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Tytuł:
Association analysis of agronomic traits and construction of genetic networks by resequencing of 306 sugar beet (Beta vulgaris L.) lines.
Autorzy:
Wang L; Key Laboratory of Herbage and Endemic Crop Biology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot, China.; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Zhang Z; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Han P; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Liang Y; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Zhang H; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Fu Z; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Zhao S; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
E Y; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Zhang H; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Wu X; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Zhang B; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Chang Y; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Tang K; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Zheng W; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China.
Chen L; College of Modern Agriculture and Ecological Environment, Heilongjiang University, Heilongjiang, China.
Wang R; Beet Breeding and Seed Processing Laboratory, Institute for Sugar Beet Research, Shihezi Academy of Agricultural Sciences, Shihezi, China.
Gao W; Research Industrial of Economic Crops, Xinjiang Academy of Agricultural Sciences, Urumuqi, China.
Hasi A; Key Laboratory of Herbage and Endemic Crop Biology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot, China. .
Li X; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China. .
Bai C; Key Laboratory of Sugar Beet Genetics and Germplasm Enhancement, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China. .
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Źródło:
Scientific reports [Sci Rep] 2023 Sep 18; Vol. 13 (1), pp. 15422. Date of Electronic Publication: 2023 Sep 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*
Beta vulgaris*/genetics
Plant Breeding ; Sequence Analysis, DNA ; Vegetables ; Sugars
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Inferring gene regulatory network from single-cell transcriptomes with graph autoencoder model.
Autorzy:
Wang J; Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.; Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou, Zhejiang, China.
Chen Y; Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.
Zou Q; Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.; Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou, Zhejiang, China.
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Źródło:
PLoS genetics [PLoS Genet] 2023 Sep 13; Vol. 19 (9), pp. e1010942. Date of Electronic Publication: 2023 Sep 13 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*/genetics
Triple Negative Breast Neoplasms*
Humans ; Leukocytes, Mononuclear ; Transcriptome/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Spatial biology of Ising-like synthetic genetic networks.
Autorzy:
Simpson K; ANID - Millennium Science Initiative Program, Millennium Institute for Integrative Biology (iBio), Santiago, Chile.
L'Homme A; Institute for Biological and Medical Engineering, Schools of Engineering, Medicine and Biological Sciences, Pontificia Universidad Católica de Chile, Santiago, Chile.
Keymer J; Institute for Advanced Studies, Shenzhen X-Institute, Shenzhen, China. .; Schools of Physics and Biology, Pontificia Universidad Católica de Chile, Santiago, Chile. .; Department of Natural Sciences and Technology, Universidad de Aysén, Coyhaique, Chile. .
Federici F; ANID - Millennium Science Initiative Program, Millennium Institute for Integrative Biology (iBio), Santiago, Chile. .; Institute for Biological and Medical Engineering, Schools of Engineering, Medicine and Biological Sciences, Pontificia Universidad Católica de Chile, Santiago, Chile. .; FONDAP Center for Genome Regulation - Department of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chile, Santiago, Chile. .
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Źródło:
BMC biology [BMC Biol] 2023 Sep 04; Vol. 21 (1), pp. 185. Date of Electronic Publication: 2023 Sep 04.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*
Escherichia coli*/genetics
Cell Shape ; Computer Simulation ; Synthetic Biology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL family.
Autorzy:
Dennler O; Univ Rennes, Inria, CNRS, IRISA, UMR 6074, Rennes, France.; Univ Rennes, Inserm, EHESP, Irset, UMR S1085, Rennes, France.
Coste F; Univ Rennes, Inria, CNRS, IRISA, UMR 6074, Rennes, France.
Blanquart S; Univ Rennes, Inria, CNRS, IRISA, UMR 6074, Rennes, France.
Belleannée C; Univ Rennes, Inria, CNRS, IRISA, UMR 6074, Rennes, France.
Théret N; Univ Rennes, Inria, CNRS, IRISA, UMR 6074, Rennes, France.; Univ Rennes, Inserm, EHESP, Irset, UMR S1085, Rennes, France.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Aug 31; Vol. 19 (8), pp. e1011404. Date of Electronic Publication: 2023 Aug 31 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*
Humans ; Phylogeny ; Conserved Sequence ; Phenotype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Inferring gene regulatory networks using transcriptional profiles as dynamical attractors.
Autorzy:
Li R; Quantitative and Systems Biology Graduate Program, University of California, Merced, Merced, California, United States of America.
Rozum JC; Department of Systems Science and Industrial Engineering, Binghamton University (State University of New York), Binghamton, New York, United States of America.
Quail MM; Quantitative and Systems Biology Graduate Program, University of California, Merced, Merced, California, United States of America.
Qasim MN; Quantitative and Systems Biology Graduate Program, University of California, Merced, Merced, California, United States of America.
Sindi SS; Department of Applied Mathematics, University of California, Merced, Merced, California, United States of America.
Nobile CJ; Department of Molecular Cell Biology, University of California, Merced, Merced, California, United States of America.; Health Sciences Research Institute, University of California, Merced, Merced, California, United States of America.
Albert R; Department of Physics, Pennsylvania State University, University Park, University Park, Pennsylvania, United States of America.; Department of Biology, Pennsylvania State University, University Park, University Park, Pennsylvania, United States of America.
Hernday AD; Department of Molecular Cell Biology, University of California, Merced, Merced, California, United States of America.; Health Sciences Research Institute, University of California, Merced, Merced, California, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Aug 22; Vol. 19 (8), pp. e1010991. Date of Electronic Publication: 2023 Aug 22 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Gene Regulatory Networks*/genetics
Algorithms*
Bayes Theorem ; Biological Evolution ; Candida albicans/genetics ; RNA, Messenger
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Nonlinear expression patterns and multiple shifts in gene network interactions underlie robust phenotypic change in Drosophila melanogaster selected for night sleep duration.
Autorzy:
Souto-Maior C; Laboratory of Systems Genetics, Systems Biology Center, National Heart Lung and Blood Institute, Bethesda, Maryland, United States of America.
Serrano Negron YL; Laboratory of Systems Genetics, Systems Biology Center, National Heart Lung and Blood Institute, Bethesda, Maryland, United States of America.
Harbison ST; Laboratory of Systems Genetics, Systems Biology Center, National Heart Lung and Blood Institute, Bethesda, Maryland, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Aug 10; Vol. 19 (8), pp. e1011389. Date of Electronic Publication: 2023 Aug 10 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms:
Drosophila melanogaster*/genetics
Gene Regulatory Networks*/genetics
Animals ; Sleep Duration ; Gene Expression Regulation/genetics ; Phenotype ; Sleep/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Essential genes Ptgs2, Tlr4, and Ccr2 regulate neuro-inflammation during the acute phase of cerebral ischemic in mice.
Autorzy:
Jiang H; Department of Neurosurgery, Renmin Hospital of Wuhan University, 238 Jiefang Road, Wuchang Distict, Wuhan, 430060, Hubei Province, China.; Central Laboratory, Renmin Hospital of Wuhan University, Wuhan, 430060, Hubei Province, China.
Sun Z; Department of Neurosurgery, Renmin Hospital of Wuhan University, 238 Jiefang Road, Wuchang Distict, Wuhan, 430060, Hubei Province, China.; Central Laboratory, Renmin Hospital of Wuhan University, Wuhan, 430060, Hubei Province, China.
Zhu X; Central Laboratory, Renmin Hospital of Wuhan University, Wuhan, 430060, Hubei Province, China.
Li F; Department of Neurosurgery, Renmin Hospital of Wuhan University, 238 Jiefang Road, Wuchang Distict, Wuhan, 430060, Hubei Province, China. .
Chen Q; Department of Neurosurgery, Renmin Hospital of Wuhan University, 238 Jiefang Road, Wuchang Distict, Wuhan, 430060, Hubei Province, China. .
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Źródło:
Scientific reports [Sci Rep] 2023 Aug 10; Vol. 13 (1), pp. 13021. Date of Electronic Publication: 2023 Aug 10.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*
MicroRNAs*/genetics
Animals ; Mice ; Computational Biology/methods ; Cyclooxygenase 2/genetics ; Gene Expression Profiling/methods ; Gene Expression Regulation, Neoplastic ; Genes, Essential ; Infarction, Middle Cerebral Artery/genetics ; Neuroinflammatory Diseases ; Receptors, CCR2/genetics ; Receptors, Chemokine/genetics ; Toll-Like Receptor 4/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
From time-series transcriptomics to gene regulatory networks: A review on inference methods.
Autorzy:
Marku M; CRCT, Université de Toulouse, Inserm, CNRS, Université Toulouse III-Paul Sabatier, Centre de Recherches en Cancérologie de Toulouse, Toulouse, France.
Pancaldi V; CRCT, Université de Toulouse, Inserm, CNRS, Université Toulouse III-Paul Sabatier, Centre de Recherches en Cancérologie de Toulouse, Toulouse, France.; Barcelona Supercomputing Center, Barcelona, Spain.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Aug 10; Vol. 19 (8), pp. e1011254. Date of Electronic Publication: 2023 Aug 10 (Print Publication: 2023).
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*/genetics
Transcriptome*/genetics
Gene Expression Profiling ; Algorithms ; Computational Biology/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Ensemble inference of unobserved infections in networks using partial observations.
Autorzy:
Zhang R; School of Mathematical Sciences, Dalian University of Technology, Dalian, China.
Tai J; School of Mathematical Sciences, Dalian University of Technology, Dalian, China.
Pei S; Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Aug 07; Vol. 19 (8), pp. e1011355. Date of Electronic Publication: 2023 Aug 07 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, P.H.S.
MeSH Terms:
Algorithms*
Gene Regulatory Networks*
Humans ; Bayes Theorem
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
CastNet: a systems-level sequence evolution simulator.
Autorzy:
Rivera-Rivera CJ; University of Bristol, Life Sciences Building, 24 Tyndall Avenue, Bristol, BS8 1TG, UK. .
Grbic D; IT-University of Copenhagen, Rued Langgaards Vej 7, 2300, Copenhagen, Denmark.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Jun 12; Vol. 24 (1), pp. 247. Date of Electronic Publication: 2023 Jun 12.
Typ publikacji:
Journal Article
MeSH Terms:
Evolution, Molecular*
Gene Regulatory Networks*
Computer Simulation ; Genomics ; Internet
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
GRaNIE and GRaNPA: inference and evaluation of enhancer-mediated gene regulatory networks.
Autorzy:
Kamal A; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.; Faculty of Biosciences, Collaboration for Joint PhD Degree between EMBL and Heidelberg University, Heidelberg, Germany.
Arnold C; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Claringbould A; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Moussa R; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Servaas NH; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Kholmatov M; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Daga N; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Nogina D; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Mueller-Dott S; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Reyes-Palomares A; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Palla G; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Sigalova O; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.; Faculty of Biosciences, Collaboration for Joint PhD Degree between EMBL and Heidelberg University, Heidelberg, Germany.
Bunina D; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Pabst C; Department of Medicine V, Hematology, Oncology and Rheumatology, University Hospital Heidelberg, Heidelberg, Germany.; Molecular Medicine Partnership Unit, University of Heidelberg, Heidelberg, Germany.
Zaugg JB; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.; Molecular Medicine Partnership Unit, University of Heidelberg, Heidelberg, Germany.
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Źródło:
Molecular systems biology [Mol Syst Biol] 2023 Jun 12; Vol. 19 (6), pp. e11627. Date of Electronic Publication: 2023 Apr 19.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*
Neoplasms*/genetics
Humans ; Gene Expression Regulation ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Chromatin ; Enhancer Elements, Genetic/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A systems biology approach to pathogenesis of gastric cancer: gene network modeling and pathway analysis.
Autorzy:
Mottaghi-Dastjerdi N; Department of Pharmacognosy and Pharmaceutical Biotechnology, School of Pharmacy, Iran University of Medical Sciences, Tehran, Iran. .
Ghorbani A; Nuclear Agriculture Research School, Nuclear Science and Technology Research Institute (NSTRI), Karaj, Iran. .
Montazeri H; Department of Pharmacognosy and Pharmaceutical Biotechnology, School of Pharmacy, Iran University of Medical Sciences, Tehran, Iran.
Guzzi PH; Department of Surgical and Medical Sciences, University 'Magna Græcia' of Catanzaro, Catanzaro, Italy.
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Źródło:
BMC gastroenterology [BMC Gastroenterol] 2023 Jul 24; Vol. 23 (1), pp. 248. Date of Electronic Publication: 2023 Jul 24.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Stomach Neoplasms*/pathology
Humans ; Systems Biology ; Gene Expression Profiling/methods ; Protein Interaction Maps/genetics ; Gene Expression Regulation, Neoplastic
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Development and validation of asthma risk prediction models using co-expression gene modules and machine learning methods.
Autorzy:
Dessie EY; Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Gautam Y; Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Ding L; Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Altaye M; Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Beyene J; Department of Health Research Methods, Evidence, and Impact, McMaster University, Hamilton, Canada.
Mersha TB; Department of Pediatrics, Cincinnati Children's Hospital Medical Center, University of Cincinnati College of Medicine, Cincinnati, OH, USA. .
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Źródło:
Scientific reports [Sci Rep] 2023 Jul 12; Vol. 13 (1), pp. 11279. Date of Electronic Publication: 2023 Jul 12.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Gene Regulatory Networks*
Asthma*/genetics
Humans ; Phosphatidylinositol 3-Kinases ; Nose ; Machine Learning
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
GeCoNet-Tool: a software package for gene co-expression network construction and analysis.
Autorzy:
Kuang J; Department of Electrical and Computer Engineering, Kansas State University, Manhattan, KS, 66506, USA. .
Michel K; Division of Biology, Kansas State University, Manhattan, KS, 66506, USA.
Scoglio C; Department of Electrical and Computer Engineering, Kansas State University, Manhattan, KS, 66506, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Jul 11; Vol. 24 (1), pp. 281. Date of Electronic Publication: 2023 Jul 11.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Software*
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Assessing biological network dynamics: comparing numerical simulations with analytical decomposition of parameter space.
Autorzy:
Hari K; Centre for BioSystems Science and Engineering, Indian Institute of Science, Bangalore, 560012, India.
Duncan W; Department of Mathematical Sciences, Montana State University, Bozeman, MT, 59717, USA.
Ibrahim MA; Department of Chemical Engineering, Indian Institute of Technology Hyderabad, Hyderabad, 502285, India.
Jolly MK; Centre for BioSystems Science and Engineering, Indian Institute of Science, Bangalore, 560012, India. .
Cummins B; Department of Mathematical Sciences, Montana State University, Bozeman, MT, 59717, USA. .
Gedeon T; Department of Mathematical Sciences, Montana State University, Bozeman, MT, 59717, USA. .
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Źródło:
NPJ systems biology and applications [NPJ Syst Biol Appl] 2023 Jul 03; Vol. 9 (1), pp. 29. Date of Electronic Publication: 2023 Jul 03.
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*/genetics
Models, Theoretical*
Computer Simulation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Gene regulatory network inference based on a nonhomogeneous dynamic Bayesian network model with an improved Markov Monte Carlo sampling.
Autorzy:
Zhang J; College of Artificial Intelligence and Big Data, Hefei University, Hefei, 230031, China.
Hu C; College of Artificial Intelligence and Big Data, Hefei University, Hefei, 230031, China. .
Zhang Q; College of Artificial Intelligence and Big Data, Hefei University, Hefei, 230031, China.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Jun 24; Vol. 24 (1), pp. 264. Date of Electronic Publication: 2023 Jun 24.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Algorithms*
Bayes Theorem ; Markov Chains ; Saccharomyces cerevisiae/genetics ; Monte Carlo Method
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Serotonin transporter (5-HTT) gene network moderates the impact of prenatal maternal adversity on orbitofrontal cortical thickness in middle childhood.
Autorzy:
Sunderji A; Department of Psychology, Neuroscience & Behaviour, McMaster University, Hamilton, ON, Canada.
Gallant HD; Department of Psychology, Neuroscience & Behaviour, McMaster University, Hamilton, ON, Canada.
Hall A; Department of Psychology, Neuroscience & Behaviour, McMaster University, Hamilton, ON, Canada.
Davis AD; Department of Psychology, Neuroscience & Behaviour, McMaster University, Hamilton, ON, Canada.
Pokhvisneva I; Department of Psychiatry, Faculty of Medicine and Health Sciences, McGill University, Montreal, QC, Canada.; Ludmer Centre for Neuroinformatics and Mental Health, Douglas Mental Health University Institute, McGill University, Montreal, QC, Canada.
Meaney MJ; Department of Psychiatry, Faculty of Medicine and Health Sciences, McGill University, Montreal, QC, Canada.; Ludmer Centre for Neuroinformatics and Mental Health, Douglas Mental Health University Institute, McGill University, Montreal, QC, Canada.; Translational Neuroscience Program, Singapore Institute for Clinical Sciences and Brain-Body Initiative, Agency for Science, Technology and Research (A*STAR), Singapore Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.
Silveira PP; Department of Psychiatry, Faculty of Medicine and Health Sciences, McGill University, Montreal, QC, Canada.; Ludmer Centre for Neuroinformatics and Mental Health, Douglas Mental Health University Institute, McGill University, Montreal, QC, Canada.
Sassi RB; Department of Psychiatry, University of British Columbia, Vancouver, BC, Canada.
Hall GB; Department of Psychology, Neuroscience & Behaviour, McMaster University, Hamilton, ON, Canada.
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Źródło:
PloS one [PLoS One] 2023 Jun 15; Vol. 18 (6), pp. e0287289. Date of Electronic Publication: 2023 Jun 15 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Serotonin Plasma Membrane Transport Proteins*/genetics
Gene Regulatory Networks*
Female ; Pregnancy ; Humans ; Child ; Child, Preschool ; Prefrontal Cortex/diagnostic imaging ; Family
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transposons contribute to the acquisition of cell type-specific cis-elements in the brain.
Autorzy:
Sekine K; Graduate School of Advanced Science and Engineering, Waseda University, Tokyo, Japan.; Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan.
Onoguchi M; Graduate School of Advanced Science and Engineering, Waseda University, Tokyo, Japan. .; Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan. .
Hamada M; Graduate School of Advanced Science and Engineering, Waseda University, Tokyo, Japan. .; Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan. .; Graduate School of Medicine, Nippon Medical School, Tokyo, Japan. .
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Źródło:
Communications biology [Commun Biol] 2023 Jun 10; Vol. 6 (1), pp. 631. Date of Electronic Publication: 2023 Jun 10.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*
DNA Transposable Elements*/genetics
Humans ; Animals ; Vertebrates/genetics ; Protein Binding ; Mammals/genetics ; Brain
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Soybean gene co-expression network analysis identifies two co-regulated gene modules associated with nodule formation and development.
Autorzy:
Piya S; Department of Plant Sciences, University of Tennessee, Knoxville, Tennessee, 37996, USA.
Pantalone V; Department of Plant Sciences, University of Tennessee, Knoxville, Tennessee, 37996, USA.
Zadegan SB; Department of Plant Sciences, University of Tennessee, Knoxville, Tennessee, 37996, USA.
Shipp S; Department of Plant Sciences, University of Tennessee, Knoxville, Tennessee, 37996, USA.
Lakhssassi N; Department of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, Illinois, 62901, USA.
Knizia D; Department of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, Illinois, 62901, USA.
Krishnan HB; Plant Science Division, University of Missouri, Columbia, Missouri, USA.; Plant Genetics Research, USDA Agricultural Research Service, Columbia, Missouri, USA.
Meksem K; Department of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, Illinois, 62901, USA.
Hewezi T; Department of Plant Sciences, University of Tennessee, Knoxville, Tennessee, 37996, USA.
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Źródło:
Molecular plant pathology [Mol Plant Pathol] 2023 Jun; Vol. 24 (6), pp. 628-636. Date of Electronic Publication: 2023 Mar 28.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Glycine max*/genetics
Gene Regulatory Networks*
Gene Expression Regulation, Plant/genetics ; Gene Expression Profiling ; Transcription Factors/genetics
Czasopismo naukowe
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Tytuł:
Adhesion and biofilm formation by the opportunistic pathogen Candida tropicalis : what do we know?
Autorzy:
de Souza CM; Department of Microbiology, Paraná State University of Londrina, Paraná, Brazil. C.P. 6001, 86051990.
Dos Santos MM; Department of Microbiology, Paraná State University of Londrina, Paraná, Brazil. C.P. 6001, 86051990.
Furlaneto-Maia L; Technological Federal University of Paraná, Paraná, Brazil.
Furlaneto MC; Department of Microbiology, Paraná State University of Londrina, Paraná, Brazil. C.P. 6001, 86051990.
Pokaż więcej
Źródło:
Canadian journal of microbiology [Can J Microbiol] 2023 Jun 01; Vol. 69 (6), pp. 207-218. Date of Electronic Publication: 2023 Feb 21.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Candida tropicalis*/genetics
Gene Regulatory Networks*
Biofilms ; Quorum Sensing ; Phenotype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Wyświetlanie 21-40 z 33868

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