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Tytuł :
Immune cell infiltration landscape and immune marker molecular typing in preeclampsia.
Autorzy :
Meng Y; Department of Gynecology and Obstetrics, Shengjing Hospital of China Medical University, Shenyang , Liaoning Province, China.; Key Laboratory of Maternal-Fetal Medicine of Liaoning Province, Shenyang , Liaoning Province, China.
Li C; Department of Gynecology and Obstetrics, Shengjing Hospital of China Medical University, Shenyang , Liaoning Province, China.; Key Laboratory of Maternal-Fetal Medicine of Liaoning Province, Shenyang , Liaoning Province, China.
Liu CX; Department of Gynecology and Obstetrics, Shengjing Hospital of China Medical University, Shenyang , Liaoning Province, China.; Key Laboratory of Maternal-Fetal Medicine of Liaoning Province, Shenyang , Liaoning Province, China.
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Źródło :
Bioengineered [Bioengineered] 2021 Dec; Vol. 12 (1), pp. 540-554.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Regulatory Networks*/genetics
Gene Regulatory Networks*/immunology
Pre-Eclampsia*/genetics
Pre-Eclampsia*/immunology
Transcriptome*/genetics
Transcriptome*/immunology
Computational Biology ; Female ; Gene Expression Profiling ; Genetic Markers/genetics ; Genetic Markers/immunology ; Humans ; Immune System Phenomena/genetics ; Leukocytes/immunology ; Macrophages/immunology ; Molecular Typing ; Pregnancy
Czasopismo naukowe
Tytuł :
On convergence for hybrid models of gene regulatory networks under polytopic uncertainties: a Lyapunov approach.
Autorzy :
Pasquini M; Department of Electrical and Electronic Engineering, Imperial College of London, London, UK. .; Division of Decision and Control, KTH Royal Institute of Technology, Stockholm, Sweden. .; Competence Centre for Advanced Bioproduction by Continuous Processing, AdBIOPRO, Stockholm, Sweden. .
Angeli D; Department of Electrical and Electronic Engineering, Imperial College of London, London, UK.; Department of Information Engineering, University of Florence, Florence, Italy.
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Źródło :
Journal of mathematical biology [J Math Biol] 2021 Nov 18; Vol. 83 (6-7), pp. 64. Date of Electronic Publication: 2021 Nov 18.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Regulatory Networks*
Uncertainty
Czasopismo naukowe
Tytuł :
Weighted gene co-expression network analysis (WGCNA) to explore genes responsive to Streptococcus oralis biofilm and immune infiltration analysis in human gingival fibroblasts cells.
Autorzy :
Chen X; Department of Stomatology, Affiliated Yueqing Hospital, Wenzhou Medical University; Institute of Stomatology, School and Hospital of Stomatology, Wenzhou Medical University, Wenzhou, Zhejiang, China.
Ma J; Department of Prosthodontics, School and Hospital of Stomatology, Wenzhou Medical University, Wenzhou, Zhejiang, China.
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Źródło :
Bioengineered [Bioengineered] 2021 Dec; Vol. 12 (1), pp. 1054-1065.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biofilms*
Gene Expression Regulation*
Gene Regulatory Networks*
Fibroblasts/*immunology
Fibroblasts/*microbiology
Gingiva/*pathology
Streptococcus oralis/*physiology
Humans ; Macrophages/metabolism ; Protein Interaction Maps/genetics
Czasopismo naukowe
Tytuł :
Consensus analysis via weighted gene co-expression network analysis (WGCNA) reveals genes participating in early phase of acute respiratory distress syndrome (ARDS) induced by sepsis.
Autorzy :
Fang Q; Department of Pulmonary Medicine, HwaMei Hospital, University of Chinese Academy of Sciences,Ningbo Institute of Life and Health Industry,University of Chinese Academy of Scienc, Ningbo, Zhejiang, China.
Wang Q; Department of Pulmonary Medicine, HwaMei Hospital, University of Chinese Academy of Sciences,Ningbo Institute of Life and Health Industry,University of Chinese Academy of Scienc, Ningbo, Zhejiang, China.
Zhou Z; Department of Pulmonary Medicine, HwaMei Hospital, University of Chinese Academy of Sciences,Ningbo Institute of Life and Health Industry,University of Chinese Academy of Scienc, Ningbo, Zhejiang, China.
Xie A; Department of Pulmonary Medicine, HwaMei Hospital, University of Chinese Academy of Sciences,Ningbo Institute of Life and Health Industry,University of Chinese Academy of Scienc, Ningbo, Zhejiang, China.
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Źródło :
Bioengineered [Bioengineered] 2021 Dec; Vol. 12 (1), pp. 1161-1172.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Regulatory Networks*
Respiratory Distress Syndrome/*etiology
Respiratory Distress Syndrome/*genetics
Sepsis/*complications
Biomarkers/metabolism ; Gene Expression Regulation ; Humans ; Protein Interaction Maps/genetics ; Reproducibility of Results
Czasopismo naukowe
Tytuł :
Prognostic alternative splicing regulatory network of RBM25 in hepatocellular carcinoma.
Autorzy :
Zhang YF; Department of Hepatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Wang YX; Department of Hepatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Zhang N; Department of Hepatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Lin ZH; Department of Hepatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Wang LR; Department of Hepatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Feng Y; Department of Hepatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Pan Q; Department of Hepatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Wang L; Department of Hepatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
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Źródło :
Bioengineered [Bioengineered] 2021 Dec; Vol. 12 (1), pp. 1202-1211.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Regulation, Neoplastic*
Gene Regulatory Networks*
Alternative Splicing/*genetics
Carcinoma, Hepatocellular/*genetics
Liver Neoplasms/*genetics
Nuclear Proteins/*metabolism
Adaptor Proteins, Signal Transducing/genetics ; Adaptor Proteins, Signal Transducing/metabolism ; Carcinoma, Hepatocellular/pathology ; Cell Cycle Proteins/genetics ; Cell Cycle Proteins/metabolism ; Cell Line, Tumor ; Chromosomal Proteins, Non-Histone/genetics ; Chromosomal Proteins, Non-Histone/metabolism ; Female ; Humans ; Liver Neoplasms/pathology ; Male ; Middle Aged ; Nuclear Proteins/genetics ; Prognosis
Czasopismo naukowe
Tytuł :
Blood transcriptomics to characterize key biological pathways and identify biomarkers for predicting mortality in melioidosis.
Autorzy :
Yimthin T; Faculty of Tropical Medicine, Department of Microbiology and Immunology, Mahidol University, Bangkok, Thailand.
Cliff JM; Faculty of Infectious and Tropical Diseases, Department of Immunology and Infection, London School of Hygiene & Tropical Medicine, London, UK.
Phunpang R; Faculty of Tropical Medicine, Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand.
Ekchariyawat P; Faculty of Tropical Medicine, Department of Microbiology and Immunology, Mahidol University, Bangkok, Thailand.; Faculty of Public Health, Department of Microbiology, Mahidol University, Bangkok, Thailand.
Kaewarpai T; Faculty of Tropical Medicine, Department of Microbiology and Immunology, Mahidol University, Bangkok, Thailand.
Lee JS; Faculty of Infectious and Tropical Diseases, Department of Immunology and Infection, London School of Hygiene & Tropical Medicine, London, UK.
Eckold C; Faculty of Medicine, Department of Surgery and Cancer, Imperial College London, London, UK.
Andrada M; Department of Tropical Medicine, Medical Microbiology, and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawaii, USA.
Thiansukhon E; Department of Medicine, Udon Thani Hospital, Udon Thani, Thailand.
Tanwisaid K; Department of Medicine, Nakhon Phanom Hospital, Nakhon Phanom, Thailand.
Chuananont S; Department of Medicine, Nakhon Phanom Hospital, Nakhon Phanom, Thailand.
Morakot C; Department of Medicine, Mukdahan Hospital, Mukdahan, Thailand.
Sangsa N; Department of Medicine, Roi Et Hospital, Roi Et, Thailand.
Silakun W; Department of Medicine, Buriram Hospital, Buriram, Thailand.
Chayangsu S; Department of Medicine, Surin Hospital, Surin, Thailand.
Buasi N; Department of Medicine, Sisaket Hospital, Sisaket, Thailand.
Day N; Faculty of Tropical Medicine, Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand.; Centre for Tropical Medicine, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Lertmemongkolchai G; Faculty of Associated Medical Science, Department of Clinical Immunology, Khon Kaen University, Khon Kaen, Thailand.; The Centre for Research and Development of Medical Diagnostic Laboratories, Khon Kaen University, Khon Kaen, Thailand.
Chantratita W; Faculty of Medicine Ramathibodi Hospital, Center for Medical Genomics, Mahidol University, Bangkok, Thailand.
Eoin West T; Division of Pulmonary and Critical Care Medicine, Harborview Medical Center, University of Washington, Seattle, Washington, USA.
Chantratita N; Faculty of Tropical Medicine, Department of Microbiology and Immunology, Mahidol University, Bangkok, Thailand.; Faculty of Tropical Medicine, Mahidol-Oxford Tropical Medicine Research Unit, Mahidol University, Bangkok, Thailand.
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Źródło :
Emerging microbes & infections [Emerg Microbes Infect] 2021 Dec; Vol. 10 (1), pp. 8-18.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Regulatory Networks*
Biomarkers/*blood
Gene Expression Profiling/*methods
Melioidosis/*mortality
Adult ; Aged ; Aged, 80 and over ; Case-Control Studies ; Female ; Gene Expression Regulation ; Humans ; Male ; Melioidosis/blood ; Melioidosis/genetics ; Middle Aged ; Prospective Studies ; Sequence Analysis, RNA ; Survival Analysis
Czasopismo naukowe
Tytuł :
Construction of lncRNA-related ceRNA regulatory network in diabetic subdermal endothelial cells.
Autorzy :
Wan J; Department of Burns, The First Affiliated Hospital of Nanchang University, Nanchang, Jiangxi China.
Liu B; Department of Burns and Surgery, The Fourth Affiliated Hospital of Guangxi Medical University, Liuzhou, Guangxi, China.
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Źródło :
Bioengineered [Bioengineered] 2021 Dec; Vol. 12 (1), pp. 2592-2602.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Regulatory Networks*
Dermis/*pathology
Diabetes Mellitus/*genetics
Diabetes Mellitus/*pathology
Endothelial Cells/*metabolism
RNA, Long Noncoding/*genetics
Gene Expression Profiling ; Gene Expression Regulation ; Humans ; RNA, Long Noncoding/metabolism ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Subcellular Fractions/metabolism
Czasopismo naukowe
Tytuł :
Identification of biomarkers related to Tumor-Infiltrating Lymphocytes (TILs) infiltration with gene co-expression network in colorectal cancer.
Autorzy :
Liao R; Department of Abdominal Oncology, West China Hospital of Sichuan University, Chengdu, Sichuan, P.R. China.
Ma QZ; Department of Thoracic Oncology, West China Hospital of Sichuan University, Chengdu, Sichuan P.R. China.
Zhou CY; Department of Radiation Oncology, The First Affiliated Hospital, College of Medical, Xi'an Jiaotong University, Xi'an, Shaanxi, P.R. China.
Li JJ; Department of Abdominal Oncology, West China Hospital of Sichuan University, Chengdu, Sichuan, P.R. China.
Weng NN; Department of Abdominal Oncology, West China Hospital of Sichuan University, Chengdu, Sichuan, P.R. China.
Yang Y; Department of Abdominal Oncology, West China Hospital of Sichuan University, Chengdu, Sichuan, P.R. China.
Zhu Q; Department of Abdominal Oncology, West China Hospital of Sichuan University, Chengdu, Sichuan, P.R. China.
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Źródło :
Bioengineered [Bioengineered] 2021 Dec; Vol. 12 (1), pp. 1676-1688.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Regulation, Neoplastic*
Gene Regulatory Networks*
Biomarkers, Tumor/*metabolism
Colorectal Neoplasms/*genetics
Colorectal Neoplasms/*immunology
Lymphocytes, Tumor-Infiltrating/*immunology
ADAM Proteins/genetics ; Cell Death ; Cell Line, Tumor ; Colorectal Neoplasms/pathology ; Gene Knockdown Techniques ; Genes, Neoplasm ; Humans ; Membrane Proteins/genetics ; Prognosis ; Reproducibility of Results ; Signal Transduction/genetics
Czasopismo naukowe
Tytuł :
A host-based whole genome sequencing study reveals novel risk loci associated with severity of influenza A(H1N1)pdm09 infection.
Autorzy :
Li M; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, People's Republic of China.
Chen Y; School of Public Health (Shenzhen), Sun Yat-sen University, Shenzhen, People's Republic of China.
Chen T; National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.
Hu S; Hunan Provincial Center for Disease Control and Prevention, Changsha, People's Republic of China.
Chen L; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, People's Republic of China.
Shen L; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, People's Republic of China.
Li F; Hunan Provincial Center for Disease Control and Prevention, Changsha, People's Republic of China.
Yang J; National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.
Sun Y; Changsha Central Hospital, Changsha 410004, People's Republic of China.
Wang D; National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.
He L; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, People's Republic of China.
Qin S; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, People's Republic of China.
Shu Y; School of Public Health (Shenzhen), Sun Yat-sen University, Shenzhen, People's Republic of China.; National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.
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Źródło :
Emerging microbes & infections [Emerg Microbes Infect] 2021 Dec; Vol. 10 (1), pp. 123-131.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Regulatory Networks*
Polymorphism, Single Nucleotide*
Influenza A Virus, H1N1 Subtype/*pathogenicity
Influenza, Human/*virology
Whole Genome Sequencing/*methods
Child ; Child, Preschool ; Female ; Genetic Association Studies ; High-Throughput Nucleotide Sequencing ; Humans ; Infant ; Influenza, Human/genetics ; Male ; Precision Medicine ; Severity of Illness Index
Czasopismo naukowe
Tytuł :
A graph convolutional neural network for gene expression data analysis with multiple gene networks.
Autorzy :
Yang H; School of Information, Central University of Finance and Economics, Beijing, China.
Zhuang Z; Department of EECE, University of Minnesota, Minneapolis, Minnesota, USA.
Pan W; Division of Biostatistics, University of Minnesota, Minneapolis, Minnesota, USA.
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Źródło :
Statistics in medicine [Stat Med] 2021 Nov 10; Vol. 40 (25), pp. 5547-5564. Date of Electronic Publication: 2021 Jul 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Data Analysis*
Gene Regulatory Networks*
Gene Expression ; Neural Networks, Computer
Czasopismo naukowe
Tytuł :
GeneCoNet: A web application server for constructing cancer patient-specific gene correlation networks with prognostic gene pairs.
Autorzy :
Park B; Department of Computer Engineering, Inha University, Incheon, 22212, South Korea.
Lee W; Department of Computer Engineering, Inha University, Incheon, 22212, South Korea.
Han K; Department of Computer Engineering, Inha University, Incheon, 22212, South Korea. Electronic address: http://biocomputing.inha.ac.kr.
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Źródło :
Computer methods and programs in biomedicine [Comput Methods Programs Biomed] 2021 Nov; Vol. 212, pp. 106465. Date of Electronic Publication: 2021 Oct 20.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Regulatory Networks*
Neoplasms*/genetics
Gene Expression Profiling ; Humans ; Prognosis
Czasopismo naukowe
Tytuł :
Revealing new therapeutic opportunities in hypertension through network-driven integrative genetic analysis and drug target prediction approach.
Autorzy :
Sharma K; Translational Research Lab, Department of Biotechnology, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi 110025, India.
Singh P; Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi 110025, India.
Amjad Beg M; Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi 110025, India.
Dohare R; Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi 110025, India. Electronic address: .
Athar F; Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi 110025, India.
Ali Syed M; Translational Research Lab, Department of Biotechnology, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi 110025, India. Electronic address: .
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Źródło :
Gene [Gene] 2021 Oct 30; Vol. 801, pp. 145856. Date of Electronic Publication: 2021 Jul 19.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Regulatory Networks*
Antihypertensive Agents/*pharmacology
Hypertension/*genetics
Protein Interaction Maps/*genetics
Drug Development/methods ; Gene Expression Profiling ; High-Throughput Screening Assays/methods ; Humans ; Hypertension/drug therapy ; Kininogens/chemistry ; Kininogens/genetics ; Limonins/chemistry ; Limonins/pharmacology ; MicroRNAs/genetics ; Models, Molecular ; Molecular Docking Simulation ; Telmisartan/chemistry ; Telmisartan/pharmacology ; Transcription Factors/genetics
Czasopismo naukowe
Tytuł :
A signature based on 11 autophagy genes for prognosis prediction of colorectal cancer.
Autorzy :
Chen S; Department of colorectal Surgery, Tianjin Union Medical Center, Tianjin, P.R. China.; Tianjin Institute of Coloproctology, Tianjin, P.R. China.
Wang Y; Department of Traditional Chinese Medicine, Shanghai Pudong New Area People's Hospital, Shanghai, P.R. China.
Wang B; Department of colorectal Surgery, Tianjin Union Medical Center, Tianjin, P.R. China.; Tianjin Institute of Coloproctology, Tianjin, P.R. China.
Zhang L; Department of colorectal Surgery, Tianjin Union Medical Center, Tianjin, P.R. China.; Tianjin Institute of Coloproctology, Tianjin, P.R. China.
Su Y; Department of colorectal Surgery, Tianjin Union Medical Center, Tianjin, P.R. China.; Tianjin Institute of Coloproctology, Tianjin, P.R. China.
Xu M; Department of colorectal Surgery, Tianjin Union Medical Center, Tianjin, P.R. China.; Tianjin Institute of Coloproctology, Tianjin, P.R. China.
Zhang M; Department of colorectal Surgery, Tianjin Union Medical Center, Tianjin, P.R. China.; Tianjin Institute of Coloproctology, Tianjin, P.R. China.
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Źródło :
PloS one [PLoS One] 2021 Oct 26; Vol. 16 (10), pp. e0258741. Date of Electronic Publication: 2021 Oct 26 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Regulatory Networks*
Biomarkers, Tumor/*genetics
Colorectal Neoplasms/*genetics
Computational Biology/*methods
Autophagy ; Databases, Genetic ; Female ; Gene Expression Regulation, Neoplastic ; Humans ; Male ; Nomograms ; Prognosis ; Regression Analysis ; Survival Analysis ; Tumor Microenvironment
Czasopismo naukowe
Tytuł :
A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data.
Autorzy :
Li H; Department of Biostatistics, School of Public Health, Yale University, New Haven, CT, 06511, USA.
Zhu B; Program of Computational Biology and Bioinformatics, Yale University, New Haven, CT, 06511, USA.
Xu Z; Department of Biostatistics, School of Public Health, Yale University, New Haven, CT, 06511, USA.
Adams T; Section of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, 06520, USA.
Kaminski N; Section of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, 06520, USA.
Zhao H; Department of Biostatistics, School of Public Health, Yale University, New Haven, CT, 06511, USA. .; Program of Computational Biology and Bioinformatics, Yale University, New Haven, CT, 06511, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Oct 26; Vol. 22 (1), pp. 524. Date of Electronic Publication: 2021 Oct 26.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Expression Profiling*
Gene Regulatory Networks*
Algorithms ; Humans ; RNA-Seq ; Sequence Analysis, RNA ; Single-Cell Analysis
Czasopismo naukowe
Tytuł :
TPSC: a module detection method based on topology potential and spectral clustering in weighted networks and its application in gene co-expression module discovery.
Autorzy :
Liu Y; Collage of Intelligent Systems Science and Engineering, Harbin Engineering University, Harbin, 150001, Heilongjiang, China.; Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Ye X; Collage of Intelligent Systems Science and Engineering, Harbin Engineering University, Harbin, 150001, Heilongjiang, China. .
Yu CY; Indiana University School of Medicine, Indianapolis, IN, 46202, USA.; Department of Biomedical Informatics, The Ohio State University, Columbus, OH, 43210, USA.
Shao W; Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Hou J; Collage of Intelligent Systems Science and Engineering, Harbin Engineering University, Harbin, 150001, Heilongjiang, China.
Feng W; Collage of Intelligent Systems Science and Engineering, Harbin Engineering University, Harbin, 150001, Heilongjiang, China.
Zhang J; Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Huang K; Indiana University School of Medicine, Indianapolis, IN, 46202, USA. .; Regenstrief Institute, Indianapolis, IN, 46202, USA. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Oct 25; Vol. 22 (Suppl 4), pp. 111. Date of Electronic Publication: 2021 Oct 25.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Expression Profiling*
Gene Regulatory Networks*
Algorithms ; Cluster Analysis ; Gene Expression
Czasopismo naukowe
Tytuł :
Coexistence of Hopf-born rotation and heteroclinic cycling in a time-delayed three-gene auto-regulated and mutually-repressed core genetic regulation network.
Autorzy :
Yang L; Hangzhou Dianzi University, Hangzhou, Zhejiang, China.
Sun W; Hangzhou Dianzi University, Hangzhou, Zhejiang, China.
Turcotte M; Hangzhou Dianzi University, Hangzhou, Zhejiang, China. Electronic address: .
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Źródło :
Journal of theoretical biology [J Theor Biol] 2021 Oct 21; Vol. 527, pp. 110813. Date of Electronic Publication: 2021 Jun 16.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Regulatory Networks*
Czasopismo naukowe
Tytuł :
Landscape and kinetic path quantify critical transitions in epithelial-mesenchymal transition.
Autorzy :
Lang J; Institute of Science and Technology for Brain-Inspired Intelligence, Shanghai, China; Shanghai Center for Mathematical Sciences, Fudan University, Shanghai, China.
Nie Q; Department of Mathematics, University of California, Irvine, Irvine, California.
Li C; Institute of Science and Technology for Brain-Inspired Intelligence, Shanghai, China; Shanghai Center for Mathematical Sciences, Fudan University, Shanghai, China; School of Mathematical Sciences, Fudan University, Shanghai, China. Electronic address: .
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Źródło :
Biophysical journal [Biophys J] 2021 Oct 19; Vol. 120 (20), pp. 4484-4500. Date of Electronic Publication: 2021 Sep 02.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Epithelial-Mesenchymal Transition*
Gene Regulatory Networks*
Kinetics ; Models, Theoretical
Czasopismo naukowe
Tytuł :
The LiaFSR Transcriptome Reveals an Interconnected Regulatory Network in Group A Streptococcus.
Autorzy :
Sanson MA; Division of Infectious Diseases, Department of Pediatrics, Center for Antimicrobial Resistance and Microbial Genomics, McGovern Medical School, University of Texas Health Sciences Center at Houston, Houston, Texas, USA.
Vega LA; Division of Infectious Diseases, Department of Pediatrics, Center for Antimicrobial Resistance and Microbial Genomics, McGovern Medical School, University of Texas Health Sciences Center at Houston, Houston, Texas, USA.
Shah B; Division of Infectious Diseases, Department of Pediatrics, Center for Antimicrobial Resistance and Microbial Genomics, McGovern Medical School, University of Texas Health Sciences Center at Houston, Houston, Texas, USA.
Regmi S; Division of Infectious Diseases, Department of Pediatrics, Center for Antimicrobial Resistance and Microbial Genomics, McGovern Medical School, University of Texas Health Sciences Center at Houston, Houston, Texas, USA.
Cubria MB; Division of Infectious Diseases, Department of Pediatrics, Center for Antimicrobial Resistance and Microbial Genomics, McGovern Medical School, University of Texas Health Sciences Center at Houston, Houston, Texas, USA.
Horstmann N; Department of Infectious Diseases, MD Anderson Cancer Center, Houston, Texas, USA.; Department of Genomic Medicine, MD Anderson Cancer Center, Houston, Texas, USA.
Shelburne SA 3rd; Department of Infectious Diseases, MD Anderson Cancer Center, Houston, Texas, USA.; Department of Genomic Medicine, MD Anderson Cancer Center, Houston, Texas, USA.
Flores AR; Division of Infectious Diseases, Department of Pediatrics, Center for Antimicrobial Resistance and Microbial Genomics, McGovern Medical School, University of Texas Health Sciences Center at Houston, Houston, Texas, USA.
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Źródło :
Infection and immunity [Infect Immun] 2021 Oct 15; Vol. 89 (11), pp. e0021521. Date of Electronic Publication: 2021 Aug 09.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Gene Expression Regulation, Bacterial*
Gene Regulatory Networks*
Transcriptome*
Streptococcus pyogenes/*genetics
Animals ; Bacterial Proteins/metabolism ; Bacterial Proteins/physiology ; Female ; Host Microbial Interactions ; Male ; Mice ; Repressor Proteins/metabolism ; Virulence Factors/genetics
Czasopismo naukowe
Tytuł :
Tailored graphical lasso for data integration in gene network reconstruction.
Autorzy :
Lingjærde C; MRC Biostatistics Unit, University of Cambridge, Forvie Site, Robinson Way, Cambridge, CB2 0SR, UK. .
Lien TG; Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital, Ullernchausseen 70, 0310, Oslo, Norway.
Borgan Ø; Department of Mathematics, University of Oslo, PO Box 1053 Blindern, 0316, Oslo, Norway.
Bergholtz H; Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital, Ullernchausseen 70, 0310, Oslo, Norway.
Glad IK; Department of Mathematics, University of Oslo, PO Box 1053 Blindern, 0316, Oslo, Norway.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Oct 15; Vol. 22 (1), pp. 498. Date of Electronic Publication: 2021 Oct 15.
Typ publikacji :
Journal Article
MeSH Terms :
Algorithms*
Gene Regulatory Networks*
Genomics ; Normal Distribution ; Protein Interaction Maps
Czasopismo naukowe
Tytuł :
Paths Through the Yeast Regulatory Network in Different Physiological States.
Autorzy :
Lesk AM; Department of Biochemistry and Molecular Biology and Center for Computational Biology and Bioinformatics, The Pennsylvania State University, University Park, PA 16802, USA. Electronic address: .
Konagurthu AS; Department of Data Science and Artificial Intelligence, Monash University, Clayton, VIC 3800, Australia.
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Źródło :
Journal of molecular biology [J Mol Biol] 2021 Oct 15; Vol. 433 (21), pp. 167181. Date of Electronic Publication: 2021 Jul 30.
Typ publikacji :
Journal Article
MeSH Terms :
Gene Regulatory Networks*
Cell Cycle/*genetics
Saccharomyces cerevisiae/*genetics
Saccharomyces cerevisiae Proteins/*genetics
Stress, Physiological/*genetics
Transcription Factors/*genetics
Computational Biology/methods ; DNA Damage ; Gene Expression Profiling ; Gene Expression Regulation, Fungal ; Gene Ontology ; Molecular Sequence Annotation ; Saccharomyces cerevisiae/growth & development ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/classification ; Saccharomyces cerevisiae Proteins/metabolism ; Signal Transduction ; Spores, Fungal/genetics ; Spores, Fungal/growth & development ; Spores, Fungal/metabolism ; Transcription Factors/classification ; Transcription Factors/metabolism
Czasopismo naukowe

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