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Wyszukujesz frazę ""Gene Regulatory Networks"" wg kryterium: Temat


Tytuł:
A Kinetic Finite Volume Discretization of the Multidimensional PIDE Model for Gene Regulatory Networks.
Autorzy:
Vághy MA; Faculty of Information Technology and Bionics, Pázmány Péter Catholic University, Práter u. 50/a, Budapest, 1083, Hungary. .
Otero-Muras I; Institute for Integrative Systems Biology, Spanish Council for Scientific Research, Carrer del Catedràtic Agustín Escardino Benlloch, 46980, Valencia, Spain.
Pájaro M; Department of Mathematics, Escola Superior de Enxeñaría Informática, University of Vigo, Campus Ourense, 32004, Ourense, Spain.
Szederkényi G; Faculty of Information Technology and Bionics, Pázmány Péter Catholic University, Práter u. 50/a, Budapest, 1083, Hungary.; Systems and Control Laboratory, ELKH Institute for Computer Science and Control (SZTAKI), Kende u. 13-17, Budapest, 1111, Hungary.
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Źródło:
Bulletin of mathematical biology [Bull Math Biol] 2024 Jan 22; Vol. 86 (2), pp. 22. Date of Electronic Publication: 2024 Jan 22.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*
Mathematical Concepts*
Models, Biological ; Kinetics ; Probability
Czasopismo naukowe
Tytuł:
A review on gene regulatory network reconstruction algorithms based on single cell RNA sequencing.
Autorzy:
Kim H; School of Systems Biomedical Science, Soongsil University, 369 Sangdo-Ro, Dongjak-Gu, Seoul, 06978, Republic of Korea.
Choi H; School of Systems Biomedical Science, Soongsil University, 369 Sangdo-Ro, Dongjak-Gu, Seoul, 06978, Republic of Korea.
Lee D; School of Art and Technology, Chung-Ang University, 4726 Seodong-Daero, Anseong-Si, Gyeonggi-Do, 17546, Republic of Korea. .
Kim J; School of Systems Biomedical Science, Soongsil University, 369 Sangdo-Ro, Dongjak-Gu, Seoul, 06978, Republic of Korea. .
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Źródło:
Genes & genomics [Genes Genomics] 2024 Jan; Vol. 46 (1), pp. 1-11. Date of Electronic Publication: 2023 Nov 30.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Gene Regulatory Networks*
Algorithms*
Gene Expression Regulation ; Transcriptome/genetics ; Sequence Analysis, RNA
Czasopismo naukowe
Tytuł:
MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles.
Autorzy:
Manosalva Pérez N; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.; Center for Plant Systems Biology, VIB, 9052, Ghent, Belgium.
Ferrari C; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.; Center for Plant Systems Biology, VIB, 9052, Ghent, Belgium.
Engelhorn J; Molecular Physiology Department, Heinrich-Heine University, 40225, Düsseldorf, Germany.; Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany.
Depuydt T; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.; Center for Plant Systems Biology, VIB, 9052, Ghent, Belgium.
Nelissen H; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.; Center for Plant Systems Biology, VIB, 9052, Ghent, Belgium.
Hartwig T; Molecular Physiology Department, Heinrich-Heine University, 40225, Düsseldorf, Germany.; Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany.; Cluster of Excellence on Plant Sciences, Düsseldorf, Germany.
Vandepoele K; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.; Center for Plant Systems Biology, VIB, 9052, Ghent, Belgium.; Bioinformatics Institute Ghent, Ghent University, 9052, Ghent, Belgium.
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Źródło:
The Plant journal : for cell and molecular biology [Plant J] 2024 Jan; Vol. 117 (1), pp. 280-301. Date of Electronic Publication: 2023 Oct 03.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*/genetics
Arabidopsis*/genetics
Arabidopsis*/metabolism
Chromatin/genetics ; Chromatin/metabolism ; Gene Expression Regulation, Plant/genetics ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Plants/metabolism
Czasopismo naukowe
Tytuł:
Information-incorporated gene network construction with FDR control.
Autorzy:
Wang H; Department of Statistics, Iowa State University, Ames, IA 50010, United States.
Qiu Y; Department of Statistics, Iowa State University, Ames, IA 50010, United States.
Guo H; Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50010, United States.
Yin Y; Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50010, United States.
Liu P; Department of Statistics, Iowa State University, Ames, IA 50010, United States.
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Źródło:
Bioinformatics (Oxford, England) [Bioinformatics] 2024 Mar 04; Vol. 40 (3).
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Algorithms*
Computer Simulation ; Genes, Plant ; Sample Size
Czasopismo naukowe
Tytuł:
A leaky gut dysregulates gene networks in the brain associated with immune activation, oxidative stress, and myelination in a mouse model of colitis.
Autorzy:
Boles JS; Department of Neuroscience, College of Medicine, University of Florida, Gainesville, FL, USA; Center for Translational Research in Neurodegenerative Disease, College of Medicine, University of Florida, Gainesville, FL, USA; McKnight Brain Institute, University of Florida, Gainesville, FL, USA. Electronic address: .
Krueger ME; Department of Neuroscience, College of Medicine, University of Florida, Gainesville, FL, USA; Center for Translational Research in Neurodegenerative Disease, College of Medicine, University of Florida, Gainesville, FL, USA; McKnight Brain Institute, University of Florida, Gainesville, FL, USA.
Jernigan JE; Department of Neuroscience, College of Medicine, University of Florida, Gainesville, FL, USA; Center for Translational Research in Neurodegenerative Disease, College of Medicine, University of Florida, Gainesville, FL, USA; McKnight Brain Institute, University of Florida, Gainesville, FL, USA; Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, USA.
Cole CL; Department of Neuroscience, College of Medicine, University of Florida, Gainesville, FL, USA; Center for Translational Research in Neurodegenerative Disease, College of Medicine, University of Florida, Gainesville, FL, USA; McKnight Brain Institute, University of Florida, Gainesville, FL, USA.
Neighbarger NK; Department of Neuroscience, College of Medicine, University of Florida, Gainesville, FL, USA; Center for Translational Research in Neurodegenerative Disease, College of Medicine, University of Florida, Gainesville, FL, USA; McKnight Brain Institute, University of Florida, Gainesville, FL, USA.
Uriarte Huarte O; Department of Neuroscience, College of Medicine, University of Florida, Gainesville, FL, USA; Center for Translational Research in Neurodegenerative Disease, College of Medicine, University of Florida, Gainesville, FL, USA; McKnight Brain Institute, University of Florida, Gainesville, FL, USA.
Tansey MG; Department of Neuroscience, College of Medicine, University of Florida, Gainesville, FL, USA; Center for Translational Research in Neurodegenerative Disease, College of Medicine, University of Florida, Gainesville, FL, USA; McKnight Brain Institute, University of Florida, Gainesville, FL, USA; Norman Fixel Institute for Neurological Diseases, University of Florida, Gainesville, FL, USA; Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, USA. Electronic address: .
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Źródło:
Brain, behavior, and immunity [Brain Behav Immun] 2024 Mar; Vol. 117, pp. 473-492. Date of Electronic Publication: 2024 Feb 08.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Colitis*/chemically induced
Humans ; Animals ; Mice ; Disease Models, Animal ; Reproducibility of Results ; Brain ; Oxidative Stress
Czasopismo naukowe
Tytuł:
Evolutionary rate covariation is a reliable predictor of co-functional interactions but not necessarily physical interactions.
Autorzy:
Little J; Department of Human Genetics, University of Utah, Salt Lake City, United States.
Chikina M; Department of Computational Biology, University of Pittsburgh, Pittsburgh, United States.
Clark NL; Department of Human Genetics, University of Utah, Salt Lake City, United States.; Department of Biological Sciences, University of Pittsburgh, Pittsburgh, United States.
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Źródło:
ELife [Elife] 2024 Feb 28; Vol. 12. Date of Electronic Publication: 2024 Feb 28.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Phylogeny ; Mutation ; Protein Domains
Czasopismo naukowe
Tytuł:
Signaling via a CD27-TRAF2-SHP-1 axis during naive T cell activation promotes memory-associated gene regulatory networks.
Autorzy:
Jaeger-Ruckstuhl CA; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA. Electronic address: .
Lo Y; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Fulton E; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Waltner OG; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Shabaneh TB; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Simon S; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Muthuraman PV; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Correnti CE; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Newsom OJ; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Engstrom IA; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Kanaan SB; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Bhise SS; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Peralta JMC; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Ruff R; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Seattle Children's Hospital, Seattle, WA 98105, USA.
Price JP; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Seattle Children's Hospital, Seattle, WA 98105, USA.
Stull SM; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Stevens AR; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Bugos G; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Kluesner MG; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Voillet V; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Muhunthan V; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Morrish F; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Olson JM; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Seattle Children's Hospital, Seattle, WA 98105, USA.
Gottardo R; Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Department of Statistics, University of Washington, Seattle, WA 98195, USA; Swiss Institute of Bioinformatics, University of Lausanne and Lausanne University Hospital, Lausanne 1011, Switzerland.
Sarthy JF; Seattle Children's Hospital, Seattle, WA 98105, USA; Basic Science Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Henikoff S; Basic Science Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Howard Hughes Medical Institute, Seattle, WA 98195, USA.
Sullivan LB; Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA.
Furlan SN; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Seattle Children's Hospital, Seattle, WA 98105, USA.
Riddell SR; Translational Sciences and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA 98109, USA; Department of Medicine, University of Washington, Seattle, WA 98195, USA. Electronic address: .
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Źródło:
Immunity [Immunity] 2024 Feb 13; Vol. 57 (2), pp. 287-302.e12.
Typ publikacji:
Journal Article
MeSH Terms:
CD28 Antigens*/metabolism
Gene Regulatory Networks*
TNF Receptor-Associated Factor 2/genetics ; TNF Receptor-Associated Factor 2/metabolism ; Signal Transduction ; Lymphocyte Activation ; Receptors, Antigen, T-Cell/metabolism ; Tumor Necrosis Factor Receptor Superfamily, Member 7/genetics ; Tumor Necrosis Factor Receptor Superfamily, Member 7/metabolism ; CD27 Ligand/genetics ; CD27 Ligand/metabolism ; CD8-Positive T-Lymphocytes
Czasopismo naukowe
Tytuł:
Enhancing circuit stability under growth feedback with supplementary repressive regulation.
Autorzy:
Stone A; School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ 85281, USA.
Rijal S; School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ 85281, USA.
Zhang R; School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ 85281, USA.
Tian XJ; School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ 85281, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2024 Feb 09; Vol. 52 (3), pp. 1512-1521.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Synthetic Biology*/methods
Computer Simulation ; Feedback ; Proteins/genetics
Czasopismo naukowe
Tytuł:
HetFCM: functional co-module discovery by heterogeneous network co-clustering.
Autorzy:
Tan H; School of Software, Shandong University, Jinan 250101, Shandong, China.; Joint SDU-NTU Centre for Artificial Intelligence Research, Shandong University, Jinan 250101, Shandong, China.
Guo M; College of Electrical and Information Engineering, Beijing Uni. of Civil Eng. and Arch., Beijing 100044, China.
Chen J; College of Agronomy & Biotechnolog, China Agricultural University, Beijing 100193, China.
Wang J; Joint SDU-NTU Centre for Artificial Intelligence Research, Shandong University, Jinan 250101, Shandong, China.
Yu G; School of Software, Shandong University, Jinan 250101, Shandong, China.; Joint SDU-NTU Centre for Artificial Intelligence Research, Shandong University, Jinan 250101, Shandong, China.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2024 Feb 09; Vol. 52 (3), pp. e16.
Typ publikacji:
Journal Article
MeSH Terms:
Breast Neoplasms*/genetics
Cluster Analysis*
Gene Regulatory Networks*
Zea mays*/genetics
Female ; Humans ; Gene Expression Profiling/methods ; MicroRNAs/genetics ; Phenotype
Czasopismo naukowe
Tytuł:
Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade-off between secondary and primary metabolism.
Autorzy:
Qiu S; Department of Engineering Science, University of Oxford, Oxford, UK.; School of Food and Health, Beijing Technology and Business University, Beijing, China.
Huang Y; School of Computer Science and Engineering, Beihang University, Beijing, China.
Liang S; Department of Life Science, Imperial College London, London, UK.
Zeng H; School of Food and Health, Beijing Technology and Business University, Beijing, China.
Yang A; Department of Engineering Science, University of Oxford, Oxford, UK.
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Źródło:
Microbial biotechnology [Microb Biotechnol] 2024 Feb; Vol. 17 (2), pp. e14425.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Probiotics*
Databases, Factual ; Transcription Factors ; Transcriptome
Czasopismo naukowe
Tytuł:
A Data-Distribution and Successive Spline Points based discretization approach for evolving gene regulatory networks from scRNA-Seq time-series data using Cartesian Genetic Programming.
Autorzy:
da Silva JEH; Universidade Federal de Juiz de Fora, Juiz de Fora, MG, Brazil. Electronic address: .
de Carvalho PC; Universidade Federal de Juiz de Fora, Juiz de Fora, MG, Brazil. Electronic address: .
Camata JJ; Universidade Federal de Juiz de Fora, Juiz de Fora, MG, Brazil. Electronic address: .
de Oliveira IL; Universidade Federal de Juiz de Fora, Juiz de Fora, MG, Brazil. Electronic address: .
Bernardino HS; Universidade Federal de Juiz de Fora, Juiz de Fora, MG, Brazil. Electronic address: .
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Źródło:
Bio Systems [Biosystems] 2024 Feb; Vol. 236, pp. 105126. Date of Electronic Publication: 2024 Jan 24.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*/genetics
Single-Cell Gene Expression Analysis*
Tosyl Compounds*
Algorithms ; Systems Biology ; Gene Expression Profiling/methods
Czasopismo naukowe
Tytuł:
Duplicated gene networks promote 'hopeful' phenotypic variation.
Autorzy:
Parisod C; Department of Biology, University of Fribourg, Fribourg, Switzerland. Electronic address: .
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Źródło:
Trends in genetics : TIG [Trends Genet] 2024 Feb; Vol. 40 (2), pp. 109-111. Date of Electronic Publication: 2024 Jan 24.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Gene Duplication*
Evolution, Molecular ; Genome
Czasopismo naukowe
Tytuł:
A method to improve the prediction performance of cancer-gene association by screening negative training samples through gene network data.
Autorzy:
Xu M; Faculty of Computer Science & Information Technology, Universiti Malaya, Kuala Lumpur, 50603 Malaysia; School of Energy and Intelligence Engineering, Henan University of Animal Husbandry and Economy, #6 North Longzihu Rd, Zhengzhou 450000, China. Electronic address: .
Abdullah NA; Faculty of Computer Science & Information Technology, Universiti Malaya, Kuala Lumpur, 50603 Malaysia. Electronic address: .
Md Sabri AQ; Faculty of Computer Science & Information Technology, Universiti Malaya, Kuala Lumpur, 50603 Malaysia. Electronic address: .
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Źródło:
Computational biology and chemistry [Comput Biol Chem] 2024 Feb; Vol. 108, pp. 107997. Date of Electronic Publication: 2023 Dec 09.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*/genetics
Neoplasms*/genetics
Humans ; Early Detection of Cancer ; Algorithms ; Machine Learning
Czasopismo naukowe
Tytuł:
Parameterization of asymmetric sigmoid functions in weighted gene co-expression network analysis.
Autorzy:
Karabekmez ME; Istanbul Medeniyet University, Department of Bioengineering, Istanbul, Turkey. Electronic address: .
Yarıcı M; Istanbul Medeniyet University, Department of Bioengineering, Istanbul, Turkey.
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Źródło:
Computational biology and chemistry [Comput Biol Chem] 2024 Feb; Vol. 108, pp. 107998. Date of Electronic Publication: 2023 Dec 05.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Gene Expression Profiling*/methods
Transcriptome
Czasopismo naukowe
Tytuł:
A network-based approach to understanding gene-biological processes affecting economically important traits of Nelore cattle.
Autorzy:
Corrêa MSL; Professor Edson Antônio Velano University (UNIFENAS), Alfenas, Minas Gerais, Brazil.
Silva EN; Professor Edson Antônio Velano University (UNIFENAS), Alfenas, Minas Gerais, Brazil.; Federal University of Alfenas (UNIFAL), Alfenas, Minas Gerais, Brazil.
Dos Santos TCF; Professor Edson Antônio Velano University (UNIFENAS), Alfenas, Minas Gerais, Brazil.; National Center for Research in Energy and Materials (CNPEM), Campinas, São Paulo, Brazil.
Simielli Fonseca LF; School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.
Magalhães AFB; Department of Animal Science, Federal University of Vales do Jequitinhonha e Mucuri (UFVJM), Diamantina, Minas Gerais, Brazil.
Verardo LL; Department of Animal Science, Federal University of Vales do Jequitinhonha e Mucuri (UFVJM), Diamantina, Minas Gerais, Brazil.
de Albuquerque LG; School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.
Silva DBDS; Professor Edson Antônio Velano University (UNIFENAS), Alfenas, Minas Gerais, Brazil.; School of Agricultural and Veterinarian Sciences, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.
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Źródło:
Animal genetics [Anim Genet] 2024 Feb; Vol. 55 (1), pp. 55-65. Date of Electronic Publication: 2023 Dec 19.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Meat*/analysis
Cattle/genetics ; Animals ; Phenotype ; Gene Expression
Czasopismo naukowe
Tytuł:
Recurrent urinary tract infection genetic risk: a systematic review and gene network analysis.
Autorzy:
Isali I; Department of Urology, University Hospitals, Cleveland Medical Center, Cleveland, OH, USA.
Wong TR; Department of Urology, University Hospitals, Cleveland Medical Center, Cleveland, OH, USA.
Batur AF; Department of Urology, University Hospitals, Cleveland Medical Center, Cleveland, OH, USA.
Wu CW; Department of Urology, University Hospitals, Cleveland Medical Center, Cleveland, OH, USA.; Department of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Schumacher FR; Case Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, OH, USA.; Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Pope R; Department of Urology, University Hospitals, Cleveland Medical Center, Cleveland, OH, USA.
Hijaz A; Department of Urology, University Hospitals, Cleveland Medical Center, Cleveland, OH, USA.
Sheyn D; Department of Urology, University Hospitals, Cleveland Medical Center, Cleveland, OH, USA. .
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Źródło:
International urogynecology journal [Int Urogynecol J] 2024 Feb; Vol. 35 (2), pp. 259-271. Date of Electronic Publication: 2023 Nov 02.
Typ publikacji:
Systematic Review; Journal Article; Review
MeSH Terms:
Gene Regulatory Networks*
Signal Transduction*
Humans
Czasopismo naukowe
Tytuł:
The YAP1/TAZ-TEAD transcriptional network regulates gene expression at neuromuscular junctions in skeletal muscle fibers.
Autorzy:
Gessler L; Institute of Biochemistry, Medical Faculty, Friedrich-Alexander-University of Erlangen-Nürnberg, 91054 Erlangen, Germany.
Huraskin D; Institute of Biochemistry, Medical Faculty, Friedrich-Alexander-University of Erlangen-Nürnberg, 91054 Erlangen, Germany.
Jian Y; Institute of Biochemistry, Medical Faculty, Friedrich-Alexander-University of Erlangen-Nürnberg, 91054 Erlangen, Germany.
Eiber N; Institute of Biochemistry, Medical Faculty, Friedrich-Alexander-University of Erlangen-Nürnberg, 91054 Erlangen, Germany.
Hu Z; Nephrology Division, Department of Medicine, Baylor College of Medicine, Houston, TX, USA.
Prószyński TJ; Łukasiewicz Research Network-PORT Polish Center for Technology Development, Wrocław, Poland.
Hashemolhosseini S; Institute of Biochemistry, Medical Faculty, Friedrich-Alexander-University of Erlangen-Nürnberg, 91054 Erlangen, Germany.; Muscle Research Center, Friedrich-Alexander-University of Erlangen-Nürnberg, 91054 Erlangen, Germany.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2024 Jan 25; Vol. 52 (2), pp. 600-624.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Transcription Factors*/genetics
Transcription Factors*/metabolism
Mice ; Animals ; Adaptor Proteins, Signal Transducing/genetics ; Adaptor Proteins, Signal Transducing/metabolism ; Muscle Fibers, Skeletal/metabolism ; Neuromuscular Junction/metabolism ; Mice, Knockout ; Gene Expression ; Receptors, Cholinergic/genetics ; Receptors, Cholinergic/metabolism ; Muscle, Skeletal/metabolism
Czasopismo naukowe
Tytuł:
Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference.
Autorzy:
Tjärnberg A; Center for Developmental Genetics, New York University, New York, NY, 10003, USA. .; Center For Genomics and Systems Biology, NYU, New York, NY, 10008, USA. .; Department of Biology, NYU, New York, NY, 10008, USA. .; Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, 10010, USA. .; Department of Neuro-Science, University of Wisconsin-Madison - Waisman Center, Madison, USA. .
Beheler-Amass M; Center For Genomics and Systems Biology, NYU, New York, NY, 10008, USA.; Department of Biology, NYU, New York, NY, 10008, USA.
Jackson CA; Center For Genomics and Systems Biology, NYU, New York, NY, 10008, USA.; Department of Biology, NYU, New York, NY, 10008, USA.
Christiaen LA; Center for Developmental Genetics, New York University, New York, NY, 10003, USA.; Department of Biology, NYU, New York, NY, 10008, USA.; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, Norway.; Department of Heart Disease, Haukeland University Hospital, Bergen, Norway.
Gresham D; Center For Genomics and Systems Biology, NYU, New York, NY, 10008, USA.; Department of Biology, NYU, New York, NY, 10008, USA.
Bonneau R; Center For Genomics and Systems Biology, NYU, New York, NY, 10008, USA. bonneau.richard@gene.com.; Department of Biology, NYU, New York, NY, 10008, USA. bonneau.richard@gene.com.; Flatiron Institute, Center for Computational Biology, Simons Foundation, New York, NY, 10010, USA. bonneau.richard@gene.com.; Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, NY, 10003, USA. bonneau.richard@gene.com.; Center For Data Science, NYU, New York, NY, 10008, USA. bonneau.richard@gene.com.; Prescient Design, a Genentech accelerator, New York, NY, 10010, USA. bonneau.richard@gene.com.
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Źródło:
Genome biology [Genome Biol] 2024 Jan 18; Vol. 25 (1), pp. 24. Date of Electronic Publication: 2024 Jan 18.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Saccharomyces cerevisiae*/genetics
Algorithms ; Leukocytes, Mononuclear ; Transcription Factors/genetics
Czasopismo naukowe
Tytuł:
Evolution of the gene regulatory network of body axis by enhancer hijacking in amphioxus.
Autorzy:
Shi C; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Chen S; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Liu H; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Pan R; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Li S; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Wang Y; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Wu X; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Li J; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Li X; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Xing C; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Liu X; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Wang Y; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Qu Q; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Li G; State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
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Źródło:
ELife [Elife] 2024 Jan 17; Vol. 13. Date of Electronic Publication: 2024 Jan 17.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Lancelets*/genetics
Female ; Animals ; Animals, Genetically Modified ; DNA, Intergenic ; Embryonic Development ; Transforming Growth Factor beta
Czasopismo naukowe
Tytuł:
A meta-analysis of Boolean network models reveals design principles of gene regulatory networks.
Autorzy:
Kadelka C; Department of Mathematics, Iowa State University, Ames, IA 50011, USA.
Butrie TM; Department of Aerospace Engineering, Iowa State University, Ames, IA 50011, USA.
Hilton E; Department of Computer Science, Iowa State University, Ames, IA 50011, USA.; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, USA.
Kinseth J; Department of Mathematics, Iowa State University, Ames, IA 50011, USA.
Schmidt A; Department of Computer Science, Iowa State University, Ames, IA 50011, USA.
Serdarevic H; Department of Mathematics, Iowa State University, Ames, IA 50011, USA.
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Źródło:
Science advances [Sci Adv] 2024 Jan 12; Vol. 10 (2), pp. eadj0822. Date of Electronic Publication: 2024 Jan 12.
Typ publikacji:
Meta-Analysis; Journal Article
MeSH Terms:
Gene Regulatory Networks*
Models, Genetic*
Algorithms
Czasopismo naukowe

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