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Tytuł:
SIGNET: transcriptome-wide causal inference for gene regulatory networks.
Autorzy:
Jiang Z; Department of Statistics, Purdue University, West Lafayette, IN, 47907, USA.
Chen C; UCB Pharma, Brussels, 1070, Belgium.
Xu Z; Department of Statistics, Purdue University, West Lafayette, IN, 47907, USA.
Wang X; ByteDance, Shanghai, 201107, China.
Zhang M; Department of Statistics, Purdue University, West Lafayette, IN, 47907, USA.; Department of Epidemiology and Biostatistics, University of California, Irvine, CA, 92617, USA.
Zhang D; Department of Epidemiology and Biostatistics, University of California, Irvine, CA, 92617, USA. .
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Źródło:
Scientific reports [Sci Rep] 2023 Nov 08; Vol. 13 (1), pp. 19371. Date of Electronic Publication: 2023 Nov 08.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Gene Regulatory Networks*
Transcriptome*
Humans ; Gene Expression Profiling ; Algorithms ; Causality
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
From time-series transcriptomics to gene regulatory networks: A review on inference methods.
Autorzy:
Marku M; CRCT, Université de Toulouse, Inserm, CNRS, Université Toulouse III-Paul Sabatier, Centre de Recherches en Cancérologie de Toulouse, Toulouse, France.
Pancaldi V; CRCT, Université de Toulouse, Inserm, CNRS, Université Toulouse III-Paul Sabatier, Centre de Recherches en Cancérologie de Toulouse, Toulouse, France.; Barcelona Supercomputing Center, Barcelona, Spain.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Aug 10; Vol. 19 (8), pp. e1011254. Date of Electronic Publication: 2023 Aug 10 (Print Publication: 2023).
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*/genetics
Transcriptome*/genetics
Gene Expression Profiling ; Algorithms ; Computational Biology/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Integrative Analysis of Metabolome and Transcriptome Provides Insights into the Mechanism of Flower Induction in Pineapple ( Ananas comosus (L.) Merr.) by Ethephon.
Autorzy:
Lin W; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.; Laboratory of Tropical Fruit Biology, Ministry of Agriculture, Zhanjiang 524091, China.; Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.
Liu S; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.; Laboratory of Tropical Fruit Biology, Ministry of Agriculture, Zhanjiang 524091, China.; Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.
Xiao X; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.
Sun W; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.; Laboratory of Tropical Fruit Biology, Ministry of Agriculture, Zhanjiang 524091, China.
Lu X; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.; Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.
Gao Y; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.; Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.
He J; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.
Zhu Z; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.
Wu Q; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.; Laboratory of Tropical Fruit Biology, Ministry of Agriculture, Zhanjiang 524091, China.; Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.
Zhang X; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.; Laboratory of Tropical Fruit Biology, Ministry of Agriculture, Zhanjiang 524091, China.; Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Academy of Tropical Agricultural Sciences, Zhanjiang 524091, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Dec 05; Vol. 24 (24). Date of Electronic Publication: 2023 Dec 05.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Ananas*/genetics
Ananas*/metabolism
Gene Regulatory Networks ; Ethylenes/metabolism ; Flowers/genetics ; Flowers/metabolism ; Metabolome ; Gene Expression Regulation, Plant
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Analysis of transcriptomic features reveals molecular endotypes of SLE with clinical implications.
Autorzy:
Hubbard EL; AMPEL BioSolutions, LLC, 250 W. Main St. #300, Charlottesville, VA, 22902, USA. .; RILITE Research Institute, Charlottesville, VA, 22902, USA. .
Bachali P; AMPEL BioSolutions, LLC, 250 W. Main St. #300, Charlottesville, VA, 22902, USA.; RILITE Research Institute, Charlottesville, VA, 22902, USA.
Kingsmore KM; AMPEL BioSolutions, LLC, 250 W. Main St. #300, Charlottesville, VA, 22902, USA.; RILITE Research Institute, Charlottesville, VA, 22902, USA.
He Y; Altria, Richmond, VA, 23230, USA.
Catalina MD; AbbVie, Worcester, MA, 01605, USA.
Grammer AC; AMPEL BioSolutions, LLC, 250 W. Main St. #300, Charlottesville, VA, 22902, USA.; RILITE Research Institute, Charlottesville, VA, 22902, USA.
Lipsky PE; AMPEL BioSolutions, LLC, 250 W. Main St. #300, Charlottesville, VA, 22902, USA.; RILITE Research Institute, Charlottesville, VA, 22902, USA.
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Źródło:
Genome medicine [Genome Med] 2023 Oct 16; Vol. 15 (1), pp. 84. Date of Electronic Publication: 2023 Oct 16.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*
Lupus Erythematosus, Systemic*/genetics
Lupus Erythematosus, Systemic*/drug therapy
Humans ; Gene Expression Profiling ; Gene Regulatory Networks ; Algorithms
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bioinformatics Analysis of Gene Expression Profiles for Diagnosing Sepsis and Risk Prediction in Patients with Sepsis.
Autorzy:
Choi H; Division of Pulmonary, Allergy, and Critical Care Medicine, Department of Internal Medicine, Hallym University Kangnam Sacred Heart Hospital, Hallym University College of Medicine, Seoul 07441, Republic of Korea.
Lee JY; Division of Pulmonary and Critical Care Medicine, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 06351, Republic of Korea.
Yoo H; Division of Pulmonary and Critical Care Medicine, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 06351, Republic of Korea.
Jeon K; Division of Pulmonary and Critical Care Medicine, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 06351, Republic of Korea.; Department of Health Sciences and Technology, SAIHST, Sungkyunkawan University, Seoul 06351, Republic of Korea.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 May 27; Vol. 24 (11). Date of Electronic Publication: 2023 May 27.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Sepsis*/diagnosis
Sepsis*/genetics
Humans ; Protein Interaction Maps/genetics ; Gene Regulatory Networks ; Gene Expression Profiling ; Computational Biology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transcriptome-wide gene-gene interaction associations elucidate pathways and functional enrichment of complex traits.
Autorzy:
Evans LM; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Ecology & Evolutionary Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.
Arehart CH; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Ecology & Evolutionary Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.
Grotzinger AD; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Psychology & Neuroscience, University of Colorado Boulder, Boulder, Colorado, United States of America.
Mize TJ; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Ecology & Evolutionary Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.
Brasher MS; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Ecology & Evolutionary Biology, University of Colorado Boulder, Boulder, Colorado, United States of America.
Stitzel JA; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Integrative Physiology, University of Colorado Boulder, Boulder, Colorado, United States of America.
Ehringer MA; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Integrative Physiology, University of Colorado Boulder, Boulder, Colorado, United States of America.
Hoeffer CA; Institute for Behavioral Genetics, University of Colorado Boulder, Boulder, Colorado, United States of America.; Department of Integrative Physiology, University of Colorado Boulder, Boulder, Colorado, United States of America.
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Źródło:
PLoS genetics [PLoS Genet] 2023 May 22; Vol. 19 (5), pp. e1010693. Date of Electronic Publication: 2023 May 22 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Transcriptome*/genetics
Epistasis, Genetic*
Multifactorial Inheritance/genetics ; Gene Regulatory Networks/genetics ; Phenotype ; Polymorphism, Single Nucleotide ; Genome-Wide Association Study/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Network-based inference of master regulators in epithelial membrane protein 2-treated human RPE cells.
Autorzy:
Wan H; Sir Run Run Hospital, Nanjing Medical University, 109 Longmian Road, Nanjing, 211100, China.
Gao W; Sir Run Run Hospital, Nanjing Medical University, 109 Longmian Road, Nanjing, 211100, China.
Zhang W; Department of Healthcare management, Sir Run Run Hospital, Nanjing Medical University, 109 Longmian Road, Nanjing, 211100, China.
Tao Z; Sir Run Run Hospital, Nanjing Medical University, 109 Longmian Road, Nanjing, 211100, China.
Lu X; Sir Run Run Hospital, Nanjing Medical University, 109 Longmian Road, Nanjing, 211100, China. .
Chen F; Nanjing Medical University, 101 Longmian Road, Nanjing, 211166, China.
Qin J; Sir Run Run Hospital, Nanjing Medical University, 109 Longmian Road, Nanjing, 211100, China. .
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Źródło:
BMC genomic data [BMC Genom Data] 2022 Jul 07; Vol. 23 (1), pp. 52. Date of Electronic Publication: 2022 Jul 07.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Regulatory Networks*/genetics
Transcriptome*/genetics
Gene Expression Regulation ; Humans ; Hypoxia ; Membrane Glycoproteins/genetics ; Membrane Proteins/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets.
Autorzy:
Figueiredo RQ; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53757, Sankt Augustin, Germany.; Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115, Bonn, Germany.
Del Ser SD; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53757, Sankt Augustin, Germany.; Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115, Bonn, Germany.
Raschka T; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53757, Sankt Augustin, Germany.; Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115, Bonn, Germany.; Fraunhofer Center for Machine Learning, Sankt Augustin, Germany.
Hofmann-Apitius M; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53757, Sankt Augustin, Germany.; Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115, Bonn, Germany.
Kodamullil AT; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53757, Sankt Augustin, Germany.
Mubeen S; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53757, Sankt Augustin, Germany.; Bonn-Aachen International Center for IT, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115, Bonn, Germany.; Fraunhofer Center for Machine Learning, Sankt Augustin, Germany.
Domingo-Fernández D; Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, 53757, Sankt Augustin, Germany. .; Fraunhofer Center for Machine Learning, Sankt Augustin, Germany. .; Enveda Biosciences, Boulder, CO, 80301, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2022 Jun 15; Vol. 23 (1), pp. 231. Date of Electronic Publication: 2022 Jun 15.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Transcriptome*
Gene Expression Profiling ; Humans ; Software
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A global [Formula: see text] gene co-expression network constructed from hundreds of experimental conditions with missing values.
Autorzy:
Kuang J; Department of Electrical and Computer Engineering, Kansas State University, Manhattan, KS 66506 USA.
Buchon N; Department of Entomology, Cornell Institute of Host-Microbe Interactions and Disease, Cornell University, Ithaca, NY 14853 USA.
Michel K; Division of Biology, Kansas State University, Manhattan, KS 66506 USA.
Scoglio C; Department of Electrical and Computer Engineering, Kansas State University, Manhattan, KS 66506 USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2022 May 09; Vol. 23 (1), pp. 170. Date of Electronic Publication: 2022 May 09.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Transcriptome*
Gene Expression Profiling/methods ; Sequence Analysis, RNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transcriptome and proteome analyses reveal the potential mechanism of seed dormancy release in Amomum tsaoko during warm stratification.
Autorzy:
Pan C; Guangxi TCM Resources General Survey and Data Collection Key Laboratory, Guangxi Botanical Garden of Medicinal Plants, Nanning, China.
Yao L; Guangxi TCM Resources General Survey and Data Collection Key Laboratory, Guangxi Botanical Garden of Medicinal Plants, Nanning, China.
Yu L; Guangxi TCM Resources General Survey and Data Collection Key Laboratory, Guangxi Botanical Garden of Medicinal Plants, Nanning, China.
Qiao Z; Guangxi Medicinal Resources Conservation and Genetic Improvement Key Laboratory, Guangxi Botanical Garden of Medicinal Plants, Nanning, China.
Tang M; Guangxi Medicinal Resources Conservation and Genetic Improvement Key Laboratory, Guangxi Botanical Garden of Medicinal Plants, Nanning, China.
Wei F; Guangxi Medicinal Resources Conservation and Genetic Improvement Key Laboratory, Guangxi Botanical Garden of Medicinal Plants, Nanning, China.
Huang X; Guangxi TCM Resources General Survey and Data Collection Key Laboratory, Guangxi Botanical Garden of Medicinal Plants, Nanning, China. .
Zhou Y; Guangxi TCM Resources General Survey and Data Collection Key Laboratory, Guangxi Botanical Garden of Medicinal Plants, Nanning, China. .
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Źródło:
BMC genomics [BMC Genomics] 2023 Mar 02; Vol. 24 (1), pp. 99. Date of Electronic Publication: 2023 Mar 02.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Amomum*
Plant Dormancy/genetics ; Proteome ; Gene Regulatory Networks ; Proteomics ; Plant Breeding
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Identification and characterization of sex-dependent gene expression profile in glioblastoma.
Autorzy:
Qin S; Institute of Neuroscience, Key Laboratory of Molecular Neurobiology of Ministry of Education and the Collaborative Innovation Center for Brain Science, Naval Medical University, Shanghai, China.
Yuan Y; Institute of Neuroscience, Key Laboratory of Molecular Neurobiology of Ministry of Education and the Collaborative Innovation Center for Brain Science, Naval Medical University, Shanghai, China.
Liu H; Institute of Neuroscience, Key Laboratory of Molecular Neurobiology of Ministry of Education and the Collaborative Innovation Center for Brain Science, Naval Medical University, Shanghai, China.
Pu Y; Institute of Neuroscience, Key Laboratory of Molecular Neurobiology of Ministry of Education and the Collaborative Innovation Center for Brain Science, Naval Medical University, Shanghai, China.
Chen K; Institute of Neuroscience, Key Laboratory of Molecular Neurobiology of Ministry of Education and the Collaborative Innovation Center for Brain Science, Naval Medical University, Shanghai, China.
Wu Y; Institute of Neuroscience, Key Laboratory of Molecular Neurobiology of Ministry of Education and the Collaborative Innovation Center for Brain Science, Naval Medical University, Shanghai, China.
Su Z; Institute of Neuroscience, Key Laboratory of Molecular Neurobiology of Ministry of Education and the Collaborative Innovation Center for Brain Science, Naval Medical University, Shanghai, China.
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Źródło:
Neuropathology : official journal of the Japanese Society of Neuropathology [Neuropathology] 2023 Feb; Vol. 43 (1), pp. 72-83. Date of Electronic Publication: 2022 Jul 04.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Glioblastoma*/pathology
Humans ; Female ; Male ; Gene Expression Profiling ; Gene Regulatory Networks ; Biomarkers, Tumor/genetics ; Gene Expression Regulation, Neoplastic ; Prognosis ; Nuclear Proteins/genetics ; Cell Cycle Proteins/genetics ; Cell Cycle Proteins/metabolism ; Shc Signaling Adaptor Proteins/genetics ; Shc Signaling Adaptor Proteins/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Immune transcriptome analysis of COVID-19 patients infected with SARS-CoV-2 variants carrying the E484K escape mutation identifies a distinct gene module.
Autorzy:
Lee HK; National Institute of Diabetes, Digestive and Kidney Diseases, Bethesda, MD, 20892, USA. .
Knabl L; TyrolPath, Zams, Austria. .
Knabl L Sr; Krankenhaus St. Vinzenz, Zams, Austria.
Wieser M; TyrolPath, Zams, Austria.
Mur A; Division of Internal Medicine, Krankenhaus Kufstein, Kufstein, Austria.
Zabernigg A; Division of Internal Medicine, Krankenhaus Kufstein, Kufstein, Austria.
Schumacher J; Division of Internal Medicine, Krankenhaus St. Johann, St. Johann, Austria.
Kapferer S; Division of Internal Medicine, Krankenhaus Kufstein, Kufstein, Austria.
Kaiser N; Division of Internal Medicine, Krankenhaus St. Johann, St. Johann, Austria.
Furth PA; Departments of Oncology and Medicine, Georgetown University, Washington, DC, USA. .
Hennighausen L; National Institute of Diabetes, Digestive and Kidney Diseases, Bethesda, MD, 20892, USA. .
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Źródło:
Scientific reports [Sci Rep] 2022 Feb 18; Vol. 12 (1), pp. 2784. Date of Electronic Publication: 2022 Feb 18.
Typ publikacji:
Journal Article; Research Support, N.I.H., Intramural
MeSH Terms:
Gene Regulatory Networks*
Transcriptome*
COVID-19/*immunology
SARS-CoV-2/*genetics
2',5'-Oligoadenylate Synthetase/genetics ; Adult ; Aged ; COVID-19/genetics ; COVID-19/virology ; Female ; Humans ; Longitudinal Studies ; Male ; Middle Aged ; Young Adult
SCR Organism:
SARS-CoV-2 variants
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Analyses of key gene networks controlling carotenoid metabolism in Xiangfen 1 banana.
Autorzy:
Dong C; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Science/ Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture/Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Zhanjiang, Guangdong, 524091, China.
Wang J; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Science/ Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture/Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Zhanjiang, Guangdong, 524091, China.
Hu Y; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Science/ Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture/Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Zhanjiang, Guangdong, 524091, China.
Xiao W; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Science/ Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture/Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Zhanjiang, Guangdong, 524091, China.
Hu H; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Science/ Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture/Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Zhanjiang, Guangdong, 524091, China. .
Xie J; South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Science/ Key Laboratory of Tropical Fruit Biology, Ministry of Agriculture/Key Laboratory of Hainan Province for Postharvest Physiology and Technology of Tropical Horticultural Products, Zhanjiang, Guangdong, 524091, China. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2022 Jan 17; Vol. 22 (1), pp. 34. Date of Electronic Publication: 2022 Jan 17.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Transcriptome*
Carotenoids/*metabolism
Gene Expression Regulation, Plant/*genetics
Musa/*genetics
Plant Proteins/*metabolism
Carotenoids/isolation & purification ; Fruit/genetics ; Fruit/growth & development ; Fruit/metabolism ; Gene Ontology ; Intramolecular Lyases/genetics ; Intramolecular Lyases/metabolism ; Musa/growth & development ; Musa/metabolism ; Plant Proteins/genetics ; Transcription Factors/genetics ; Transcription Factors/metabolism ; beta Carotene/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Addressing noise in co-expression network construction.
Autorzy:
Burns JJR; Department of Horticulture, 149 Johnson Hall. Washington State University, Pullman, WA 99164. USA.
Shealy BT; Department of Electrical & Computer Engineering, 105 Riggs Hall. Clemson University, Clemson, SC 29631. USA.
Greer MS; School of Electrical Engineering and Computer Science, EME 102. Washington State University, Pullman, WA 99164. USA.
Hadish JA; Molecular Plant Sciences Program, French Ad 324g. Washington State University, Pullman, WA 99164. USA.
McGowan MT; Molecular Plant Sciences Program, French Ad 324g. Washington State University, Pullman, WA 99164. USA.
Biggs T; Department of Horticulture, 149 Johnson Hall. Washington State University, Pullman, WA 99164. USA.
Smith MC; Department of Electrical & Computer Engineering, 105 Riggs Hall. Clemson University, Clemson, SC 29631. USA.
Feltus FA; Department of Genetics and Biochemistry, 130 McGinty Court. Clemson University, Clemson, SC 29634. USA.; Biomedical Data Science & Informatics Program, 100 McAdams Hall. Clemson University, Clemson, SC 29634. USA.; Clemson Center for Human Genetics, 114 Gregor Mendel Circle, Greenwood, SC 29646. USA.
Ficklin SP; Department of Horticulture, 149 Johnson Hall. Washington State University, Pullman, WA 99164. USA.; School of Electrical Engineering and Computer Science, EME 102. Washington State University, Pullman, WA 99164. USA.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2022 Jan 17; Vol. 23 (1).
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Review
MeSH Terms:
Gene Regulatory Networks*
Transcriptome*
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transcriptomics and network analysis highlight potential pathways in the pathogenesis of pterygium.
Autorzy:
de Guimarães JA; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil.
Hounpke BW; Bone Metabolism Laboratory, FMUSP, University of Sao Paulo, São Paulo, SP, Brazil.
Duarte B; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil.
Boso ALM; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil.
Viturino MGM; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil.
de Carvalho Baptista L; Center for Molecular Biology and Genetic Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil.
de Melo MB; Center for Molecular Biology and Genetic Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Alves M; Department of Ophthalmology and Otorhinolaryngology, School of Medical Sciences, University of Campinas (UNICAMP), Rua Tessália Vieira de Camargo. Cidade Universitária, Campinas, São Paulo, 13083887, Brazil. .
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 286. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:
Journal Article; Meta-Analysis; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*
Gene Regulatory Networks*
Transcriptome*
MicroRNAs/*genetics
Pterygium/*genetics
RNA, Messenger/*genetics
Adult ; Aged ; Databases, Genetic ; Female ; Gene Expression Regulation ; Humans ; Male ; Middle Aged ; Oligonucleotide Array Sequence Analysis ; Pterygium/physiopathology ; Pterygium/surgery
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Stage specific comparative transcriptomic analysis to reveal gene networks regulating iron and zinc content in pearl millet [Pennisetum glaucum (L.) R. Br.].
Autorzy:
Satyavathi CT; ICAR-AICRP on Pearl Millet, Agriculture University, Jodhpur, Rajasthan, 342 304, India. .
Tomar RS; Department of Biotechnology, Junagadh Agricultural University, Junagadh, Gujarat, India.
Ambawat S; ICAR-AICRP on Pearl Millet, Agriculture University, Jodhpur, Rajasthan, 342 304, India.
Kheni J; Department of Biotechnology, Junagadh Agricultural University, Junagadh, Gujarat, India.
Padhiyar SM; Department of Biotechnology, Junagadh Agricultural University, Junagadh, Gujarat, India.
Desai H; Department of Biotechnology, Junagadh Agricultural University, Junagadh, Gujarat, India.
Bhatt SB; Department of Biotechnology, Junagadh Agricultural University, Junagadh, Gujarat, India.
Shitap MS; Department of Agricultural Statistics, Junagadh Agricultural University, Junagadh, Gujarat, India.
Meena RC; ICAR-AICRP on Pearl Millet, Agriculture University, Jodhpur, Rajasthan, 342 304, India.
Singhal T; Division of Genetics, Indian Agricultural Research Institute, ICAR, New Delhi, India.
Sankar SM; Division of Genetics, Indian Agricultural Research Institute, ICAR, New Delhi, India.
Singh SP; Division of Genetics, Indian Agricultural Research Institute, ICAR, New Delhi, India.
Khandelwal V; ICAR-AICRP on Pearl Millet, Agriculture University, Jodhpur, Rajasthan, 342 304, India.
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 276. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Gene Expression Profiling*
Gene Regulatory Networks*
Genes, Plant*
Genome, Plant*
Transcriptome*
Iron/*metabolism
Membrane Transport Proteins/*genetics
Pennisetum/*genetics
Plant Proteins/*genetics
Zinc/*metabolism
Gene Expression Regulation, Plant ; Membrane Transport Proteins/metabolism ; Nutritive Value ; Pennisetum/growth & development ; Pennisetum/metabolism ; Plant Proteins/metabolism ; RNA-Seq
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Mechanism of immune infiltration in synovial tissue of osteoarthritis: a gene expression-based study.
Autorzy:
Zhang Q; Department of Orthopedics, Shandong Provincial Hospital Affiliated to Shandong First Medical University, No. 324, Road Jing Wu Wei Qi, Jinan, 250021, Shandong, China.
Sun C; Department of Orthopedics, Shandong Provincial Hospital Affiliated to Shandong First Medical University, No. 324, Road Jing Wu Wei Qi, Jinan, 250021, Shandong, China.
Liu X; Department of Orthopedics, Shandong Provincial Hospital Affiliated to Shandong First Medical University, No. 324, Road Jing Wu Wei Qi, Jinan, 250021, Shandong, China.
Zhu C; Department of Orthopedics, Shandong Provincial Hospital Affiliated to Shandong First Medical University, No. 324, Road Jing Wu Wei Qi, Jinan, 250021, Shandong, China.
Ma C; Department of Orthopedics, Shandong Provincial Hospital Affiliated to Shandong First Medical University, No. 324, Road Jing Wu Wei Qi, Jinan, 250021, Shandong, China.
Feng R; Department of Orthopedics, Shandong Provincial Hospital Affiliated to Shandong First Medical University, No. 324, Road Jing Wu Wei Qi, Jinan, 250021, Shandong, China. .
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Źródło:
Journal of orthopaedic surgery and research [J Orthop Surg Res] 2023 Jan 21; Vol. 18 (1), pp. 58. Date of Electronic Publication: 2023 Jan 21.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*/genetics
Osteoarthritis*/metabolism
Humans ; Synovial Membrane/metabolism ; Gene Expression Profiling ; Gene Regulatory Networks/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Genetic insights into the regulatory pathways for continuous flowering in a unique orchid Arundina graminifolia.
Autorzy:
Ahmad S; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China.
Lu C; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China.
Gao J; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China.
Ren R; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China.
Wei Y; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China.
Wu J; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China.
Jin J; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China.
Zheng C; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China.
Zhu G; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China. .
Yang F; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, People's Republic of China. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2021 Dec 10; Vol. 21 (1), pp. 587. Date of Electronic Publication: 2021 Dec 10.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Signal Transduction*
Transcriptome*
Flowers/*genetics
Gene Expression Regulation, Developmental/*genetics
Orchidaceae/*genetics
Circadian Clocks/genetics ; Cluster Analysis ; Flowers/growth & development ; Flowers/physiology ; Flowers/ultrastructure ; Gene Expression Profiling ; Gene Expression Regulation, Plant/genetics ; Molecular Sequence Annotation ; Orchidaceae/growth & development ; Orchidaceae/physiology ; Orchidaceae/ultrastructure ; Phylogeny ; Plant Growth Regulators/metabolism ; Reproduction
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Optimal dimensionality selection for independent component analysis of transcriptomic data.
Autorzy:
McConn JL; University of California San Diego, San Diego, USA.
Lamoureux CR; University of California San Diego, San Diego, USA.
Poudel S; University of California San Diego, San Diego, USA.
Palsson BO; University of California San Diego, San Diego, USA.
Sastry AV; University of California San Diego, San Diego, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2021 Dec 08; Vol. 22 (1), pp. 584. Date of Electronic Publication: 2021 Dec 08.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Transcriptome*
Algorithms ; Databases, Factual ; Gene Expression Profiling
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Genes and regulatory mechanisms associated with experimentally-induced bovine respiratory disease identified using supervised machine learning methodology.
Autorzy:
Scott MA; Veterinary Education, Research, and Outreach Center, Texas A&M University and West Texas A&M University, Canyon, TX, USA. .
Woolums AR; Department of Pathobiology and Population Medicine, Mississippi State University, Mississippi State, MS, USA.
Swiderski CE; Department of Pathobiology and Population Medicine, Mississippi State University, Mississippi State, MS, USA.
Perkins AD; Department of Computer Science and Engineering, Mississippi State University, Mississippi State, MS, USA.
Nanduri B; Department of Comparative Biomedical Sciences, Mississippi State University, Mississippi State, MS, USA.
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Źródło:
Scientific reports [Sci Rep] 2021 Nov 25; Vol. 11 (1), pp. 22916. Date of Electronic Publication: 2021 Nov 25.
Typ publikacji:
Journal Article
MeSH Terms:
Computational Biology*
Gene Expression Profiling*
Gene Regulatory Networks*
RNA-Seq*
Supervised Machine Learning*
Transcriptome*
Bovine Respiratory Disease Complex/*genetics
Animals ; Bovine Respiratory Disease Complex/immunology ; Bovine Respiratory Disease Complex/microbiology ; Bovine Respiratory Disease Complex/virology ; Cattle ; Databases, Genetic ; Host-Pathogen Interactions ; Lung/immunology ; Lung/microbiology ; Lung/virology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Wyświetlanie 1-20 z 1881

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