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Wyszukujesz frazę ""Gene Expression Profiling methods"" wg kryterium: Temat


Tytuł :
Machine Learning Model for Lymph Node Metastasis Prediction in Breast Cancer Using Random Forest Algorithm and Mitochondrial Metabolism Hub Genes
Autorzy :
Byung-Chul Kim
Jingyu Kim
Ilhan Lim
Dong Ho Kim
Sang Moo Lim
Sang-Keun Woo
Pokaż więcej
Temat :
sequence analysis
RNA/history
gene expression profiling/methods
models
statistical
algorithms
Technology
Engineering (General). Civil engineering (General)
TA1-2040
Biology (General)
QH301-705.5
Physics
QC1-999
Chemistry
QD1-999
Źródło :
Applied Sciences, Vol 11, Iss 2897, p 2897 (2021)
Opis pliku :
electronic resource
Relacje :
https://www.mdpi.com/2076-3417/11/7/2897; https://doaj.org/toc/2076-3417
Dostęp URL :
https://doaj.org/article/83346374a16b4d34a247103401bcdb91
Czasopismo naukowe
Tytuł :
Evaluation of commonly used analysis strategies for epigenome- and transcriptome-wide association studies through replication of large-scale population studies
Autorzy :
van Rooij, Jeroen
Mandaviya, Pooja R
Claringbould, Annique
Felix, Janine F
van Dongen, Jenny
Jansen, Rick
Franke, Lude
't Hoen, Peter A C
Heijmans, Bas
van Meurs, Joyce B J
Pokaż więcej
Temat :
Adult
Aged
Cohort Studies
DNA Methylation
Epigenomics/methods
Female
Gene Expression Profiling/methods
Humans
Male
Middle Aged
Sequence Analysis, RNA
Young Adult
Źródło :
Genome Biology, 20(1). BMC
Opis pliku :
application/pdf
Tytuł :
s·nr: a visual analytics framework for contextual analyses of private and public RNA-seq data
Autorzy :
Klemm, Paul
Frommolt, Peter
Kornfeld, Jan-Wilhelm
Pokaż więcej
Temat :
Visualization
Biotechnology
User-Computer Interface
High-Throughput Nucleotide Sequencing/methods
Software
Next-generation sequencing
Visual analytics
Differentially expressed genes
Gene Expression Profiling/methods
Analysis workflow
Mice
GO analysis
QH426-470
Computer Graphics
Genetics
Sequence Analysis, RNA/methods
GUI
Animals
Gene filtering
RNA-seq
TP248.13-248.65
Źródło :
BMC Genomics, Vol 20, Iss 1, Pp 1-12 (2019)
Klemm, P, Frommolt, P & Kornfeld, J W 2019, ' s ·nr : a visual analytics framework for contextual analyses of private and public RNA-seq data ', BMC Genomics, vol. 20, 85 . https://doi.org/10.1186/s12864-018-5396-0
Opis pliku :
application/pdf
Tytuł :
Non-linear transformations of age at diagnosis, tumor size, and number of positive lymph nodes in prediction of clinical outcome in breast cancer
Autorzy :
Forsare, Carina
Bak, Martin
Falck, Anna-Karin
Grabau, Dorthe
Killander, Fredrika
Malmström, Per
Rydén, Lisa
Stål, Olle
Sundqvist, Marie
Bendahl, Pär-Ola
Fernö, Mårten
Pokaż więcej
Temat :
Categorical
Risk Factors
Research Article
Cancer och onkologi
Lymphatic Metastasis/pathology
Fractional polynomials
Breast cancer
Breast Neoplasms/pathology
Prognostic
Continuous
Splines
Middle Aged
Gene Expression Profiling/methods
Prognosis
Cancer and Oncology
Neoplasms. Tumors. Oncology. Including cancer and carcinogens
Lymph Nodes/pathology
RC254-282
Neoplasm Recurrence, Local/pathology
Adult
Female
Humans
Proportional Hazards Models
Źródło :
BMC Cancer, Vol 18, Iss 1, Pp 1-12 (2018)
Forsare, C, Bak, M, Falck, A K, Grabau, D, Killander, F, Malmström, P, Rydén, L, Stål, O, Sundqvist, M, Bendahl, P O & Fernö, M 2018, ' Non-linear transformations of age at diagnosis, tumor size, and number of positive lymph nodes in prediction of clinical outcome in breast cancer ', BMC Cancer, vol. 18, 1226 . https://doi.org/10.1186/s12885-018-5123-x
Opis pliku :
application/pdf
Tytuł :
The Prosigna gene expression assay and responsiveness to adjuvant cyclophosphamide-based chemotherapy in premenopausal high-risk patients with breast cancer
Autorzy :
Jensen, Maj-Britt
Lænkholm, Anne-Vibeke
Nielsen, Torsten O.
Eriksen, Jens Ole
Wehn, Pernille
Hood, Tressa
Ram, Namratha
Buckingham, Wesley
Ferree, Sean
Ejlertsen, Bent
Pokaż więcej
Temat :
Retrospective Studies
Adjuvant chemotherapy
Evaluation Study
Research Article
Breast neoplasms
Premenopause
Mastectomy
Research Support, Non-U.S. Gov't
Neoplasms. Tumors. Oncology. Including cancer and carcinogens
Fluorouracil/therapeutic use
Receptor, ErbB-2/metabolism
Methotrexate/therapeutic use
Cyclophosphamide
Chemotherapy, Adjuvant/methods
Female
Antineoplastic Combined Chemotherapy Protocols/therapeutic use
Breast Neoplasms/genetics
Breast/pathology
Predictive Value of Tests
Cyclophosphamide/therapeutic use
Middle Aged
Gene Expression Profiling/methods
Prognosis
Risk Assessment/methods
PAM50
Follow-Up Studies
Neoplasm Recurrence, Local/diagnosis
Disease-Free Survival
RC254-282
Journal Article
Adult
Humans
CMF
Clinical Trials, Phase III as Topic
Źródło :
Breast Cancer Research, Vol 20, Iss 1, Pp 1-10 (2018)
Breast Cancer Research : BCR
Jensen, M B, Lænkholm, A V, Nielsen, T O, Eriksen, J O, Wehn, P, Hood, T, Ram, N, Buckingham, W, Ferree, S & Ejlertsen, B 2018, ' The Prosigna gene expression assay and responsiveness to adjuvant cyclophosphamide-based chemotherapy in premenopausal high-risk patients with breast cancer ', Breast Cancer Research, vol. 20, no. 1, 79 . https://doi.org/10.1186/s13058-018-1012-0
Jensen, M-B, Lænkholm, A-V, Nielsen, T O, Eriksen, J O, Wehn, P, Hood, T, Ram, N, Buckingham, W, Ferree, S & Ejlertsen, B 2018, ' The Prosigna gene expression assay and responsiveness to adjuvant cyclophosphamide-based chemotherapy in premenopausal high-risk patients with breast cancer ', Breast cancer research : BCR, vol. 20, 79 . https://doi.org/10.1186/s13058-018-1012-0
Opis pliku :
application/pdf
Tytuł :
Positioning Europe for the EPITRANSCRIPTOMICS challenge
Autorzy :
Jantsch, Michael F.
Quattrone, Alessandro
O'Connell, Mary
Helm, Mark
Frye, Michaela
Macias-Gonzales, Manuel
Ohman, Marie
Ameres, Stefan
Willems, Luc
Fuks, Francois
Oulas, Anastasis
Vanacova, Stepanka
Nielsen, Henrik
Bousquet-Antonelli, Cecile
Motorin, Yuri
Roignant, Jean-Yves
Balatsos, Nikolaos
Dinnyes, Andras
Baranov, Pavel
Kelly, Vincent
Lamm, Ayelet
Rechavi, Gideon
Pelizzola, Mattia
Liepins, Janis
Holodnuka Kholodnyuk, Irina
Zammit, Vanessa
Ayers, Duncan
Drablos, Finn
Dahl, John Arne
Bujnicki, Janusz
Jeronimo, Carmen
Almeida, Raquel
Neagu, Monica
Costache, Marieta
Banković, Jasna
Banović, Bojana
Kyselovic, Jan
Valor, Luis Miguel
Selbert, Stefan
Pir, Pinar
Demircan, Turan
Cowling, Victoria
Schäfer, Matthias
Rossmanith, Walter
Lafontaine, Denis
David, Alexandre
Carre, Clement
Lyko, Frank
Schaffrath, Raffael
Schwartz, Schraga
Verdel, Andre
Klungland, Arne
Purta, Elzbieta
Timotijevic, Gordana
Cardona, Fernando
Davalos, Alberto
Ballana, Ester
O Carroll, Donal
Ule, Jernej
Fray, Rupert
Pokaż więcej
Temat :
Detection of RNA modification
DNA, Neoplasm/genetics
Transcriptome
Epigenesis, Genetic
Gene Expression Profiling/methods
RNA, Neoplasm/genetics
Research Support, Non-U.S. Gov't
Neoplasms/genetics
Database of Modification
Epitranscriptomics
European funding
Gene Expression Regulation, Neoplastic
[SDV]Life Sciences [q-bio]
Journal Article
Model systems
Epigenomics/standards
Europe
Humans
Źródło :
RNA Biology, Taylor & Francis, 2018, 15 (6), pp.829-831. ⟨10.1080/15476286.2018.1460996⟩
Jantsch, M F, Quattrone, A, O'Connell, M, Helm, M, Frye, M, Macias-Gonzales, M, Ohman, M, Ameres, S, Willems, L, Fuks, F, Oulas, A, Vanacova, S, Nielsen, H, Bousquet-Antonelli, C, Motorin, Y, Roignant, J-Y, Balatsos, N, Dinnyes, A, Baranov, P, Kelly, V, Lamm, A, Rechavi, G, Pelizzola, M, Liepins, J, Holodnuka Kholodnyuk, I, Zammit, V, Ayers, D, Drablos, F, Dahl, J A, Bujnicki, J, Jeronimo, C, Almeida, R, Neagu, M, Costache, M, Bankovic, J, Banovic, B, Kyselovic, J, Valor, L M, Selbert, S, Pir, P, Demircan, T, Cowling, V, Schäfer, M, Rossmanith, W, Lafontaine, D, David, A, Carre, C, Lyko, F, Schaffrath, R, Schwartz, S, Verdel, A, Klungland, A, Purta, E, Timotijevic, G, Cardona, F, Davalos, A, Ballana, E, O Carroll, D, Ule, J & Fray, R 2018, ' Positioning Europe for the EPITRANSCRIPTOMICS challenge ', RNA biology, vol. 15, no. 6, pp. 829-831 . https://doi.org/10.1080/15476286.2018.1460996
Opis pliku :
application/pdf
Tytuł :
No detectable differential microRNA expression between non-atherosclerotic arteries of type 2 diabetic patients (treated or untreated with metformin) and non-diabetic patients
Autorzy :
Steffensen, Lasse Bach
Feddersen, Søren
Preil, Simone Rørdam
Rasmussen, Lars Melholt
Pokaż więcej
Temat :
RC666-701
Mammary Arteries/drug effects
Diseases of the circulatory (Cardiovascular) system
Metformin/therapeutic use
Aged
MicroRNAs/genetics
Hypoglycemic Agents/therapeutic use
Diabetes Mellitus, Type 2/diagnosis
Artery
Middle Aged
Gene Expression Profiling/methods
endocrine system diseases
nutritional and metabolic diseases
Gene Expression Regulation
Microarray
Original Investigation
Oligonucleotide Array Sequence Analysis
MicroRNA
Female
Diabetes
Humans
Male
Case-Control Studies
Źródło :
Cardiovascular Diabetology, Vol 17, Iss 1, Pp 1-10 (2018)
Steffensen, L B, Feddersen, S, Preil, S R & Rasmussen, L M 2018, ' No detectable differential microRNA expression between non-atherosclerotic arteries of type 2 diabetic patients (treated or untreated with metformin) and non-diabetic patients ', Cardiovascular Diabetology, vol. 17, 72 . https://doi.org/10.1186/s12933-018-0715-y
Cardiovascular Diabetology
Opis pliku :
application/pdf
Tytuł :
The RNA processing factors THRAP3 and BCLAF1 promote the DNA damage response through selective mRNA splicing and nuclear export
Autorzy :
Vohhodina, Jekaterina
Barros, Eliana M.
Savage, Abigail L.
Liberante, Fabio G.
Manti, Lorenzo
Bankhead, Peter
Cosgrove, Nicola
Madden, Angelina F.
Harkin, D. Paul
Savage, Kienan I.
Pokaż więcej
Temat :
DNA Damage
Genome Integrity, Repair and Replication
DNA-Binding Proteins/genetics
Tumor Suppressor Proteins/genetics
Gene Expression Profiling/methods
Cell Line, Tumor
In Situ Hybridization, Fluorescence
RNA Splicing
Mutation
Active Transport, Cell Nucleus/genetics
Repressor Proteins/genetics
Microscopy, Fluorescence
Transcription Factors/genetics
Ataxia Telangiectasia Mutated Proteins/genetics
HEK293 Cells
Humans
RNA Interference
Źródło :
Vohhodina, J, Barros, E M, Savage, A L, Liberante, F G, Manti, L, Bankhead, P, Cosgrove, N, Madden, A F, Harkin, D P & Savage, K I 2017, ' The RNA processing factors THRAP3 and BCLAF1 promote the DNA damage response through selective mRNA splicing and nuclear export ', Nucleic Acids Research, pp. 1-18 . https://doi.org/10.1093/nar/gkx1046
Vohhodina, J, Barros, E M, Savage, A L, Liberante, F G, Manti, L, Bankhead, P, Cosgrove, N, Madden, A F, Harkin, D P & Savage, K I 2017, ' The RNA processing factors THRAP3 and BCLAF1 promote the DNA damage response through selective mRNA splicing and nuclear export ', Nucleic Acids Research, vol. 45, no. 22, pp. 12816-12833 . https://doi.org/10.1093/nar/gkx1046
Opis pliku :
application/pdf
Tytuł :
Clinical performance evaluation of the Idylla NRAS-BRAF mutation test on retrospectively collected formalin-fixed paraffin-embedded colorectal cancer tissue
Autorzy :
Johnston, Louise
Power, Michael
Sloan, Philip
Long, Anna
Silmon, Angela
Chaffey, Ben
Lisgo, Andrea Jane
Little, Liam
Vercauteren, Ellen
Steiniche, Torben
Meyer, Tine
Simpson, John
Pokaż więcej
Temat :
Retrospective Studies
molecular oncology
Formaldehyde
colorectal cancer
GTP Phosphohydrolases/analysis
Aged
Tissue Fixation
Young Adult
Middle Aged
Paraffin Embedding
Gene Expression Profiling/methods
Colorectal Neoplasms/genetics
Proto-Oncogene Proteins B-raf/analysis
Original Article
DNA Mutational Analysis/methods
Real-Time Polymerase Chain Reaction/methods
Membrane Proteins/analysis
Adult
Aged, 80 and over
Female
Humans
molecular pathology
Male
Źródło :
Journal of Clinical Pathology
Johnston, L, Power, M, Sloan, P, Long, A, Silmon, A, Chaffey, B, Lisgo, A J, Little, L, Vercauteren, E, Steiniche, T, Meyer, T & Simpson, J 2018, ' Clinical performance evaluation of the Idylla NRAS-BRAF mutation test on retrospectively collected formalin-fixed paraffin-embedded colorectal cancer tissue ', Journal of Clinical Pathology, vol. 71, no. 4, pp. 336-343 . https://doi.org/10.1136/jclinpath-2017-204629
Opis pliku :
application/pdf
Tytuł :
Modeling stochasticity and robustness in gene regulatory networks
Autorzy :
Garg, A.
Mohanram, K.
Di Cara, A.
De Micheli, G.
Xenarios, I.
Pokaż więcej
Temat :
Algorithms
Computational Biology/methods
Gene Expression Profiling/methods
Gene Regulatory Networks
Ismb/Eccb 2009 Conference Proceedings June 27 to July 2, 2009, Stockholm, Sweden
Original Papers
Gene Regulation and Transcriptomics
Źródło :
Bioinformatics, vol. 25, no. 12, pp. i101-i109
Opis pliku :
application/pdf
Tytuł :
switchde: inference of switch-like differential expression along single-cell trajectories
Autorzy :
Campbell, Kieran R
Yau, Christopher
Pokaż więcej
Temat :
Applications Notes
Models, Statistical
Software
Sequence Analysis, RNA/methods
Gene Expression Profiling/methods
Models, Genetic
Gene Expression
Single-Cell Analysis
Źródło :
Campbell, K R & Yau, C 2017, ' switchde : inference of switch-like differential expression along single-cell trajectories ', Bioinformatics (Oxford, England), vol. 33, no. 8, pp. 1241-1242 . https://doi.org/10.1093/bioinformatics/btw798

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