression Profiling
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Comparative transcriptomics reveals divergence in pathogen response gene families amongst 20 forest tree species.
Autorzy:
Lu M; Department of Biological Sciences, University of Notre Dame, 100 Galvin Life Sciences, Notre Dame, IN 46556, USA.
Cao M; CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303, China.
Yang J; CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303, China.
Swenson NG; Department of Biological Sciences, University of Notre Dame, 100 Galvin Life Sciences, Notre Dame, IN 46556, USA.; University of Notre Dame Environmental Research Center (UNDERC), 736 Flanner Hall, Notre Dame, IN 46556, USA.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Dec 06; Vol. 13 (12).
Typ publikacji:
Journal Article
MeSH Terms:
Trees*/genetics
Ecosystem*
Forests ; Gene Expression Profiling
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Transcriptomic landscape of Atlantic salmon (Salmo salar L.) skin.
Autorzy:
Sveen LR; Nofima, Fish Health, Tromsø NO-9291, Norway.
Robinson N; Nofima, Fish Health, Tromsø NO-9291, Norway.; School of BioSciences, The University of Melbourne, Melbourne 3010, Australia.
Krasnov A; Nofima, Fish Health, Tromsø NO-9291, Norway.
Daniels RR; The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Edinburgh EH25 9RG, UK.
Vaadal M; Nofima, Fish Health, Tromsø NO-9291, Norway.
Karlsen C; Nofima, Fish Health, Tromsø NO-9291, Norway.
Ytteborg E; Nofima, Fish Health, Tromsø NO-9291, Norway.
Robledo D; The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Edinburgh EH25 9RG, UK.
Salisbury S; The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Edinburgh EH25 9RG, UK.
Dagnachew B; Nofima, Fish Health, Tromsø NO-9291, Norway.
Lazado CC; Nofima, Fish Health, Tromsø NO-9291, Norway.
Tengs T; Nofima, Fish Health, Tromsø NO-9291, Norway.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Nov 01; Vol. 13 (11).
Typ publikacji:
Meta-Analysis; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Salmo salar*/genetics
Fish Diseases*/genetics
Animals ; Transcriptome ; Gene Expression Profiling ; Skin/metabolism ; Epithelium
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight.
Autorzy:
Zhang F; Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
Yang C; Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
Wang Y; Department of Ophthalmology, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.; Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology, Shanghai 200025, China.; Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai Jiao Tong University, Shanghai 201109, China.
Jiao H; Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
Wang Z; Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
Shen J; Department of Ophthalmology, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.; Shanghai Key Laboratory of Orbital Diseases and Ocular Oncology, Shanghai 200025, China.; Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai Jiao Tong University, Shanghai 201109, China.
Li L; Department of Histoembryology, Genetics and Developmental Biology, Shanghai Key Laboratory of Reproductive Medicine, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2022 Sep 20; Vol. 23 (5).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*/methods
Single-Cell Analysis*/methods
Sequence Analysis, RNA/methods ; Software ; Transcriptome
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Wyświetlanie 1-20 z 1222

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