Temat: "Gene Regulatory Networks" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Automatic design of gene regulatory mechanisms for spatial pattern formation.
Autorzy:: Mousavi R; Department of Biological Sciences, University of Maryland, Baltimore County, Baltimore, MD, USA.
Lobo D; Department of Biological Sciences, University of Maryland, Baltimore County, Baltimore, MD, USA. .; Greenebaum Comprehensive Cancer Center and Center for Stem Cell Biology & Regenerative Medicine, University of Maryland, Baltimore, Baltimore, MD, USA. .; Pokaż więcej
Źródło:: NPJ systems biology and applications [NPJ Syst Biol Appl] 2024 Apr 02; Vol. 10 (1), pp. 35. Date of Electronic Publication: 2024 Apr 02.
Typ publikacji:: Journal Article
MeSH Terms:: Gene Expression Regulation*
Gene Regulatory Networks*/genetics

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Skocz do pozycji: 2.

Tytuł:: Analysis of the Gene Networks and Pathways Correlated with Tissue Differentiation in Prostate Cancer.
Autorzy:: Filippi A; Department of Biochemistry and Biophysics, 'Carol Davila' University of Medicine and Pharmacy, 020021 Bucharest, Romania.
Aurelian J; Department of Specific Disciplines, 'Carol Davila' University of Medicine and Pharmacy, 020021 Bucharest, Romania.; Department of Urology, 'Prof. Dr. Th. Burghele' Clinical Hospital, 050653 Bucharest, Romania.
Mocanu MM; Department of Biochemistry and Biophysics, 'Carol Davila' University of Medicine and Pharmacy, 020021 Bucharest, Romania.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2024 Mar 24; Vol. 25 (7). Date of Electronic Publication: 2024 Mar 24.
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*
Prostatic Neoplasms*/genetics
Male ; Humans ; Cell Cycle ; Cell Division ; Adenoviridae

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Skocz do pozycji: 3.

Tytuł:: A neural network-based model framework for cell-fate decisions and development.
Autorzy:: Paczkó M; Institute of Evolution, HUN-REN Centre for Ecological Research, Konkoly-Thege M. út 29-33, 1121, Budapest, Hungary.; Doctoral School of Biology, Institute of Biology, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/C, 1117, Budapest, Hungary.
Vörös D; Institute of Evolution, HUN-REN Centre for Ecological Research, Konkoly-Thege M. út 29-33, 1121, Budapest, Hungary.; Doctoral School of Biology, Institute of Biology, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/C, 1117, Budapest, Hungary.
Szabó P; Institute of Evolution, HUN-REN Centre for Ecological Research, Konkoly-Thege M. út 29-33, 1121, Budapest, Hungary.
Jékely G; Living Systems Institute, University of Exeter, Stocker Road 4QD, EX4, Exeter, UK.
Szathmáry E; Institute of Evolution, HUN-REN Centre for Ecological Research, Konkoly-Thege M. út 29-33, 1121, Budapest, Hungary. .; Center for the Conceptual Foundations of Science, Parmenides Foundation, Hindenburgstr. 15, 82343, Pöcking, Germany. .; Department of Plant Systematics, Ecology and Theoretical Biology, Eötvös Loránd University, Pázmány Péter sétány 1/C, 1117, Budapest, Hungary. .
Szilágyi A; Institute of Evolution, HUN-REN Centre for Ecological Research, Konkoly-Thege M. út 29-33, 1121, Budapest, Hungary.; Pokaż więcej
Źródło:: Communications biology [Commun Biol] 2024 Mar 14; Vol. 7 (1), pp. 323. Date of Electronic Publication: 2024 Mar 14.
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*
Neural Networks, Computer*
Cell Differentiation/genetics

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Skocz do pozycji: 4.

Tytuł:: Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade-off between secondary and primary metabolism.
Autorzy:: Qiu S; Department of Engineering Science, University of Oxford, Oxford, UK.; School of Food and Health, Beijing Technology and Business University, Beijing, China.
Huang Y; School of Computer Science and Engineering, Beihang University, Beijing, China.
Liang S; Department of Life Science, Imperial College London, London, UK.
Zeng H; School of Food and Health, Beijing Technology and Business University, Beijing, China.
Yang A; Department of Engineering Science, University of Oxford, Oxford, UK.; Pokaż więcej
Źródło:: Microbial biotechnology [Microb Biotechnol] 2024 Feb; Vol. 17 (2), pp. e14425.
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*
Probiotics*
Databases, Factual ; Transcription Factors ; Transcriptome

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Skocz do pozycji: 5.

Tytuł:: Epigenetic OCT4 regulatory network: stochastic analysis of cellular reprogramming.
Autorzy:: Bruno S; Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA.
Schlaeger TM; Boston Children's Hospital Stem Cell Program, Boston Children's Hospital, 300 Longwood Avenue, Boston, MA, 02115, USA.
Del Vecchio D; Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA. .; Pokaż więcej
Źródło:: NPJ systems biology and applications [NPJ Syst Biol Appl] 2024 Jan 06; Vol. 10 (1), pp. 3. Date of Electronic Publication: 2024 Jan 06.
Typ publikacji:: Journal Article
MeSH Terms:: Cellular Reprogramming*/genetics
Gene Regulatory Networks*/genetics
Cell Differentiation/genetics ; Chromatin ; Epigenesis, Genetic/genetics

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Skocz do pozycji: 6.

Tytuł:: Expanding the genetic programmability of Lactiplantibacillus plantarum.
Autorzy:: Blanch-Asensio M; Bioprogrammable Materials, INM-Leibniz Institute for New Materials, Saarbrücken, Germany.
Dey S; Bioprogrammable Materials, INM-Leibniz Institute for New Materials, Saarbrücken, Germany.
Tadimarri VS; Bioprogrammable Materials, INM-Leibniz Institute for New Materials, Saarbrücken, Germany.
Sankaran S; Bioprogrammable Materials, INM-Leibniz Institute for New Materials, Saarbrücken, Germany.; Pokaż więcej
Źródło:: Microbial biotechnology [Microb Biotechnol] 2024 Jan; Vol. 17 (1), pp. e14335. Date of Electronic Publication: 2023 Aug 28.
Typ publikacji:: Journal Article; Review
MeSH Terms:: Food*
Gene Regulatory Networks*
Animals ; Humans ; Synthetic Biology ; Lactobacillaceae

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Skocz do pozycji: 7.

Tytuł:: RENGE infers gene regulatory networks using time-series single-cell RNA-seq data with CRISPR perturbations.
Autorzy:: Ishikawa M; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan. .
Sugino S; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.
Masuda Y; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.
Tarumoto Y; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.
Seto Y; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.
Taniyama N; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.
Wagai F; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.
Yamauchi Y; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.
Kojima Y; Laboratory of Computational Life Science, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.
Kiryu H; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, 277-8561, Japan.
Yusa K; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.
Eiraku M; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.; Institute for the Advanced Study of Human Biology (WPI-ASHBi), Kyoto University, Kyoto, 606-8507, Japan.
Mochizuki A; Institute for Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan.; Pokaż więcej
Źródło:: Communications biology [Commun Biol] 2023 Dec 28; Vol. 6 (1), pp. 1290. Date of Electronic Publication: 2023 Dec 28.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Gene Regulatory Networks*
Single-Cell Gene Expression Analysis*
Humans ; Gene Knockout Techniques ; Time Factors

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Skocz do pozycji: 8.

Tytuł:: Cis-Regulatory Elements in Mammals.
Autorzy:: Liu X; State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Chen M; State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Qu X; State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Liu W; State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Dou Y; State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Liu Q; State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Shi D; State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Jiang M; State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, Nanning 530005, China.
Li H; State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, Nanning 530005, China.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2023 Dec 26; Vol. 25 (1). Date of Electronic Publication: 2023 Dec 26.
Typ publikacji:: Journal Article; Review
MeSH Terms:: Gene Regulatory Networks*
Mammals*/genetics
Animals ; Prospective Studies ; Promoter Regions, Genetic

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Skocz do pozycji: 9.

Tytuł:: Bioinformatics analysis of hub genes as osteoarthritis prognostic biomarkers.
Autorzy:: Zeng J; Department of Orthopedics, The First Affiliated Hospital, Jiangxi Medical College, Nanchang University, No. 17, Yongwaizheng Street, Donghu District, Nanchang City, Jiangxi Province, 330000, People's Republic of China.
Jiang X; Department of Orthopedics, Yugan County Hospital, No. 1, Mianshan Avenue, Yugan County, Shangrao City, Jiangxi Province, 335100, People's Republic of China.
Jiang M; Department of Orthopedics 10th, The Affiliated Hospital of Jiangxi University of Traditional Chinese Medicine, No. 445, Bayi Avenue, Donghu District, Nanchang City, Jiangxi Province, 330000, People's Republic of China.
Cao Y; Department of Orthopedics, The First Affiliated Hospital, Jiangxi Medical College, Nanchang University, No. 17, Yongwaizheng Street, Donghu District, Nanchang City, Jiangxi Province, 330000, People's Republic of China.
Jiang Y; Department of Orthopedics, The First Affiliated Hospital, Jiangxi Medical College, Nanchang University, No. 17, Yongwaizheng Street, Donghu District, Nanchang City, Jiangxi Province, 330000, People's Republic of China. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2023 Dec 21; Vol. 13 (1), pp. 22894. Date of Electronic Publication: 2023 Dec 21.
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*
Osteoarthritis, Knee*
Humans ; Aged ; Animals ; Rats ; Prognosis ; HLA-DR alpha-Chains ; Computational Biology ; Biomarkers ; Gene Expression Profiling

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Skocz do pozycji: 10.

Tytuł:: Enhancer Recognition: A Transformer Encoder-Based Method with WGAN-GP for Data Augmentation.
Autorzy:: Feng T; College of Information Science & Engineering, Lanzhou University, Lanzhou 730000, China.
Hu T; College of Information Science & Engineering, Lanzhou University, Lanzhou 730000, China.
Liu W; College of Ecology, Lanzhou University, Lanzhou 730000, China.
Zhang Y; Supercomputer Center, Lanzhou University, Lanzhou 730000, China.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2023 Dec 16; Vol. 24 (24). Date of Electronic Publication: 2023 Dec 16.
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*
Labor, Obstetric*
Pregnancy ; Female ; Humans ; Data Accuracy ; Electric Power Supplies ; Recognition, Psychology

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Skocz do pozycji: 11.

Tytuł:: Systematic single cell RNA sequencing analysis reveals unique transcriptional regulatory networks of Atoh1-mediated hair cell conversion in adult mouse cochleae.
Autorzy:: Tu S; Department of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States of America.
Zuo J; Department of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2023 Dec 11; Vol. 18 (12), pp. e0284685. Date of Electronic Publication: 2023 Dec 11 (Print Publication: 2023).
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*
Basic Helix-Loop-Helix Transcription Factors*/genetics
Basic Helix-Loop-Helix Transcription Factors*/metabolism
Animals ; Mice ; Animals, Newborn ; Hair Cells, Auditory/metabolism ; Cochlea/metabolism ; Sequence Analysis, RNA ; Mammals/genetics

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Skocz do pozycji: 12.

Tytuł:: Transcriptomics reveals a core transcriptional network of K-type cytoplasmic male sterility microspore abortion in wheat (Triticum aestivum L.).
Autorzy:: Wu B; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China.
Xia Y; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China.; School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China.
Zhang G; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China.
Wang Y; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China.
Wang J; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China.
Ma S; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China.
Song Y; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China.
Yang Z; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China.
Ma L; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China. .
Niu N; College of Agronomy, Northwest A & F University, Key Laboratory of Crop Heterosis of Shaanxi Province, Wheat Breeding Engineering Research Center, Ministry of Education, Yangling, 712100, Shaanxi, China. .; Pokaż więcej
Źródło:: BMC plant biology [BMC Plant Biol] 2023 Dec 06; Vol. 23 (1), pp. 618. Date of Electronic Publication: 2023 Dec 06.
Typ publikacji:: Journal Article
MeSH Terms:: Triticum*/metabolism
Gene Regulatory Networks*
Plant Infertility/genetics ; Plant Growth Regulators/metabolism ; Seeds ; Gene Expression Profiling ; Transcriptome ; Cytoplasm/genetics ; Hormones/metabolism ; Gene Expression Regulation, Plant

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Skocz do pozycji: 13.

Tytuł:: Learning massive interpretable gene regulatory networks of the human brain by merging Bayesian networks.
Autorzy:: Bernaola N; Computational Intelligence Group, Departamento de Inteligencia Artificial, Universidad Politécnica de Madrid, Madrid, Spain.
Michiels M; Centro Integral de Neurociencias Abarca Campal, Hospital Universitario HM Puerta del Sur, Madrid, Spain.
Larrañaga P; Computational Intelligence Group, Departamento de Inteligencia Artificial, Universidad Politécnica de Madrid, Madrid, Spain.
Bielza C; Computational Intelligence Group, Departamento de Inteligencia Artificial, Universidad Politécnica de Madrid, Madrid, Spain.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2023 Dec 01; Vol. 19 (12), pp. e1011443. Date of Electronic Publication: 2023 Dec 01 (Print Publication: 2023).
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*/genetics
Artificial Intelligence*
Humans ; Bayes Theorem ; Computational Biology/methods ; Algorithms ; Brain

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Skocz do pozycji: 14.

Tytuł:: Only a topological method can identify all possible network structures capable of Robust Perfect Adaptation.
Autorzy:: Araujo RP; School of Mathematical Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.
Liotta LA; Center for Applied Proteomics and Molecular Medicine, George Mason University, Manassas, Virginia, United States of America.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2023 Nov 22; Vol. 19 (11), pp. e1011638. Date of Electronic Publication: 2023 Nov 22 (Print Publication: 2023).
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*
Models, Biological*

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Skocz do pozycji: 15.

Tytuł:: Gene communities in co-expression networks across different tissues.
Autorzy:: Russell M; Department of Mathematics, State University of New York at Buffalo, Buffalo, New York, United States of America.
Aqil A; Department of Biological Sciences, State University of New York at Buffalo, Buffalo, New York, United States of America.
Saitou M; Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway.
Gokcumen O; Department of Biological Sciences, State University of New York at Buffalo, Buffalo, New York, United States of America.
Masuda N; Department of Mathematics, State University of New York at Buffalo, Buffalo, New York, United States of America.; Institute for Artificial Intelligence and Data Science, State University of New York at Buffalo, Buffalo, New York, United States of America.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2023 Nov 17; Vol. 19 (11), pp. e1011616. Date of Electronic Publication: 2023 Nov 17 (Print Publication: 2023).
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*/genetics
Quantitative Trait Loci*/genetics
Humans ; Pancreatic Elastase

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Skocz do pozycji: 16.

Tytuł:: scapGNN: A graph neural network-based framework for active pathway and gene module inference from single-cell multi-omics data.
Autorzy:: Han X; State Key Laboratory of Reproductive Medicine and Offspring Health, School of Medicine, Southeast University, Nanjing, China.; Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China.
Wang B; State Key Laboratory of Reproductive Medicine and Offspring Health, School of Medicine, Southeast University, Nanjing, China.; Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China.
Situ C; Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China.
Qi Y; Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China.
Zhu H; Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China.
Li Y; Department of Clinical Laboratory, Sir Run Run Hospital, Nanjing Medical University, Nanjing, China.
Guo X; State Key Laboratory of Reproductive Medicine and Offspring Health, School of Medicine, Southeast University, Nanjing, China.; Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China.; Pokaż więcej
Źródło:: PLoS biology [PLoS Biol] 2023 Nov 13; Vol. 21 (11), pp. e3002369. Date of Electronic Publication: 2023 Nov 13 (Print Publication: 2023).
Typ publikacji:: Journal Article
MeSH Terms:: Gene Regulatory Networks*
Multiomics*
Computational Biology/methods ; Neural Networks, Computer

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Skocz do pozycji: 17.

Tytuł:: Dimensionality reduction methods for extracting functional networks from large-scale CRISPR screens.
Autorzy:: Hassan AZ; Department of Computer Science and Engineering, University of Minnesota - Twin Cities, Minneapolis, MN, USA.
Ward HN; Bioinformatics and Computational Biology Graduate Program, University of Minnesota - Twin Cities, Minneapolis, MN, USA.
Rahman M; Department of Computer Science and Engineering, University of Minnesota - Twin Cities, Minneapolis, MN, USA.
Billmann M; Department of Computer Science and Engineering, University of Minnesota - Twin Cities, Minneapolis, MN, USA.; Institute of Human Genetics, University of Bonn, School of Medicine and University Hospital Bonn, Bonn, Germany.
Lee Y; Bioinformatics and Computational Biology Graduate Program, University of Minnesota - Twin Cities, Minneapolis, MN, USA.
Myers CL; Department of Computer Science and Engineering, University of Minnesota - Twin Cities, Minneapolis, MN, USA.; Bioinformatics and Computational Biology Graduate Program, University of Minnesota - Twin Cities, Minneapolis, MN, USA.; Pokaż więcej
Źródło:: Molecular systems biology [Mol Syst Biol] 2023 Nov 09; Vol. 19 (11), pp. e11657. Date of Electronic Publication: 2023 Sep 26.
Typ publikacji:: Journal Article
MeSH Terms:: Oncogenes*
Gene Regulatory Networks*
Humans ; Cell Line, Tumor ; CRISPR-Cas Systems/genetics

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Skocz do pozycji: 18.

Tytuł:: SIGNET: transcriptome-wide causal inference for gene regulatory networks.
Autorzy:: Jiang Z; Department of Statistics, Purdue University, West Lafayette, IN, 47907, USA.
Chen C; UCB Pharma, Brussels, 1070, Belgium.
Xu Z; Department of Statistics, Purdue University, West Lafayette, IN, 47907, USA.
Wang X; ByteDance, Shanghai, 201107, China.
Zhang M; Department of Statistics, Purdue University, West Lafayette, IN, 47907, USA.; Department of Epidemiology and Biostatistics, University of California, Irvine, CA, 92617, USA.
Zhang D; Department of Epidemiology and Biostatistics, University of California, Irvine, CA, 92617, USA. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2023 Nov 08; Vol. 13 (1), pp. 19371. Date of Electronic Publication: 2023 Nov 08.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:: Gene Regulatory Networks*
Transcriptome*
Humans ; Gene Expression Profiling ; Algorithms ; Causality

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Skocz do pozycji: 19.

Tytuł:: MIGGRI: A multi-instance graph neural network model for inferring gene regulatory networks for Drosophila from spatial expression images.
Autorzy:: Huang Y; Department of Computer Science and Engineering, Shanghai Jiao Tong University, and Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai, China.
Yu G; Department of Computer Science and Engineering, Shanghai Jiao Tong University, and Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai, China.
Yang Y; Department of Computer Science and Engineering, Shanghai Jiao Tong University, and Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai, China.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2023 Nov 08; Vol. 19 (11), pp. e1011623. Date of Electronic Publication: 2023 Nov 08 (Print Publication: 2023).
Typ publikacji:: Journal Article
MeSH Terms:: Drosophila*/genetics
Gene Regulatory Networks*/genetics
Animals ; Computational Biology/methods ; Neural Networks, Computer ; Gene Expression Profiling/methods

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Skocz do pozycji: 20.

Tytuł:: Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data.
Autorzy:: Kim D; School of Mathematics and Statistics, University of Sydney, Camperdown, NSW, Australia.; Computational Systems Biology Unit, Children's Medical Research Institute, University of Sydney, Camperdown, NSW, Australia.; Sydney Precision Data Science Centre, University of Sydney, Camperdown, NSW, Australia.
Tran A; School of Mathematics and Statistics, University of Sydney, Camperdown, NSW, Australia.; Sydney Precision Data Science Centre, University of Sydney, Camperdown, NSW, Australia.; Charles Perkins Centre, University of Sydney, Camperdown, NSW, Australia.
Kim HJ; Computational Systems Biology Unit, Children's Medical Research Institute, University of Sydney, Camperdown, NSW, Australia.; Sydney Precision Data Science Centre, University of Sydney, Camperdown, NSW, Australia.
Lin Y; School of Mathematics and Statistics, University of Sydney, Camperdown, NSW, Australia.; Sydney Precision Data Science Centre, University of Sydney, Camperdown, NSW, Australia.; Charles Perkins Centre, University of Sydney, Camperdown, NSW, Australia.
Yang JYH; School of Mathematics and Statistics, University of Sydney, Camperdown, NSW, Australia. .; Sydney Precision Data Science Centre, University of Sydney, Camperdown, NSW, Australia. .; Charles Perkins Centre, University of Sydney, Camperdown, NSW, Australia. .
Yang P; School of Mathematics and Statistics, University of Sydney, Camperdown, NSW, Australia. .; Computational Systems Biology Unit, Children's Medical Research Institute, University of Sydney, Camperdown, NSW, Australia. .; Sydney Precision Data Science Centre, University of Sydney, Camperdown, NSW, Australia. .; Charles Perkins Centre, University of Sydney, Camperdown, NSW, Australia. .; Pokaż więcej
Źródło:: NPJ systems biology and applications [NPJ Syst Biol Appl] 2023 Oct 19; Vol. 9 (1), pp. 51. Date of Electronic Publication: 2023 Oct 19.
Typ publikacji:: Journal Article; Review
MeSH Terms:: Multiomics*
Gene Regulatory Networks*/genetics

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