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Tytuł:
Gene regulatory network reconfiguration in direct lineage reprogramming.
Autorzy:
Kamimoto K; Department of Developmental Biology, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Department of Genetics, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Center of Regenerative Medicine, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA.
Adil MT; Department of Developmental Biology, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Department of Genetics, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Center of Regenerative Medicine, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA.
Jindal K; Department of Developmental Biology, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Department of Genetics, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Center of Regenerative Medicine, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA.
Hoffmann CM; Department of Developmental Biology, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Department of Genetics, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Center of Regenerative Medicine, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA.
Kong W; Department of Developmental Biology, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Department of Genetics, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Center of Regenerative Medicine, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA.
Yang X; Department of Developmental Biology, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Department of Genetics, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Center of Regenerative Medicine, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA.
Morris SA; Department of Developmental Biology, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Department of Genetics, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA; Center of Regenerative Medicine, Washington University School of Medicine in St. Louis, 660 S. Euclid Avenue, Campus Box 8103, St. Louis, MO 63110, USA. Electronic address: .
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Źródło:
Stem cell reports [Stem Cell Reports] 2023 Jan 10; Vol. 18 (1), pp. 97-112. Date of Electronic Publication: 2022 Dec 29.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Gene Expression Regulation*
Transcription Factors/genetics ; Transcriptome ; Fibroblasts ; Cellular Reprogramming/genetics
Czasopismo naukowe
Szczegóły
Tytuł:
Deciphering Transcriptional Networks during Human Cardiac Development.
Autorzy:
Canac R; Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
Cimarosti B; Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
Girardeau A; Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
Forest V; Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
Olchesqui P; Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
Poschmann J; INSERM, Nantes Université, Center for Research in Transplantation and Translational Immunology, UMR 1064, ITUN, F-44000 Nantes, France.
Redon R; Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
Lemarchand P; Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
Gaborit N; Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
Lamirault G; Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
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Źródło:
Cells [Cells] 2022 Dec 03; Vol. 11 (23). Date of Electronic Publication: 2022 Dec 03.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Heart*
Humans ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Gene Expression Regulation ; Cell Differentiation/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Inference of gene regulatory networks based on the Light Gradient Boosting Machine.
Autorzy:
Du Z; Guangdong Laboratory of Artificial Intelligence and Digital Economy (SZ), Shenzhen University, PR China. Electronic address: .
Zhong X; Guangdong Laboratory of Artificial Intelligence and Digital Economy (SZ), Shenzhen University, PR China. Electronic address: .
Wang F; Center for Biosafety Research and Strategy, Tianjin University, PR China. Electronic address: .
Uversky VN; Department of Molecular Medicine and USF Health Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, 12901 Bruce B. Downs Blvd. MDC07, Tampa, FL, USA; Laboratory of New Methods in Biology, Institute for Biological Instrumentation, Russian Academy of Sciences, Institutskaya str., 7, Pushchino, Moscow 142290, Russia. Electronic address: .
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Źródło:
Computational biology and chemistry [Comput Biol Chem] 2022 Dec; Vol. 101, pp. 107769. Date of Electronic Publication: 2022 Sep 19.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*/genetics
Algorithms*
Escherichia coli/genetics ; Area Under Curve ; ROC Curve ; Computational Biology/methods
Czasopismo naukowe
Szczegóły
Tytuł:
Relationship between drug targets and drug-signature networks: a network-based genome-wide landscape.
Autorzy:
Lee CW; Department of Biomedical Informatics, CHA University School of Medicine, CHA University, Seongnam, 13488, South Korea.; Institute of Basic Medical Sciences, School of Medicine, CHA University, Seongnam, 13488, South Korea.
Kim SM; Department of Biomedical Informatics, CHA University School of Medicine, CHA University, Seongnam, 13488, South Korea.; Institute of Basic Medical Sciences, School of Medicine, CHA University, Seongnam, 13488, South Korea.
Sa S; Department of Biomedical Informatics, CHA University School of Medicine, CHA University, Seongnam, 13488, South Korea.; Institute of Basic Medical Sciences, School of Medicine, CHA University, Seongnam, 13488, South Korea.
Hong M; Department of Biomedical Informatics, CHA University School of Medicine, CHA University, Seongnam, 13488, South Korea.; Institute of Basic Medical Sciences, School of Medicine, CHA University, Seongnam, 13488, South Korea.
Nam SM; Department of Ophthalmology, CHA Bundang Medical Center, CHA University, Seongnam, South Korea. .
Han HW; Department of Biomedical Informatics, CHA University School of Medicine, CHA University, Seongnam, 13488, South Korea. .; Institute of Basic Medical Sciences, School of Medicine, CHA University, Seongnam, 13488, South Korea. .
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Źródło:
BMC medical genomics [BMC Med Genomics] 2023 Jan 30; Vol. 16 (1), pp. 17. Date of Electronic Publication: 2023 Jan 30.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Drug Delivery Systems*
Genome ; Databases, Factual
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A linear reciprocal relationship between robustness and plasticity in homeostatic biological networks.
Autorzy:
Hatakeyama TS; Department of Basic Science, University of Tokyo, Meguro-ku, Tokyo, Japan.
Kaneko K; Department of Basic Science, University of Tokyo, Meguro-ku, Tokyo, Japan.; Center for Complex Systems Biology, Universal Biology Institute, University of Tokyo, Komaba, Tokyo, Japan.; The Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark.
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Źródło:
PloS one [PLoS One] 2023 Jan 26; Vol. 18 (1), pp. e0277181. Date of Electronic Publication: 2023 Jan 26 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Biological Evolution*
Homeostasis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Distinct COPD subtypes in former smokers revealed by gene network perturbation analysis.
Autorzy:
Buschur KL; Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Joint CMU-Pitt PhD Program in Computational Biology, Pittsburgh, PA, USA.; Division of General Medicine, Columbia University Medical Center, New York, NY, USA.; New York Genome Center, New York, NY, USA.
Riley C; Division of Pulmonary Medicine, Department of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Saferali A; Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Castaldi P; Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Zhang G; Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Aguet F; The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Ardlie KG; The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Durda P; Department of Pathology and Laboratory Medicine, Larner College of Medicine, University of Vermont, Burlington, VT, USA.
Craig Johnson W; Department of Biostatistics, University of Washington, Seattle, WA, USA.
Kasela S; New York Genome Center, New York, NY, USA.; Department of Systems Biology, Columbia University, New York, NY, USA.
Liu Y; Department of Medicine, Division of Cardiology, Duke Molecular Physiology Institute, Duke University Medical Center, Durham, NC, USA.
Manichaikul A; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA.
Rich SS; Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA.
Rotter JI; The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, The Lundquist Institute for Biomedical Innovation at Harbor-UCLA Medical Center, Torrance, CA, USA.
Smith J; Northwest Genome Center, University of Washington, Seattle, WA, USA.
Taylor KD; The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, The Lundquist Institute for Biomedical Innovation at Harbor-UCLA Medical Center, Torrance, CA, USA.
Tracy RP; Department of Pathology and Laboratory Medicine, Larner College of Medicine, University of Vermont, Burlington, VT, USA.; Department of Biochemistry, Larner College of Medicine, University of Vermont, Burlington, VT, USA.
Lappalainen T; New York Genome Center, New York, NY, USA.; Department of Systems Biology, Columbia University, New York, NY, USA.; Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, Stockholm, Sweden.
Graham Barr R; Division of General Medicine, Columbia University Medical Center, New York, NY, USA.
Sciurba F; Division of Pulmonary Medicine, Department of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Hersh CP; Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Benos PV; Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA. .; Joint CMU-Pitt PhD Program in Computational Biology, Pittsburgh, PA, USA. .; Department of Epidemiology, University of Florida, 2004 Mowry Rd, Gainesville, FL, 32603, USA. .
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Źródło:
Respiratory research [Respir Res] 2023 Jan 25; Vol. 24 (1), pp. 30. Date of Electronic Publication: 2023 Jan 25.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*/genetics
Pulmonary Disease, Chronic Obstructive*/diagnosis
Pulmonary Disease, Chronic Obstructive*/genetics
Humans ; Smokers ; Genome-Wide Association Study/methods ; Prognosis
Czasopismo naukowe
Szczegóły
Tytuł:
A Comparison of Weighted Stochastic Simulation Methods for the Analysis of Genetic Circuits.
Autorzy:
Ahmadi M; Department of Computer Science and Engineering, University of South Florida, Tampa, Florida33620-9951, United States.
Thomas PJ; Department of Biomedical Engineering, University of Utah, Salt Lake City, Utah84112, United States.
Buecherl L; Department of Electrical, Computer, and Energy Engineering, University of Colorado Boulder, Boulder, Colorado80309-0401, United States.
Winstead C; Department of Electrical and Computer Engineering, Utah State University, Logan, Utah84322-1400, United States.
Myers CJ; Department of Electrical, Computer, and Energy Engineering, University of Colorado Boulder, Boulder, Colorado80309-0401, United States.
Zheng H; Department of Computer Science and Engineering, University of South Florida, Tampa, Florida33620-9951, United States.
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Źródło:
ACS synthetic biology [ACS Synth Biol] 2023 Jan 20; Vol. 12 (1), pp. 287-304. Date of Electronic Publication: 2022 Dec 30.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Algorithms*
Gene Regulatory Networks*/genetics
Stochastic Processes ; Computer Simulation ; Probability ; Models, Biological
Czasopismo naukowe
Szczegóły
Tytuł:
MAGNET: A web-based application for gene set enrichment analysis using macrophage data sets.
Autorzy:
Chen SY; Division of Rheumatology, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America.
Gadhvi G; Division of Rheumatology, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America.
Winter DR; Division of Rheumatology, Feinberg School of Medicine, Northwestern University, Chicago, IL, United States of America.
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Źródło:
PloS one [PLoS One] 2023 Jan 11; Vol. 18 (1), pp. e0272166. Date of Electronic Publication: 2023 Jan 11 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Magnets*
Animals ; Mice ; Software ; Genomics/methods ; Internet
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A set-theoretic definition of cell types with an algebraic structure on gene regulatory networks and application in annotation of RNA-seq data.
Autorzy:
Okano Y; Department of Physiology, Keio University School of Medicine, 35, Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan.
Kase Y; Department of Physiology, Keio University School of Medicine, 35, Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan.
Okano H; Department of Physiology, Keio University School of Medicine, 35, Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan. Electronic address: .
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Źródło:
Stem cell reports [Stem Cell Reports] 2023 Jan 10; Vol. 18 (1), pp. 113-130. Date of Electronic Publication: 2022 Nov 17.
Typ publikacji:
Journal Article
MeSH Terms:
RNA*/genetics
Gene Regulatory Networks*
RNA-Seq ; Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods ; Gene Expression Profiling/methods
Czasopismo naukowe
Szczegóły
Tytuł:
A pseudo-value regression approach for differential network analysis of co-expression data.
Autorzy:
Ahn S; Department of Biostatistics, University of Florida, Gainesville, USA.
Grimes T; Department of Mathematics and Statistics, University of North Florida, Jacksonville, USA.
Datta S; Department of Biostatistics, University of Florida, Gainesville, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Jan 09; Vol. 24 (1), pp. 8. Date of Electronic Publication: 2023 Jan 09.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Gene Expression Profiling*/methods
Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
GeneFriends: gene co-expression databases and tools for humans and model organisms.
Autorzy:
Raina P; Integrative Genomics of Ageing Group, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool L7 8TX, UK.
Guinea R; Integrative Genomics of Ageing Group, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool L7 8TX, UK.
Chatsirisupachai K; Integrative Genomics of Ageing Group, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool L7 8TX, UK.
Lopes I; Integrative Genomics of Ageing Group, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool L7 8TX, UK.
Farooq Z; Integrative Genomics of Ageing Group, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool L7 8TX, UK.
Guinea C; UCAL - Universidad de Ciencias y Artes de América Latina, Faculty of Design, Lima 15026, Perú.
Solyom CA; Integrative Genomics of Ageing Group, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool L7 8TX, UK.
de Magalhães JP; Integrative Genomics of Ageing Group, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool L7 8TX, UK.; Institute of Inflammation and Ageing, University of Birmingham, Queen Elizabeth Hospital, Mindelsohn Way, Birmingham B15 2WB, UK.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D145-D158.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Genetic*
Gene Expression Profiling*
Gene Regulatory Networks*
Animals ; Humans ; RNA ; Sequence Analysis, RNA
Czasopismo naukowe
Szczegóły
Tytuł:
Co-expression Gene Networks and Machine-learning Algorithms Unveil a Core Genetic Toolkit for Reproductive Division of Labour in Rudimentary Insect Societies.
Autorzy:
Favreau E; Department of Genetics, Environment, Evolution, University College London, London WC1E 6BT, United Kingdom.
Geist KS; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa 50011.
Wyatt CDR; Department of Genetics, Environment, Evolution, University College London, London WC1E 6BT, United Kingdom.
Toth AL; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa 50011.
Sumner S; Department of Genetics, Environment, Evolution, University College London, London WC1E 6BT, United Kingdom.
Rehan SM; Department of Biology, York University, Toronto, ON M3J 1P3, Canada.
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Źródło:
Genome biology and evolution [Genome Biol Evol] 2023 Jan 04; Vol. 15 (1).
Typ publikacji:
Meta-Analysis; Journal Article
MeSH Terms:
Gene Regulatory Networks*
Wasps*/genetics
Bees/genetics ; Animals ; Social Behavior ; Transcriptome ; Reproduction/genetics ; Machine Learning
Czasopismo naukowe
Szczegóły
Tytuł:
Identification of key module and hub genes in pulpitis using weighted gene co-expression network analysis.
Autorzy:
Zhang D; Stomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Zhejiang Provincial Clinical Research Center for Oral Diseases, Key Laboratory of Oral Biomedical Research of Zhejiang Province, Cancer Center of Zhejiang University, Hangzhou, 310006, China.
Zheng C; Stomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Zhejiang Provincial Clinical Research Center for Oral Diseases, Key Laboratory of Oral Biomedical Research of Zhejiang Province, Cancer Center of Zhejiang University, Hangzhou, 310006, China.
Zhu T; Stomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Zhejiang Provincial Clinical Research Center for Oral Diseases, Key Laboratory of Oral Biomedical Research of Zhejiang Province, Cancer Center of Zhejiang University, Hangzhou, 310006, China.
Yang F; Stomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Zhejiang Provincial Clinical Research Center for Oral Diseases, Key Laboratory of Oral Biomedical Research of Zhejiang Province, Cancer Center of Zhejiang University, Hangzhou, 310006, China.
Zhou Y; Stomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Zhejiang Provincial Clinical Research Center for Oral Diseases, Key Laboratory of Oral Biomedical Research of Zhejiang Province, Cancer Center of Zhejiang University, Hangzhou, 310006, China. .
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Źródło:
BMC oral health [BMC Oral Health] 2023 Jan 02; Vol. 23 (1), pp. 2. Date of Electronic Publication: 2023 Jan 02.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*/genetics
Pulpitis*/genetics
Animals ; Rats ; Social Group ; Dental Pulp Capping ; Gene Expression Profiling
Czasopismo naukowe
Szczegóły
Tytuł:
A pituitary gene network linking vgll3 to regulators of sexual maturation in male Atlantic salmon.
Autorzy:
Ahi EP; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland. Electronic address: .
Sinclair-Waters M; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland; Centre d'Ecologie Fonctionelle et Evolutive, Centre National de la Recherche Scientifique, Montpellier, France. Electronic address: https://twitter.com/Marionswaters.
Donner I; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland. Electronic address: .
Primmer CR; Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland; Institute of Biotechnology, Helsinki Institute of Life Science (HiLIFE), University of Helsinki, Finland. Electronic address: .
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Źródło:
Comparative biochemistry and physiology. Part A, Molecular & integrative physiology [Comp Biochem Physiol A Mol Integr Physiol] 2023 Jan; Vol. 275, pp. 111337. Date of Electronic Publication: 2022 Oct 29.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Salmo salar*/genetics
Male ; Animals ; Sexual Maturation/genetics ; Pituitary Gland ; Genotype
Czasopismo naukowe
Szczegóły
Tytuł:
Temporary and permanent control of partially specified Boolean networks.
Autorzy:
Brim L; Faculty of Informatics, Botanická 68A, Masaryk University, 60200 Brno, Czech Republic. Electronic address: .
Pastva S; Faculty of Informatics, Botanická 68A, Masaryk University, 60200 Brno, Czech Republic. Electronic address: .
Šafránek D; Faculty of Informatics, Botanická 68A, Masaryk University, 60200 Brno, Czech Republic. Electronic address: .
Šmijáková E; Faculty of Informatics, Botanická 68A, Masaryk University, 60200 Brno, Czech Republic. Electronic address: .
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Źródło:
Bio Systems [Biosystems] 2023 Jan; Vol. 223, pp. 104795. Date of Electronic Publication: 2022 Oct 29.
Typ publikacji:
Journal Article
MeSH Terms:
Systems Biology*
Gene Regulatory Networks*
Algorithms
Czasopismo naukowe
Szczegóły
Tytuł:
Investigating potential ferroptosis-related differentially expressed genes of UVB-induced skin photodamage.
Autorzy:
Deng L; Department of Dermatology, The First Affiliated Hospital, Chongqing Medical University, Chongqing, China.; Department of Dermatology, The Affiliated Hospital, Southwest Medical University, Luzhou, China.
Li Y; Department of Nuclear Medicine, The Affiliated Hospital, Southwest Medical University, Luzhou, China.
Wu Q; Department of Dermatology, The First Affiliated Hospital, Chongqing Medical University, Chongqing, China.; Department of Dermatology, Qijiang Hospital of the First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Zeng Q; Department of Dermatology, The First Affiliated Hospital, Chongqing Medical University, Chongqing, China.
He Y; Department of Dermatology, The Affiliated Hospital, Southwest Medical University, Luzhou, China.
Chen A; Department of Dermatology, The First Affiliated Hospital, Chongqing Medical University, Chongqing, China.
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Źródło:
International journal of dermatology [Int J Dermatol] 2023 Jan; Vol. 62 (1), pp. 79-87. Date of Electronic Publication: 2022 Nov 28.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Ferroptosis*/genetics
Humans ; Computational Biology/methods ; Gene Expression Profiling/methods ; Gene Ontology
Czasopismo naukowe
Szczegóły
Tytuł:
Learning in Transcriptional Network Models: Computational Discovery of Pathway-Level Memory and Effective Interventions.
Autorzy:
Biswas S; Allen Discovery Center, Tufts University, Medford, MA 02155, USA.; Department of Computer Science & Engineering and Information Technology, Meghnad Saha Institute of Technology, Kolkata 700150, India.
Clawson W; Allen Discovery Center, Tufts University, Medford, MA 02155, USA.
Levin M; Allen Discovery Center, Tufts University, Medford, MA 02155, USA.; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Dec 23; Vol. 24 (1). Date of Electronic Publication: 2022 Dec 23.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Learning*
Animals ; Brain/physiology ; Cognition
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A Complex Heterogeneous Network Model of Disease Regulated by Noncoding RNAs: A Case Study of Unstable Angina Pectoris.
Autorzy:
Qi G; School of Pharmacy, Shenyang Pharmaceutical University, Shenyang 110016, China.
Xu Z; School of Pharmacy, Shenyang Pharmaceutical University, Shenyang 110016, China.
Dan H; School of Medical Devices, Shenyang Pharmaceutical University, Shenyang 110016, China.
Jia X; School of Medical Devices, Shenyang Pharmaceutical University, Shenyang 110016, China.
Jiang Q; School of Medical Devices, Shenyang Pharmaceutical University, Shenyang 110016, China.
Zhang A; School of Pharmacy, Shenyang Pharmaceutical University, Shenyang 110016, China.
Li Z; School of Pharmacy, Shenyang Pharmaceutical University, Shenyang 110016, China.
Liu X; School of Life Sciences and Biopharmaceuticals, Shenyang Pharmaceutical University, Shenyang 110016, China.
Ma J; School of Life Sciences and Biopharmaceuticals, Shenyang Pharmaceutical University, Shenyang 110016, China.
Zheng X; School of Medical Devices, Shenyang Pharmaceutical University, Shenyang 110016, China.
Li Z; School of Medical Devices, Shenyang Pharmaceutical University, Shenyang 110016, China.
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Źródło:
Computational intelligence and neuroscience [Comput Intell Neurosci] 2022 Dec 23; Vol. 2022, pp. 5852089. Date of Electronic Publication: 2022 Dec 23 (Print Publication: 2022).
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
MicroRNAs*/genetics
Humans ; Neural Networks, Computer ; Angina, Unstable/genetics ; Computational Biology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The sound of silence: Transgene silencing in mammalian cell engineering.
Autorzy:
Cabrera A; Department of Bioengineering, Rice University, Houston, TX 77005, USA; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Edelstein HI; Center for Synthetic Biology, Northwestern University, Evanston, IL 60208, USA; The Eli and Edythe Broad CIRM Center, Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.
Glykofrydis F; Department of Stem Cell Biology and Regenerative Medicine, University of Southern California, Los Angeles, CA 90033-9080, USA.
Love KS; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Palacios S; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Tycko J; Department of Genetics, Stanford University, Stanford, CA 94305, USA.
Zhang M; Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Champaign, Urbana, IL 61801, USA.
Lensch S; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.
Shields CE; Wallace H. Coulter Department of Biomedical Engineering, Emory University, Atlanta, GA 30322, USA.
Livingston M; Department of Biomedical Engineering, University of Utah, Salt Lake City, UT 84112, USA.
Weiss R; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Synthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Zhao H; Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Champaign, Urbana, IL 61801, USA.
Haynes KA; Wallace H. Coulter Department of Biomedical Engineering, Emory University, Atlanta, GA 30322, USA.
Morsut L; Department of Stem Cell Biology and Regenerative Medicine, University of Southern California, Los Angeles, CA 90033-9080, USA.
Chen YY; Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA 90095, USA; Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Los Angeles, CA 90095, USA; Parker Institute for Cancer Immunotherapy Center at UCLA, Los Angeles, CA 90095, USA.
Khalil AS; Biological Design Center and Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.
Wong WW; Biological Design Center and Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA.
Collins JJ; Department of Stem Cell Biology and Regenerative Medicine, University of Southern California, Los Angeles, CA 90033-9080, USA; Synthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA; Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA, USA; Harvard-MIT Program in Health Sciences and Technology, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Rosser SJ; School of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Polizzi K; Department of Chemical Engineering, Imperial College London, South Kensington Campus, London, UK; Imperial College Centre for Synthetic Biology, South Kensington Campus, London, UK.
Elowitz MB; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA; Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125, USA.
Fussenegger M; Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 26, Basel 4058, Switzerland; Faculty of Science, University of Basel, Mattenstrasse 26, Basel 4058, Switzerland.
Hilton IB; Department of Bioengineering, Rice University, Houston, TX 77005, USA.
Leonard JN; Center for Synthetic Biology, Northwestern University, Evanston, IL 60208, USA; The Eli and Edythe Broad CIRM Center, Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.
Bintu L; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.
Galloway KE; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Deans TL; Department of Biomedical Engineering, University of Utah, Salt Lake City, UT 84112, USA. Electronic address: .
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Źródło:
Cell systems [Cell Syst] 2022 Dec 21; Vol. 13 (12), pp. 950-973.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural
MeSH Terms:
Genetic Engineering*
Gene Regulatory Networks*
Animals ; Transgenes/genetics ; Cell Communication ; Mammals/genetics
Czasopismo naukowe
Szczegóły
Tytuł:
Allelic correlation is a marker of trade-offs between barriers to transmission of expression variability and signal responsiveness in genetic networks.
Autorzy:
Boe RH; Genetics and Epigenetics, Cell and Molecular Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ayyappan V; Department of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA.
Schuh L; Institute of AI for Health, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764 Neuherberg, Germany; Department of Mathematics, Technical University of Munich, Garching 85748, Germany.
Raj A; Department of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. Electronic address: .
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Źródło:
Cell systems [Cell Syst] 2022 Dec 21; Vol. 13 (12), pp. 1016-1032.e6. Date of Electronic Publication: 2022 Nov 29.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Gene Regulatory Networks*/genetics
Signal Transduction*/genetics
Animals ; Alleles ; Mammals
Czasopismo naukowe
Szczegóły
Wyświetlanie 1-20 z 40687

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