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Wyszukujesz frazę ""Genome, Bacterial"" wg kryterium: Temat


Tytuł :
Genome-wide identification of novel genes involved in Corynebacteriales cell envelope biogenesis using Corynebacterium glutamicum as a model.
Autorzy :
de Sousa-d'Auria C; Institute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, Gif-sur-Yvette, France.
Constantinesco-Becker F; Institute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, Gif-sur-Yvette, France.
Constant P; Département Tuberculose & Biologie des Infections, Institut de Pharmacologie et de Biologie Structurale IPBS, UMR5089, Université de Toulouse, CNRS, UPS, Toulouse, France.
Tropis M; Département Tuberculose & Biologie des Infections, Institut de Pharmacologie et de Biologie Structurale IPBS, UMR5089, Université de Toulouse, CNRS, UPS, Toulouse, France.
Houssin C; Institute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, Gif-sur-Yvette, France.
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Źródło :
PloS one [PLoS One] 2020 Dec 31; Vol. 15 (12), pp. e0240497. Date of Electronic Publication: 2020 Dec 31 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Bacterial Proteins/*genetics
Cell Wall/*genetics
Corynebacterium glutamicum/*genetics
Galactans/*metabolism
Mycolic Acids/*metabolism
Peptidoglycan/*metabolism
Bacterial Proteins/classification ; Bacterial Proteins/metabolism ; Cell Wall/metabolism ; Computational Biology/methods ; Corynebacterium glutamicum/metabolism ; DNA Transposable Elements ; Galactans/genetics ; Gene Expression ; Gene Ontology ; Genetic Loci ; Molecular Sequence Annotation ; Mutagenesis, Insertional ; Peptidoglycan/genetics ; Plasmids/chemistry ; Plasmids/metabolism
Czasopismo naukowe
Tytuł :
In vivo diversification of target genomic sites using processive base deaminase fusions blocked by dCas9.
Autorzy :
Álvarez B; Department of Microbial Biotechnology, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CNB-CSIC), Darwin 3, Campus UAM Cantoblanco, 28049, Madrid, Spain.
Mencía M; Centro de Biología Molecular 'Severo Ochoa' (Consejo Superior de Investigaciones Científicas - Universidad Autónoma de Madrid), Nicolas Cabrera 1, Campus UAM Cantoblanco, 28049, Madrid, Spain.
de Lorenzo V; Systems Biology Program, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CNB-CSIC), Darwin 3, Campus UAM Cantoblanco, 28049, Madrid, Spain.
Fernández LÁ; Department of Microbial Biotechnology, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CNB-CSIC), Darwin 3, Campus UAM Cantoblanco, 28049, Madrid, Spain. .
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Źródło :
Nature communications [Nat Commun] 2020 Dec 22; Vol. 11 (1), pp. 6436. Date of Electronic Publication: 2020 Dec 22.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Aminohydrolases/*metabolism
CRISPR-Associated Protein 9/*metabolism
Recombinant Fusion Proteins/*metabolism
DNA-Directed RNA Polymerases/metabolism ; Directed Molecular Evolution ; Escherichia coli/genetics ; Microbial Sensitivity Tests ; Mutagenesis/genetics ; Mutation/genetics ; RNA, Guide/genetics ; Viral Proteins/metabolism ; beta-Lactamases/metabolism
Czasopismo naukowe
Tytuł :
Genome-scale determination of 5´ and 3´ boundaries of RNA transcripts in Streptomyces genomes.
Autorzy :
Lee Y; Department of Biological Sciences and KI for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Lee N; Department of Biological Sciences and KI for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Hwang S; Department of Biological Sciences and KI for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Kim W; Department of Biological Sciences and KI for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Jeong Y; Department of Biological Sciences and KI for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Cho S; Department of Biological Sciences and KI for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Palsson BO; Department of Bioengineering, University of California San Diego, La Jolla, CA, 92093, USA.; Department of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, 2800, Denmark.
Cho BK; Department of Biological Sciences and KI for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea. .; Intelligent Synthetic Biology Center, Daejeon, 34141, Republic of Korea. .
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Źródło :
Scientific data [Sci Data] 2020 Dec 15; Vol. 7 (1), pp. 436. Date of Electronic Publication: 2020 Dec 15.
Typ publikacji :
Dataset; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
RNA, Bacterial/*genetics
Streptomyces/*genetics
High-Throughput Nucleotide Sequencing ; Multigene Family ; RNA-Seq ; Secondary Metabolism/genetics
Czasopismo naukowe
Tytuł :
4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans.
Autorzy :
Gaultney RA; Unité Biologie des Spirochètes, Institut Pasteur, Paris, France.
Vincent AT; Bacterial Symbionts Evolution, INRS-Centre Armand-Frappier, Laval, Quebec, Canada.
Lorioux C; Unité Biologie des Spirochètes, Institut Pasteur, Paris, France.
Coppée JY; Transcriptome and Epigenome Platform, Biomics, Center for Technological Resources and Research (C2RT), Institut Pasteur, Paris, France.
Sismeiro O; Transcriptome and Epigenome Platform, Biomics, Center for Technological Resources and Research (C2RT), Institut Pasteur, Paris, France.
Varet H; Transcriptome and Epigenome Platform, Biomics, Center for Technological Resources and Research (C2RT), Institut Pasteur, Paris, France.; Bioinformatics and Biostatistics Hub, Department of Computational Biology, USR 3756 CNRS, Institut Pasteur, Paris, France.
Legendre R; Transcriptome and Epigenome Platform, Biomics, Center for Technological Resources and Research (C2RT), Institut Pasteur, Paris, France.; Bioinformatics and Biostatistics Hub, Department of Computational Biology, USR 3756 CNRS, Institut Pasteur, Paris, France.
Cockram CA; Spatial Regulation of Genomes Unit, Institut Pasteur, Paris, France.
Veyrier FJ; Bacterial Symbionts Evolution, INRS-Centre Armand-Frappier, Laval, Quebec, Canada.
Picardeau M; Unité Biologie des Spirochètes, Institut Pasteur, Paris, France.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Dec 02; Vol. 48 (21), pp. 12102-12115.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Epigenesis, Genetic*
Genome, Bacterial*
Bacterial Proteins/*genetics
Cytosine/*metabolism
DNA (Cytosine-5-)-Methyltransferases/*genetics
DNA, Bacterial/*metabolism
Leptospira interrogans/*genetics
Animals ; Bacterial Proteins/metabolism ; Cytosine/analogs & derivatives ; DNA (Cytosine-5-)-Methyltransferases/deficiency ; DNA Methylation ; DNA, Bacterial/genetics ; Gene Expression Regulation, Bacterial ; Leptospira interrogans/metabolism ; Leptospira interrogans/pathogenicity ; Leptospirosis/microbiology ; Leptospirosis/mortality ; Leptospirosis/pathology ; Mesocricetus ; Promoter Regions, Genetic ; Sigma Factor/genetics ; Sigma Factor/metabolism ; Survival Analysis ; Transcription, Genetic ; Virulence
Czasopismo naukowe
Tytuł :
Building a tRNA thermometer to estimate microbial adaptation to temperature.
Autorzy :
Cimen E; Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853, USA.; Computational Intelligence and Optimization Laboratory, Industrial Engineering Department, Eskisehir Technical University, Eskisehir 26555, Turkey.
Jensen SE; School of Integrative Plant Sciences, Plant Breeding and Genetics Section, Cornell University, Ithaca, NY 14853, USA.
Buckler ES; Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853, USA.; School of Integrative Plant Sciences, Plant Breeding and Genetics Section, Cornell University, Ithaca, NY 14853, USA.; United States Department of Agriculture, Agricultural Research Service, Ithaca, NY 14850, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Dec 02; Vol. 48 (21), pp. 12004-12015.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Genome, Archaeal*
Genome, Bacterial*
Adaptation, Physiological/*genetics
Archaea/*genetics
Bacteria/*genetics
RNA, Transfer/*chemistry
Anticodon/chemistry ; Anticodon/metabolism ; Archaea/classification ; Archaea/metabolism ; Bacteria/classification ; Bacteria/metabolism ; Base Pairing ; Base Sequence ; Computer Simulation ; Models, Genetic ; Neural Networks, Computer ; Nucleic Acid Conformation ; Phylogeny ; RNA Stability ; RNA, Transfer/genetics ; RNA, Transfer/metabolism ; Temperature ; Thermometers
Czasopismo naukowe
Tytuł :
Prophages are associated with extensive CRISPR-Cas auto-immunity.
Autorzy :
Nobrega FL; Department of Bionanoscience, Delft University of Technology, Delft, Netherlands.; Kavli Institute of Nanoscience, Delft, Netherlands.
Walinga H; Department of Bionanoscience, Delft University of Technology, Delft, Netherlands.; Kavli Institute of Nanoscience, Delft, Netherlands.
Dutilh BE; Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Utrecht, Netherlands.
Brouns SJJ; Department of Bionanoscience, Delft University of Technology, Delft, Netherlands.; Kavli Institute of Nanoscience, Delft, Netherlands.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Dec 02; Vol. 48 (21), pp. 12074-12084.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Bacteria/*genetics
CRISPR-Associated Proteins/*genetics
CRISPR-Cas Systems/*immunology
Clustered Regularly Interspaced Short Palindromic Repeats/*immunology
Prophages/*genetics
Autoimmunity/genetics ; Bacteria/immunology ; Bacteria/virology ; Base Sequence ; CRISPR-Associated Protein 9/genetics ; CRISPR-Associated Protein 9/immunology ; CRISPR-Associated Proteins/immunology ; Chromosome Mapping/statistics & numerical data ; Software
Czasopismo naukowe
Tytuł :
PpCas9 from Pasteurella pneumotropica - a compact Type II-C Cas9 ortholog active in human cells.
Autorzy :
Fedorova I; Skolkovo Institute of Science and Technology, Center of Life Sciences, Moscow, 121205, Russia.; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Institute of Gene Biology, Russian Academy of Sciences, Moscow, 119334, Russia.
Vasileva A; Skolkovo Institute of Science and Technology, Center of Life Sciences, Moscow, 121205, Russia.; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Institute of Gene Biology, Russian Academy of Sciences, Moscow, 119334, Russia.; Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia.
Selkova P; Skolkovo Institute of Science and Technology, Center of Life Sciences, Moscow, 121205, Russia.; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Institute of Gene Biology, Russian Academy of Sciences, Moscow, 119334, Russia.; Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia.
Abramova M; Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia.; Saint Petersburg State University, Saint Petersburg, 199034, Russia.
Arseniev A; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Institute of Gene Biology, Russian Academy of Sciences, Moscow, 119334, Russia.; Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia.
Pobegalov G; Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia.
Kazalov M; Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia.; Saint Petersburg State University, Saint Petersburg, 199034, Russia.
Musharova O; Skolkovo Institute of Science and Technology, Center of Life Sciences, Moscow, 121205, Russia.; Institute of Molecular Genetics of National Research Center 'Kurchatov Institute'', Moscow, 123182, Russia.
Goryanin I; Skolkovo Institute of Science and Technology, Center of Life Sciences, Moscow, 121205, Russia.
Artamonova D; Skolkovo Institute of Science and Technology, Center of Life Sciences, Moscow, 121205, Russia.
Zyubko T; Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia.
Shmakov S; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
Artamonova T; Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia.
Khodorkovskii M; Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, 195251, Russia.
Severinov K; Saint Petersburg State University, Saint Petersburg, 199034, Russia.; Institute of Molecular Genetics of National Research Center 'Kurchatov Institute'', Moscow, 123182, Russia.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Dec 02; Vol. 48 (21), pp. 12297-12309.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
CRISPR-Cas Systems*
Clustered Regularly Interspaced Short Palindromic Repeats*
Genome, Bacterial*
CRISPR-Associated Protein 9/*genetics
Pasteurella pneumotropica/*genetics
RNA, Guide/*genetics
Amino Acid Sequence ; Base Sequence ; CRISPR-Associated Protein 9/chemistry ; CRISPR-Associated Protein 9/metabolism ; Cloning, Molecular ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Gene Editing/methods ; Gene Expression ; Genetic Vectors/chemistry ; Genetic Vectors/metabolism ; HEK293 Cells ; Humans ; Nucleic Acid Conformation ; Pasteurella pneumotropica/enzymology ; RNA, Guide/chemistry ; RNA, Guide/metabolism ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Recombinant Proteins/metabolism ; Rhodobacteraceae/enzymology ; Rhodobacteraceae/genetics ; Sequence Alignment ; Sequence Homology, Amino Acid
Czasopismo naukowe
Tytuł :
Genome-based classification of Acidihalobacter prosperus F5 (=DSM 105917=JCM 32255) as Acidihalobacter yilgarnensis sp. nov.
Autorzy :
Khaleque HN; School of Pharmacy and Biomedical Sciences, Curtin University, Perth, Australia.; CSIRO Land and Water, Floreat, Australia.
González C; Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.; Center for Bioinformatics and Genome Biology, Fundacion Ciencia y Vida, Santiago, Chile.
Johnson DB; Faculty of Health and Life Sciences, Coventry University, Coventry, CV1 5RW, UK.; School of Natural Sciences, Bangor University, Bangor LL57 2UW, UK.
Kaksonen AH; CSIRO Land and Water, Floreat, Australia.
Holmes DS; Universidad San Sebastian, Santiago, Chile.; Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.; Center for Bioinformatics and Genome Biology, Fundacion Ciencia y Vida, Santiago, Chile.
Watkin ELJ; School of Pharmacy and Biomedical Sciences, Curtin University, Perth, Australia.
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Źródło :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Dec; Vol. 70 (12), pp. 6226-6234.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Phylogeny*
Ectothiorhodospiraceae/*classification
Bacterial Typing Techniques ; Base Composition ; Copper ; DNA, Bacterial/genetics ; Iron/metabolism ; Nucleic Acid Hybridization ; Oxidation-Reduction ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Sulfur/metabolism ; Western Australia
SCR Organism :
Acidihalobacter prosperus
Czasopismo naukowe
Tytuł :
Genome-based reclassification of Azospirillum brasilense Sp245 as the type strain of Azospirillum baldaniorum sp. nov.
Autorzy :
Dos Santos Ferreira N; Programa de Pós-Graduação em Agronomia-Ciência do Solo, Universidade Federal Rural do Rio de Janeiro, BR 465 Km 7, 23890-000, Seropédica, Rio de Janeiro, Brazil.
Hayashi Sant' Anna F; Departamento de Genética, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Massena Reis V; Embrapa Agrobiologia, BR 465 Km 7, 23891-000, Seropédica, Rio de Janeiro, Brazil.
Ambrosini A; Departamento de Genética, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Gazolla Volpiano C; Departamento de Genética, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Rothballer M; Institute of Network Biology, Helmholtz Zentrum Muenchen, Ingolstaedter Landstr. 185764 Neuherberg, Germany.
Schwab S; Embrapa Agrobiologia, BR 465 Km 7, 23891-000, Seropédica, Rio de Janeiro, Brazil.
Baura VA; Departamento de Bioquímica e Biologia Molecular, Núcleo de Fixação de Nitrogênio, UFPR, Curitiba, Brazil.
Balsanelli E; Departamento de Bioquímica e Biologia Molecular, Núcleo de Fixação de Nitrogênio, UFPR, Curitiba, Brazil.
Pedrosa FO; Departamento de Bioquímica e Biologia Molecular, Núcleo de Fixação de Nitrogênio, UFPR, Curitiba, Brazil.
Pereira Passaglia LM; Departamento de Genética, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Maltempi de Souza E; Departamento de Bioquímica e Biologia Molecular, Núcleo de Fixação de Nitrogênio, UFPR, Curitiba, Brazil.
Hartmann A; Faculty of Biology, Microbe-Host-Interactions, Ludwig-Maximilian-University Muenchen, 82152 Planegg/Martinsried, Germany.
Cassan F; Laboratorio de Fisiología Vegetal y de la Interacción Planta-microorganismo. Instituto de Investigaciones Agrobiotecnológicas (INIAB-CONICET), FCEFQyN. Universidad Nacional de Río Cuarto., Ruta 36, Km 601, Río Cuarto, Córdoba, Argentina.
Zilli JE; Embrapa Agrobiologia, BR 465 Km 7, 23891-000, Seropédica, Rio de Janeiro, Brazil.
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Źródło :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Dec; Vol. 70 (12), pp. 6203-6212.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Phylogeny*
Azospirillum/*classification
Azospirillum brasilense/*classification
Bacterial Typing Techniques ; Base Composition ; Brazil ; DNA, Bacterial/genetics ; Flagella/chemistry ; Nucleic Acid Hybridization ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł :
Genomic analysis of Bacillus cereus NWUAB01 and its heavy metal removal from polluted soil.
Autorzy :
Ayangbenro AS; Food Security and Safety, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa.
Babalola OO; Food Security and Safety, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa. .
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Źródło :
Scientific reports [Sci Rep] 2020 Nov 12; Vol. 10 (1), pp. 19660. Date of Electronic Publication: 2020 Nov 12.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Soil Microbiology*
Bacillus cereus/*genetics
Metals, Heavy/*metabolism
Soil Pollutants/*metabolism
Bacillus cereus/drug effects ; Bacillus cereus/isolation & purification ; Biodegradation, Environmental ; Drug Resistance, Bacterial/genetics ; Metals, Heavy/pharmacology ; Soil ; Soil Pollutants/pharmacology ; Spectroscopy, Fourier Transform Infrared ; Surface-Active Agents/metabolism
Czasopismo naukowe
Tytuł :
High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing.
Autorzy :
Vereecke N; Faculty of Veterinary Medicine, Department of Virology, Parasitology and Immunology, Ghent University, Salisburylaan 133, 9820, Merelbeke, Belgium. .; PathoSense, Merelbeke, Belgium. .
Bokma J; Faculty of Veterinary Medicine, Department of Large Animal Internal Medicine, Ghent University, Salisburylaan 133, 9820, Merelbeke, Belgium.
Haesebrouck F; Faculty of Veterinary Medicine, Department of Pathology, Bacteriology and Avian Diseases, Ghent University, Salisburylaan 133, 9820, Merelbeke, Belgium.
Nauwynck H; Faculty of Veterinary Medicine, Department of Virology, Parasitology and Immunology, Ghent University, Salisburylaan 133, 9820, Merelbeke, Belgium.; PathoSense, Merelbeke, Belgium.
Boyen F; Faculty of Veterinary Medicine, Department of Pathology, Bacteriology and Avian Diseases, Ghent University, Salisburylaan 133, 9820, Merelbeke, Belgium.
Pardon B; Faculty of Veterinary Medicine, Department of Large Animal Internal Medicine, Ghent University, Salisburylaan 133, 9820, Merelbeke, Belgium.
Theuns S; Faculty of Veterinary Medicine, Department of Virology, Parasitology and Immunology, Ghent University, Salisburylaan 133, 9820, Merelbeke, Belgium.; PathoSense, Merelbeke, Belgium.
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Nov 11; Vol. 21 (1), pp. 517. Date of Electronic Publication: 2020 Nov 11.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Mycoplasma bovis/*genetics
Nanopore Sequencing/*methods
Algorithms ; Whole Genome Sequencing/methods
Czasopismo naukowe
Tytuł :
A genomic and historical synthesis of plague in 18th century Eurasia.
Autorzy :
Guellil M; Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, 0316 Oslo, Norway; .; Institute of Genomics, University of Tartu, 51010 Tartu, Estonia.
Kersten O; Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, 0316 Oslo, Norway.
Namouchi A; Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, 0316 Oslo, Norway.; Centre for Integrative Genetics, Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, 1430 Ås, Norway.
Luciani S; Laboratory of Molecular Archaeo-Anthropology/ancientDNA, School of Biosciences and Veterinary Medicine, University of Camerino, 62032 Camerino, Italy.
Marota I; Laboratory of Molecular Archaeo-Anthropology/ancientDNA, School of Biosciences and Veterinary Medicine, University of Camerino, 62032 Camerino, Italy.
Arcini CA; Arkeologerna, National Historical Museums, SE-226 60 Lund, Sweden.
Iregren E; Department of Archaeology and Ancient History, Lund University, SE-221 00, Lund, Sweden.
Lindemann RA; School of Dentistry, University of California Los Angeles, CA 90024.
Warfvinge G; Faculty of Odontology, Malmö University, SE-205 06 Malmö, Sweden.
Bakanidze L; National Center for Disease Control and Public Health, 0198 Tbilisi, Georgia.
Bitadze L; Anthropological Studies of the Institute of History and Ethnology, Ivane Javakhishvili Tbilisi State University, 0177 Tbilisi, Georgia.
Rubini M; Anthropological Service of Soprintendenza Archeologia Belle Arti e Paesaggio per le province di Frosinone, Latina e Rieti (Lazio), Ministry of Cultural Heritage and Activities, 00192 Rome, Italy.; Department of Archaeology, University of Foggia, 71122 Foggia, Italy.
Zaio P; Anthropological Service of Soprintendenza Archeologia Belle Arti e Paesaggio per le province di Frosinone, Latina e Rieti (Lazio), Ministry of Cultural Heritage and Activities, 00192 Rome, Italy.
Zaio M; Anthropological Service of Soprintendenza Archeologia Belle Arti e Paesaggio per le province di Frosinone, Latina e Rieti (Lazio), Ministry of Cultural Heritage and Activities, 00192 Rome, Italy.
Neri D; Anthropological Service of Soprintendenza Archeologia Belle Arti e Paesaggio per le province di Frosinone, Latina e Rieti (Lazio), Ministry of Cultural Heritage and Activities, 00192 Rome, Italy.
Stenseth NC; Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, 0316 Oslo, Norway; .
Bramanti B; Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, 0316 Oslo, Norway; .; Institute of Genomics, University of Tartu, 51010 Tartu, Estonia.; Department of Biomedical and Specialty Surgical Sciences, Faculty of Medicine, Pharmacy and Prevention, University of Ferrara, 44121 Ferrara, Italy.
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2020 Nov 10; Vol. 117 (45), pp. 28328-28335. Date of Electronic Publication: 2020 Oct 26.
Typ publikacji :
Historical Article; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Plague/*history
Plague/*microbiology
Yersinia pestis/*genetics
DNA, Bacterial ; Europe ; History, 18th Century ; History, Medieval ; Humans ; Pandemics/history ; Phylogeny ; Plague/genetics ; Russia ; Yersinia pestis/classification
Czasopismo naukowe
Tytuł :
F4- and F18-Positive Enterotoxigenic Escherichia coli Isolates from Diarrhea of Postweaning Pigs: Genomic Characterization.
Autorzy :
García V; Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark.; Laboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.
Gambino M; Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark.
Pedersen K; Statens Veterinärmedicinska Anstalt, Uppsala, Sweden.
Haugegaard S; SEGES Danish Pig Research Center, Copenhagen, Denmark.
Olsen JE; Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark.
Herrero-Fresno A; Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark .
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Źródło :
Applied and environmental microbiology [Appl Environ Microbiol] 2020 Nov 10; Vol. 86 (23). Date of Electronic Publication: 2020 Nov 10 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Diarrhea/*veterinary
Enterotoxigenic Escherichia coli/*genetics
Escherichia coli Infections/*veterinary
Swine Diseases/*epidemiology
Animals ; Denmark/epidemiology ; Diarrhea/epidemiology ; Diarrhea/microbiology ; Escherichia coli Infections/epidemiology ; Escherichia coli Infections/microbiology ; Phylogeny ; Swine ; Swine Diseases/microbiology
Czasopismo naukowe
Tytuł :
Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly.
Autorzy :
Gu CH; Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
Zhao C; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Hofstaedter C; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Tebas P; Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
Glaser L; Department of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
Baldassano R; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Bittinger K; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Mattei LM; Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Bushman FD; Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
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Źródło :
PloS one [PLoS One] 2020 Nov 09; Vol. 15 (11), pp. e0236533. Date of Electronic Publication: 2020 Nov 09 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Cross Infection/*diagnosis
DNA, Bacterial/*analysis
Mycobacterium Infections/*diagnosis
Mycobacterium chelonae/*isolation & purification
Sequence Analysis, DNA/*methods
Whole Genome Sequencing/*methods
Cross Infection/epidemiology ; Cross Infection/microbiology ; DNA, Bacterial/genetics ; High-Throughput Nucleotide Sequencing ; Humans ; Mycobacterium Infections/epidemiology ; Mycobacterium Infections/microbiology ; Mycobacterium chelonae/classification ; Mycobacterium chelonae/genetics ; Philadelphia/epidemiology ; Phylogeny
Czasopismo naukowe
Tytuł :
Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant.
Autorzy :
Felestrino ÉB; Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.
Sanchez AB; Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.
Caneschi WL; Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.
Lemes CGC; Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.
Assis RAB; Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.
Cordeiro IF; Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.
Fonseca NP; Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.
Villa MM; Departamento de Ciências Biológicas (DECBI), Instituto de Ciências Exatas e Biológicas (ICEB), Universidade Federal de Ouro Preto (UFOP), Ouro Preto, MG, Brazil.
Vieira IT; Departamento de Ciências Biológicas (DECBI), Instituto de Ciências Exatas e Biológicas (ICEB), Universidade Federal de Ouro Preto (UFOP), Ouro Preto, MG, Brazil.
Kamino LHY; Instituto Prístino, Belo Horizonte, MG, Brazil.
do Carmo FF; Instituto Prístino, Belo Horizonte, MG, Brazil.
da Silva AM; Departamento de Bioquímica (DBQ), Instituto de Química (IQ), Universidade de São Paulo (USP), São Paulo, SP, Brazil.
Thomas AM; Departamento de Bioquímica (DBQ), Instituto de Química (IQ), Universidade de São Paulo (USP), São Paulo, SP, Brazil.
Patané JSL; Departamento de Bioquímica (DBQ), Instituto de Química (IQ), Universidade de São Paulo (USP), São Paulo, SP, Brazil.
Ferreira FC; Instituto de Biotecnologia Aplicada a Agropecuária (BIOAGRO), Universidade Federal de Viçosa (UFV), Viçosa, MG, Brazil.
de Freitas LG; Instituto de Biotecnologia Aplicada a Agropecuária (BIOAGRO), Universidade Federal de Viçosa (UFV), Viçosa, MG, Brazil.
Varani AM; Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal (FCAV), Universidade Estadual Paulista (UNESP), São Paulo, SP, Brazil.
Ferro JA; Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias de Jaboticabal (FCAV), Universidade Estadual Paulista (UNESP), São Paulo, SP, Brazil.
Silva RS; Faculdade de Computação (FACOM), Universidade Federal de Mato Grosso do Sul, Campo Grande, MS, Brazil.
Almeida NF; Faculdade de Computação (FACOM), Universidade Federal de Mato Grosso do Sul, Campo Grande, MS, Brazil.
Garcia CCM; Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.; Departamento de Ciências Biológicas (DECBI), Instituto de Ciências Exatas e Biológicas (ICEB), Universidade Federal de Ouro Preto (UFOP), Ouro Preto, MG, Brazil.
Setubal JC; Departamento de Bioquímica (DBQ), Instituto de Química (IQ), Universidade de São Paulo (USP), São Paulo, SP, Brazil.
Moreira LM; Núcleo de Pesquisas em Ciências Biológicas (NUPEB), Universidade Federal de Ouro Preto, Ouro Preto, MG, Brazil.; Departamento de Ciências Biológicas (DECBI), Instituto de Ciências Exatas e Biológicas (ICEB), Universidade Federal de Ouro Preto (UFOP), Ouro Preto, MG, Brazil.
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Źródło :
PloS one [PLoS One] 2020 Nov 05; Vol. 15 (11), pp. e0241546. Date of Electronic Publication: 2020 Nov 05 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Whole Genome Sequencing*
Alcaligenes faecalis/*genetics
Citrus/*microbiology
Alcaligenes faecalis/drug effects ; Animals ; Anti-Bacterial Agents/pharmacology ; Base Sequence ; Citrus/parasitology ; DNA, Circular/genetics ; Drug Resistance, Microbial/drug effects ; Drug Resistance, Microbial/genetics ; Genomic Islands/genetics ; Iron/metabolism ; Metals, Heavy/toxicity ; Mimosa/microbiology ; Nematoda/physiology ; Phenols/metabolism ; Phylogeny
Czasopismo naukowe
Tytuł :
Complete Genome Sequence Data of Nonpathogenic and Nonantagonistic Strain of Rhizobium vitis VAR06-30 Isolated From Grapevine Rhizosphere.
Autorzy :
Noutoshi Y; Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Toyoda A; Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Shizuoka, Japan.
Ishii T; Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Saito K; Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Watanabe M; Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Kawaguchi A; Western Region Agricultural Research Center, National Agricultural and Food Research Organization (NARO), Fukuyama, Hiroshima, Japan.
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Źródło :
Molecular plant-microbe interactions : MPMI [Mol Plant Microbe Interact] 2020 Nov; Vol. 33 (11), pp. 1283-1285. Date of Electronic Publication: 2020 Oct 01.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Rhizobium*/genetics
Plant Tumors/*microbiology
Vitis/*microbiology
Phylogeny ; Rhizosphere
Czasopismo naukowe
Tytuł :
Complete Genome Sequence of the Fire Blight Pathogen Strain Erwinia amylovora Ea1189.
Autorzy :
Yu M; Department of Crop Sciences, University of Illinois at Urbana-Champaign, IL 61801, U.S.A.
Singh J; Plant Pathology and Plant-Microbe Biology Section, Cornell University, Geneva, NY 14456, U.S.A.
Khan A; Plant Pathology and Plant-Microbe Biology Section, Cornell University, Geneva, NY 14456, U.S.A.
Sundin GW; Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, U.S.A.
Zhao Y; Department of Crop Sciences, University of Illinois at Urbana-Champaign, IL 61801, U.S.A.
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Źródło :
Molecular plant-microbe interactions : MPMI [Mol Plant Microbe Interact] 2020 Nov; Vol. 33 (11), pp. 1277-1279. Date of Electronic Publication: 2020 Oct 01.
Typ publikacji :
Journal Article
MeSH Terms :
Erwinia amylovora*/genetics
Genome, Bacterial*
Malus/*microbiology
Plant Diseases/*microbiology
Pyrus/*microbiology
Chromosomes, Bacterial ; Plasmids
Czasopismo naukowe
Tytuł :
Complete Genome Sequence Data of Tumorigenic Rhizobium vitis Strain VAT03-9, a Causal Agent of Grapevine Crown Gall Disease.
Autorzy :
Noutoshi Y; Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Toyoda A; Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Shizuoka, Japan.
Ishii T; Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Saito K; Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Watanabe M; Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.
Kawaguchi A; Western Region Agricultural Research Center, National Agricultural and Food Research Organization (NARO), Fukuyama, Hiroshima, Japan.
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Źródło :
Molecular plant-microbe interactions : MPMI [Mol Plant Microbe Interact] 2020 Nov; Vol. 33 (11), pp. 1280-1282. Date of Electronic Publication: 2020 Oct 01.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Rhizobium*/genetics
Plant Tumors/*microbiology
Vitis/*microbiology
Virulence
Czasopismo naukowe
Tytuł :
Whole-genome sequencing to investigate two concurrent outbreaks of Salmonella Enteritidis in South Africa, 2018.
Autorzy :
Smith AM; Department of Clinical Microbiology and Infectious Diseases, Faculty of Health Sciences, University of the Witwatersrand, South Africa.; Centre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, South Africa.
Tau NP; Centre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, South Africa.
Ngomane HM; Centre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, South Africa.
Sekwadi P; Centre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, South Africa.
Ramalwa N; Centre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, South Africa.
Moodley K; Lancet Laboratories, South Africa.
Govind C; Lancet Laboratories, South Africa.
Khan S; Ampath Laboratories, South Africa.
Archary M; University of KwaZulu-Natal, South Africa.
Thomas J; Centre for Enteric Diseases, National Institute for Communicable Diseases, Division of the National Health Laboratory Service, South Africa.
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Źródło :
Journal of medical microbiology [J Med Microbiol] 2020 Nov; Vol. 69 (11), pp. 1303-1307.
Typ publikacji :
Journal Article
MeSH Terms :
Disease Outbreaks*
Genome, Bacterial*
Whole Genome Sequencing*
Foodborne Diseases/*epidemiology
Salmonella Infections/*epidemiology
Salmonella enteritidis/*genetics
Adult ; Child Day Care Centers ; Child, Preschool ; Feces/microbiology ; Foodborne Diseases/microbiology ; Gastroenteritis/epidemiology ; Gastroenteritis/microbiology ; Humans ; Infant ; Infant, Newborn ; Middle Aged ; Raw Foods/microbiology ; Salmonella Infections/microbiology ; South Africa/epidemiology
Czasopismo naukowe
Tytuł :
Genomic analysis suggests Salinispora is a rich source of novel lanthipeptides.
Autorzy :
Kittrell CG; Department of Chemistry, Mercer University, Macon, GA, USA.
Shah SC; Department of Chemistry, Mercer University, Macon, GA, USA.
Halbert ME; Department of Chemistry, Mercer University, Macon, GA, USA.
Scott DH; Department of Chemistry, Mercer University, Macon, GA, USA.
Limbrick EM; Department of Chemistry, Mercer University, Macon, GA, USA. .
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Źródło :
Molecular genetics and genomics : MGG [Mol Genet Genomics] 2020 Nov; Vol. 295 (6), pp. 1529-1535. Date of Electronic Publication: 2020 Sep 07.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Alanine/*analogs & derivatives
Bacterial Proteins/*metabolism
Micromonosporaceae/*metabolism
Peptide Fragments/*metabolism
Sulfides/*metabolism
Alanine/isolation & purification ; Alanine/metabolism ; Bacterial Proteins/genetics ; Genomics ; Micromonosporaceae/genetics ; Micromonosporaceae/growth & development ; Peptide Fragments/isolation & purification ; Sulfides/isolation & purification
SCR Organism :
Salinispora arenicola
Czasopismo naukowe

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